Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G35560 AT5G35560 |
| fragaria_vesca | FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 |
| malus_domestica | MD00G1142500.v1.1 MD02G1088900.v1.1 MD02G1089000.v1.1 MD15G1216100.v1.1 |
| prunus_persica | Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 |
| pyrus_communis | pycom15g19170 |
| rosa_chinensis | RchiOBHm_Chr2g0094551 |
| rosa_laevigata | RLG00000016501 |
| rosa_multiflora | Rmu_sc0004359.1_g000040 |
| rosa_roxburghii | Rroxscaffold_2G00147070 |
| rosa_rugosa | Rorug02G0044800 Rorug02G0044900 Rorug02G0045000 Rorug02G0045100 Rorug02G0045100 Rorug02G0045100 |
| rosa_samantha | Rh2AG093000 Rh2BG093300 Rh2CG095700 Rh2DG092100 |
| rosa_wichuraiana | Rw7G039010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 475, 1569 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1928 |
| Acc36I | ACCTGC | 2 cut(s) | 475, 1569 |
| AccII | CGCG | 2 cut(s) | 121, 2313 |
| AccIII | TCCGGA | 1 cut(s) | 505 |
| AciI | CCGC | 8 cut(s) | 92, 119, 121, 170, 277, 482, 1046, 1858 |
| AclWI | GGATC | 7 cut(s) | 318, 543, 1154, 1486, 1826, 1849, 2376 |
| AcoI | YGGCCR | 2 cut(s) | 122, 1420 |
| AcsI | RAATTY | 4 cut(s) | 615, 963, 1366, 1652 |
| AcuI | CTGAAG | 6 cut(s) | 158, 249, 276, 444, 1233, 2297 |
| AdeI | CACNNNGTG | 1 cut(s) | 1670 |
| AfaI | GTAC | 8 cut(s) | 137, 1502, 1606, 1642, 1971, 2135, 2244, 2361 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 35, 1526, 1815, 1869 |
| AflII | CTTAAG | 1 cut(s) | 2074 |
| AjnI | CCWGG | 1 cut(s) | 2016 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 235, 267 |
| AluBI | AGCT | 6 cut(s) | 517, 1259, 1320, 2095, 2162, 2332 |
| AluI | AGCT | 6 cut(s) | 517, 1259, 1320, 2095, 2162, 2332 |
| Alw21I | GWGCWC | 2 cut(s) | 1777, 2144 |
| Alw26I | GTCTC | 1 cut(s) | 11 |
| Alw44I | GTGCAC | 1 cut(s) | 2140 |
| AlwI | GGATC | 7 cut(s) | 318, 543, 1154, 1486, 1826, 1849, 2376 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 83 |
| Aor13HI | TCCGGA | 1 cut(s) | 505 |
| AoxI | GGCC | 5 cut(s) | 122, 1420, 1458, 1827, 2126 |
| ApaLI | GTGCAC | 1 cut(s) | 2140 |
| ApeKI | GCWGC | 7 cut(s) | 83, 95, 98, 328, 514, 517, 2162 |
| ApoI | RAATTY | 4 cut(s) | 615, 963, 1366, 1652 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 592, 618, 1149 |
| AspA2I | CCTAGG | 1 cut(s) | 2176 |
| AspLEI | GCGC | 1 cut(s) | 1302 |
| AspS9I | GGNCC | 2 cut(s) | 1458, 1555 |
