Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G35560 AT5G35560 |
| fragaria_vesca | FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 |
| malus_domestica | MD00G1142500.v1.1 MD02G1088900.v1.1 MD02G1089000.v1.1 MD15G1216100.v1.1 |
| prunus_persica | Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 |
| pyrus_communis | pycom15g19170 |
| rosa_chinensis | RchiOBHm_Chr2g0094551 |
| rosa_laevigata | RLG00000016501 |
| rosa_multiflora | Rmu_sc0004359.1_g000040 |
| rosa_roxburghii | Rroxscaffold_2G00147070 |
| rosa_rugosa | Rorug02G0044800 Rorug02G0044900 Rorug02G0045000 Rorug02G0045100 Rorug02G0045100 Rorug02G0045100 |
| rosa_samantha | Rh2AG093000 Rh2BG093300 Rh2CG095700 Rh2DG092100 |
| rosa_wichuraiana | Rw7G039010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 744 |
| AccB1I | GGYRCC | 1 cut(s) | 98 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 410 |
| AccII | CGCG | 2 cut(s) | 111, 864 |
| AccIII | TCCGGA | 1 cut(s) | 172 |
| AclWI | GGATC | 7 cut(s) | 183, 314, 327, 485, 638, 810, 1050 |
| AcoI | YGGCCR | 2 cut(s) | 106, 952 |
| AcsI | RAATTY | 1 cut(s