| AsuHPI | GGTGA | 3 cut(s) | 971, 1079, 2032 |
| AsuII | TTCGAA | 1 cut(s) | 969 |
| AvaII | GGWCC | 1 cut(s) | 1555 |
| AvrII | CCTAGG | 1 cut(s) | 2176 |
| BaeGI | GKGCMC | 1 cut(s) | 2144 |
| BalI | TGGCCA | 1 cut(s) | 1422 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2256, 2288 |
| Bbv12I | GWGCWC | 2 cut(s) | 1777, 2144 |
| BbvCI | CCTCAGC | 1 cut(s) | 1659 |
| BbvI | GCAGC | 7 cut(s) | 70, 82, 85, 340, 504, 526, 2149 |
| BccI | CCATC | 4 cut(s) | 133, 146, 1103, 1168 |
| BceAI | ACGGC | 1 cut(s) | 777 |
| BciT130I | CCWGG | 1 cut(s) | 2018 |
| BcoDI | GTCTC | 1 cut(s) | 11 |
| BfaI | CTAG | 6 cut(s) | 267, 1091, 1353, 1524, 2177, 2307 |
| BfmI | CTRYAG | 4 cut(s) | 87, 671, 978, 1260 |
| BfrI | CTTAAG | 1 cut(s) | 2074 |
| BfuAI | ACCTGC | 2 cut(s) | 475, 1569 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 337 |
| BglII | AGATCT | 1 cut(s) | 919 |
| BlnI | CCTAGG | 1 cut(s) | 2176 |
| BmcAI | AGTACT | 1 cut(s) | 1502 |
| Bme1390I | CCNGG | 1 cut(s) | 2018 |
| Bme18I | GGWCC | 1 cut(s) | 1555 |
| BmgT120I | GGNCC | 2 cut(s) | 1458, 1555 |
| BmiI | GGNNCC | 2 cut(s) | 840, 1735 |
| BmrFI | CCNGG | 1 cut(s) | 2018 |
| BmrI | ACTGGG | 1 cut(s) | 24 |
| BmsI | GCATC | 5 cut(s) | 229, 885, 1418, 1573, 1993 |
| BmuI | ACTGGG | 1 cut(s) | 24 |
| BpmI | CTGGAG | 1 cut(s) | 1318 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1659 |
| Bpu14I | TTCGAA | 1 cut(s) | 969 |
| BpuEI | CTTGAG | 1 cut(s) | 817 |
| BsaAI | YACGTR | 1 cut(s) | 1604 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1796 |
| BsaJI | CCNNGG | 6 cut(s) | 119, 910, 1461, 1569, 2166, 2176 |
| BsaWI | WCCGGW | 1 cut(s) | 505 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 100, 130, 427, 457 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 35, 1526, 1815, 1869 |
| Bse118I | RCCGGY | 2 cut(s) | 1888, 2128 |
| Bse1I | ACTGG | 4 cut(s) | 30, 1154, 1335, 1867 |
| Bse3DI | GCAATG | 2 cut(s) | 287, 1481 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1796 |
| BseAI | TCCGGA | 1 cut(s) | 505 |
| BseBI | CCWGG | 1 cut(s) | 2018 |
| BseDI | CCNNGG | 6 cut(s) | 119, 910, 1461, 1569, 2166, 2176 |
| BseGI | GGATG | 6 cut(s) | 220, 370, 769, 1546, 1564, 2069 |
| BseJI | GATNNNNATC | 1 cut(s) | 1796 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 35, 1526, 1815, 1869 |
| BseMI | GCAATG | 2 cut(s) | 287, 1481 |
| BseMII | CTCAG | 3 cut(s) | 824, 1650, 1845 |
| BseNI | ACTGG | 4 cut(s) | 30, 1154, 1335, 1867 |
| BseRI | GAGGAG | 2 cut(s) | 1037, 1700 |
| BseSI | GKGCMC | 1 cut(s) | 2144 |
| BseXI | GCAGC | 7 cut(s) | 70, 82, 85, 340, 504, 526, 2149 |
| Bsh1236I | CGCG | 2 cut(s) | 121, 2313 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2317 |
| BshFI | GGCC | 5 cut(s) | 124, 1422, 1460, 1829, 2128 |
| BsiEI | CGRYCG | 1 cut(s) | 2317 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1777, 2144 |
| BsiSI | CCGG | 3 cut(s) | 506, 1889, 2129 |
| BslFI | GGGAC | 1 cut(s) | 1916 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 35, 1526, 1815, 1869 |
| BsmAI | GTCTC | 1 cut(s) | 11 |
| BsmBI | CGTCTC | 1 cut(s) | 11 |
| BsmFI | GGGAC | 1 cut(s) | 1916 |
| BsmI | GAATGC | 1 cut(s) | 825 |
| BsnI | GGCC | 5 cut(s) | 124, 1422, 1460, 1829, 2128 |
| Bsp119I | TTCGAA | 1 cut(s) | 969 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1777, 2144 |
| Bsp13I | TCCGGA | 1 cut(s) | 505 |
| Bsp1407I | TGTACA | 1 cut(s) | 2359 |
| Bsp68I | TCGCGA | 1 cut(s) | 2313 |
| BspACI | CCGC | 8 cut(s) | 92, 119, 121, 170, 277, 482, 1046, 1858 |
| BspANI | GGCC | 5 cut(s) | 124, 1422, 1460, 1829, 2128 |
| BspCNI | CTCAG | 3 cut(s) | 823, 1651, 1844 |
| BspEI | TCCGGA | 1 cut(s) | 505 |
| BspFNI | CGCG | 2 cut(s) | 121, 2313 |
| BspLI | GGNNCC | 2 cut(s) | 840, 1735 |
| BspMI | ACCTGC | 2 cut(s) | 475, 1569 |
| BspPI | GGATC | 7 cut(s) | 318, 543, 1154, 1486, 1826, 1849, 2376 |
| BspT104I | TTCGAA | 1 cut(s) | 969 |
| BspTI | CTTAAG | 1 cut(s) | 2074 |
| BsrDI | GCAATG | 2 cut(s) | 287, 1481 |
| BsrFI | RCCGGY | 2 cut(s) | 1888, 2128 |
| BsrGI | TGTACA | 1 cut(s) | 2359 |
| BsrI | ACTGG | 4 cut(s) | 30, 1154, 1335, 1867 |
| BssAI | RCCGGY | 2 cut(s) | 1888, 2128 |
| BssECI | CCNNGG | 6 cut(s) | 119, 910, 1461, 1569, 2166, 2176 |
| BssT1I | CCWWGG | 5 cut(s) | 910, 1461, 1569, 2166, 2176 |
| Bst2UI | CCWGG | 1 cut(s) | 2018 |
| Bst4CI | ACNGT | 5 cut(s) | 380, 1537, 1779, 1974, 2247 |
| Bst6I | CTCTTC | 1 cut(s) | 9 |
| BstAFI | CTTAAG | 1 cut(s) | 2074 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 83, 1670, 1766 |
| BstAUI | TGTACA | 1 cut(s) | 2359 |
| BstBAI | YACGTR | 1 cut(s) | 1604 |
| BstBI | TTCGAA | 1 cut(s) | 969 |
| BstC8I | GCNNGC | 3 cut(s) | 1257, 1612, 1723 |
| BstDEI | CTNAG | 4 cut(s) | 810, 1007, 1659, 1831 |
| BstDSI | CCRYGG | 1 cut(s) | 119 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1524 |
| BstF5I | GGATG | 6 cut(s) | 220, 370, 769, 1546, 1564, 2069 |
| BstFNI | CGCG | 2 cut(s) | 121, 2313 |
| BstHHI | GCGC | 1 cut(s) | 1302 |
| BstMAI | GTCTC | 1 cut(s) | 11 |
| BstMCI | CGRYCG | 1 cut(s) | 2317 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 83, 89, 92, 98, 104, 337, 1670, 1731, 1766 |
| BstNI | CCWGG | 1 cut(s) | 2018 |
| BstNSI | RCATGY | 2 cut(s) | 1725, 1909 |
| BstSCI | CCNGG | 1 cut(s) | 2016 |
| BstSFI | CTRYAG | 4 cut(s) | 87, 671, 978, 1260 |
| BstSLI | GKGCMC | 1 cut(s) | 2144 |
| BstSNI | TACGTA | 1 cut(s) | 1604 |
| BstUI | CGCG | 2 cut(s) | 121, 2313 |
| BstV1I | GCAGC | 7 cut(s) | 70, 82, 85, 340, 504, 526, 2149 |
| BstX2I | RGATCY | 4 cut(s) | 535, 919, 1818, 2368 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1627 |
| BstYI | RGATCY | 4 cut(s) | 535, 919, 1818, 2368 |
| BsuRI | GGCC | 5 cut(s) | 124, 1422, 1460, 1829, 2128 |
| BtgI | CCRYGG | 1 cut(s) | 119 |
| BtgZI | GCGATG | 1 cut(s) | 1392 |
| BtsCI | GGATG | 6 cut(s) | 220, 370, 769, 1546, 1564, 2069 |
| BtsIMutI | CAGTG | 4 cut(s) | 1533, 1775, 1839, 1874 |
| BtuMI | TCGCGA | 1 cut(s) | 2313 |
| BveI | ACCTGC | 2 cut(s) | 475, 1569 |
| Cac8I | GCNNGC | 3 cut(s) | 1257, 1612, 1723 |
| CaiI | CAGNNNCTG | 1 cut(s) | 83 |
| CfoI | GCGC | 1 cut(s) | 1302 |
| Cfr10I | RCCGGY | 2 cut(s) | 1888, 2128 |
| Cfr13I | GGNCC | 2 cut(s) | 1458, 1555 |
| Cfr42I | CCGCGG | 1 cut(s) | 122 |
| CseI | GACGC | 1 cut(s) | 1931 |
| CsiI | ACCWGGT | 1 cut(s) | 2016 |
| Csp6I | GTAC | 8 cut(s) | 136, 1501, 1605, 1641, 1970, 2134, 2243, 2360 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2079, 2114 |
| CviAII | CATG | 8 cut(s) | 191, 352, 575, 754, 1475, 1635, 1722, 1906 |
| CviQI | GTAC | 8 cut(s) | 136, 1501, 1605, 1641, 1970, 2134, 2243, 2360 |
| DdeI | CTNAG | 4 cut(s) | 810, 1007, 1659, 1831 |
| DraI | TTTAAA | 2 cut(s) | 324, 640 |
| DraIII | CACNNNGTG | 1 cut(s) | 1670 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1928 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1928 |
| EaeI | YGGCCR | 2 cut(s) | 122, 1420 |
| Eam1104I | CTCTTC | 1 cut(s) | 9 |
| EarI | CTCTTC | 1 cut(s) | 9 |
| EciI | GGCGGA | 1 cut(s) | 1847 |
| Eco105I | TACGTA | 1 cut(s) | 1604 |
| Eco130I | CCWWGG | 5 cut(s) | 910, 1461, 1569, 2166, 2176 |
| Eco47I | GGWCC | 1 cut(s) | 1555 |
| Eco57I | CTGAAG | 6 cut(s) | 158, 249, 276, 444, 1233, 2297 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1524 |
| EcoRI | GAATTC | 1 cut(s) | 1652 |
| EcoRII | CCWGG | 1 cut(s) | 2016 |
| EcoT14I | CCWWGG | 5 cut(s) | 910, 1461, 1569, 2166, 2176 |
| EcoT22I | ATGCAT | 1 cut(s) | 1727 |
| ErhI | CCWWGG | 5 cut(s) | 910, 1461, 1569, 2166, 2176 |
| Esp3I | CGTCTC | 1 cut(s) | 11 |
| FaeI | CATG | 8 cut(s) | 194, 355, 578, 757, 1478, 1638, 1725, 1909 |
| FaqI | GGGAC | 1 cut(s) | 1916 |
| FatI | CATG | 8 cut(s) | 190, 351, 574, 753, 1474, 1634, 1721, 1905 |
| FauNDI | CATATG | 1 cut(s) | 1727 |
| FokI | GGATG | 6 cut(s) | 207, 357, 756, 1533, 1551, 2056 |
| FspBI | CTAG | 6 cut(s) | 267, 1091, 1353, 1524, 2177, 2307 |
| GlaI | GCGC | 1 cut(s) | 1301 |
| GsuI | CTGGAG | 1 cut(s) | 1318 |
| HaeIII | GGCC | 5 cut(s) | 124, 1422, 1460, 1829, 2128 |
| HapII | CCGG | 3 cut(s) | 506, 1889, 2129 |
| HgaI | GACGC | 1 cut(s) | 1931 |
| HhaI | GCGC | 1 cut(s) | 1302 |
| Hin1II | CATG | 8 cut(s) | 194, 355, 578, 757, 1478, 1638, 1725, 1909 |
| Hin6I | GCGC | 1 cut(s) | 1300 |
| HinP1I | GCGC | 1 cut(s) | 1300 |
| HindIII | AAGCTT | 2 cut(s) | 2093, 2330 |
| HinfI | GANTC | 9 cut(s) | 451, 686, 1084, 1193, 1325, 1430, 1645, 2201, 2297 |
| HpaII | CCGG | 3 cut(s) | 506, 1889, 2129 |
| HphI | GGTGA | 3 cut(s) | 971, 1079, 2032 |
| Hpy166II | GTNNAC | 5 cut(s) | 136, 2134, 2142, 2225, 2341 |
| Hpy188I | TCNGA | 9 cut(s) | 177, 424, 450, 668, 813, 1324, 1435, 1854, 2277 |
| Hpy188III | TCNNGA | 9 cut(s) | 227, 254, 506, 741, 1163, 1451, 1649, 2312, 2389 |
| Hpy8I | GTNNAC | 5 cut(s) | 136, 2134, 2142, 2225, 2341 |
| HpyAV | CCTTC | 8 cut(s) | 419, 603, 783, 1128, 1889, 2272, 2386, 2392 |
| HpyCH4III | ACNGT | 5 cut(s) | 380, 1537, 1779, 1974, 2247 |
| HpyCH4IV | ACGT | 3 cut(s) | 1513, 1603, 2241 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 83, 89, 92, 98, 104, 337, 1670, 1731, 1766 |
| HpyF3I | CTNAG | 4 cut(s) | 810, 1007, 1659, 1831 |
| HpySE526I | ACGT | 3 cut(s) | 1513, 1603, 2241 |
| Hsp92II | CATG | 8 cut(s) | 194, 355, 578, 757, 1478, 1638, 1725, 1909 |
| HspAI | GCGC | 1 cut(s) | 1300 |
| Kpn2I | TCCGGA | 1 cut(s) | 505 |
| KspI | CCGCGG | 1 cut(s) | 122 |
| LmnI | GCTCC | 6 cut(s) | 631, 645, 898, 1374, 1739, 1772 |
| Lsp1109I | GCAGC | 7 cut(s) | 70, 82, 85, 340, 504, 526, 2149 |
| LweI | GCATC | 5 cut(s) | 229, 885, 1418, 1573, 1993 |
| MabI | ACCWGGT | 1 cut(s) | 2016 |
| MaeI | CTAG | 6 cut(s) | 267, 1091, 1353, 1524, 2177, 2307 |
| MaeII | ACGT | 3 cut(s) | 1513, 1603, 2241 |
| MaeIII | GTNAC | 6 cut(s) | 180, 193, 852, 950, 1085, 2268 |
| MfeI | CAATTG | 1 cut(s) | 1992 |
| MflI | RGATCY | 4 cut(s) | 535, 919, 1818, 2368 |
| MhlI | GDGCHC | 2 cut(s) | 1777, 2144 |
| MlsI | TGGCCA | 1 cut(s) | 1422 |
| MluNI | TGGCCA | 1 cut(s) | 1422 |
| MlyI | GAGTC | 3 cut(s) | 1093, 1654, 2291 |
| MmeI | TCCRAC | 2 cut(s) | 876, 1761 |
| Mox20I | TGGCCA | 1 cut(s) | 1422 |
| Mph1103I | ATGCAT | 1 cut(s) | 1727 |
| MroI | TCCGGA | 1 cut(s) | 505 |
| MroXI | GAANNNNTTC | 3 cut(s) | 592, 618, 1149 |
| MscI | TGGCCA | 1 cut(s) | 1422 |
| MseI | TTAA | 8 cut(s) | 323, 639, 803, 905, 1119, 1539, 2075, 2186 |
| MslI | CAYNNNNRTG | 3 cut(s) | 861, 1726, 2348 |
| Msp20I | TGGCCA | 1 cut(s) | 1422 |
| MspA1I | CMGCKG | 3 cut(s) | 121, 517, 1046 |
| MspCI | CTTAAG | 1 cut(s) | 2074 |
| MspI | CCGG | 3 cut(s) | 506, 1889, 2129 |
| MspR9I | CCNGG | 1 cut(s) | 2018 |
| MunI | CAATTG | 1 cut(s) | 1992 |
| Mva1269I | GAATGC | 1 cut(s) | 825 |
| MvaI | CCWGG | 1 cut(s) | 2018 |
| MvnI | CGCG | 2 cut(s) | 121, 2313 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 83, 89, 92, 98, 104, 337, 1670, 1731, 1766 |
| NdeI | CATATG | 1 cut(s) | 1727 |
| NlaIII | CATG | 8 cut(s) | 194, 355, 578, 757, 1478, 1638, 1725, 1909 |
| NlaIV | GGNNCC | 2 cut(s) | 840, 1735 |
| NmuCI | GTSAC | 2 cut(s) | 950, 1085 |
| NruI | TCGCGA | 1 cut(s) | 2313 |
| NsiI | ATGCAT | 1 cut(s) | 1727 |
| NspI | RCATGY | 2 cut(s) | 1725, 1909 |
| NspV | TTCGAA | 1 cut(s) | 969 |
| PaeI | GCATGC | 1 cut(s) | 1725 |
| PaqCI | CACCTGC | 2 cut(s) | 475, 1569 |
| PctI | GAATGC | 1 cut(s) | 825 |
| PdmI | GAANNNNTTC | 3 cut(s) | 592, 618, 1149 |
| PfeI | GAWTC | 6 cut(s) | 451, 686, 1193, 1325, 1430, 2201 |
| Ple19I | CGATCG | 1 cut(s) | 2317 |
| PleI | GAGTC | 3 cut(s) | 1092, 1653, 2291 |
| PpsI | GAGTC | 3 cut(s) | 1092, 1653, 2291 |
| Ppu21I | YACGTR | 1 cut(s) | 1604 |
| Psp6I | CCWGG | 1 cut(s) | 2016 |
| PspGI | CCWGG | 1 cut(s) | 2016 |
| PspN4I | GGNNCC | 2 cut(s) | 840, 1735 |
| PspPI | GGNCC | 2 cut(s) | 1458, 1555 |
| PstNI | CAGNNNCTG | 1 cut(s) | 83 |
| PsuI | RGATCY | 4 cut(s) | 535, 919, 1818, 2368 |
| PvuI | CGATCG | 1 cut(s) | 2317 |
| PvuII | CAGCTG | 1 cut(s) | 517 |
| RruI | TCGCGA | 1 cut(s) | 2313 |
| RsaI | GTAC | 8 cut(s) | 137, 1502, 1606, 1642, 1971, 2135, 2244, 2361 |
| RsaNI | GTAC | 8 cut(s) | 136, 1501, 1605, 1641, 1970, 2134, 2243, 2360 |
| RseI | CAYNNNNRTG | 3 cut(s) | 861, 1726, 2348 |
| SacII | CCGCGG | 1 cut(s) | 122 |
| SaqAI | TTAA | 8 cut(s) | 323, 639, 803, 905, 1119, 1539, 2075, 2186 |
| Sau96I | GGNCC | 2 cut(s) | 1458, 1555 |
| ScaI | AGTACT | 1 cut(s) | 1502 |
| SchI | GAGTC | 3 cut(s) | 1093, 1654, 2291 |
| ScrFI | CCNGG | 1 cut(s) | 2018 |
| SduI | GDGCHC | 2 cut(s) | 1777, 2144 |
| SexAI | ACCWGGT | 1 cut(s) | 2016 |
| SfaNI | GCATC | 5 cut(s) | 229, 885, 1418, 1573, 1993 |
| SfcI | CTRYAG | 4 cut(s) | 87, 671, 978, 1260 |
| Sfr303I | CCGCGG | 1 cut(s) | 122 |
| SfuI | TTCGAA | 1 cut(s) | 969 |
| SgrBI | CCGCGG | 1 cut(s) | 122 |
| SinI | GGWCC | 1 cut(s) | 1555 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 861, 1726, 2348 |
| SmlI | CTYRAG | 2 cut(s) | 832, 2074 |
| SmoI | CTYRAG | 2 cut(s) | 832, 2074 |
| SnaBI | TACGTA | 1 cut(s) | 1604 |
| SphI | GCATGC | 1 cut(s) | 1725 |
| SsiI | CCGC | 8 cut(s) | 92, 119, 121, 170, 277, 482, 1046, 1858 |
| SspMI | CTAG | 6 cut(s) | 267, 1091, 1353, 1524, 2177, 2307 |
| StyD4I | CCNGG | 1 cut(s) | 2016 |
| StyI | CCWWGG | 5 cut(s) | 910, 1461, 1569, 2166, 2176 |
| TaaI | ACNGT | 5 cut(s) | 380, 1537, 1779, 1974, 2247 |
| TaiI | ACGT | 3 cut(s) | 1516, 1606, 2244 |
| TaqI | TCGA | 5 cut(s) | 477, 969, 1976, 2295, 2317 |
| TatI | WGTACW | 4 cut(s) | 135, 1500, 1969, 2359 |
| TauI | GCSGC | 3 cut(s) | 95, 124, 280 |
| TfiI | GAWTC | 6 cut(s) | 451, 686, 1193, 1325, 1430, 2201 |
| Tru1I | TTAA | 8 cut(s) | 323, 639, 803, 905, 1119, 1539, 2075, 2186 |
| Tru9I | TTAA | 8 cut(s) | 323, 639, 803, 905, 1119, 1539, 2075, 2186 |
| TscAI | CASTG | 4 cut(s) | 1540, 1782, 1839, 1874 |
| TseFI | GTSAC | 2 cut(s) | 950, 1085 |
| TseI | GCWGC | 7 cut(s) | 83, 95, 98, 328, 514, 517, 2162 |
| Tsp45I | GTSAC | 2 cut(s) | 950, 1085 |
| TspGWI | ACGGA | 5 cut(s) | 74, 658, 1415, 2210, 2381 |
| TspRI | CASTG | 4 cut(s) | 1540, 1782, 1839, 1874 |
| Vha464I | CTTAAG | 1 cut(s) | 2074 |
| VneI | GTGCAC | 1 cut(s) | 2140 |
| VpaK11BI | GGWCC | 1 cut(s) | 1555 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1524 |
| XapI | RAATTY | 4 cut(s) | 615, 963, 1366, 1652 |
| XceI | RCATGY | 2 cut(s) | 1725, 1909 |
| XmaJI | CCTAGG | 1 cut(s) | 2176 |
| XmnI | GAANNNNTTC | 3 cut(s) | 592, 618, 1149 |
| XspI | CTAG | 6 cut(s) | 267, 1091, 1353, 1524, 2177, 2307 |
| ZrmI | AGTACT | 1 cut(s) | 1502 |
| Zsp2I | ATGCAT | 1 cut(s) | 1727 |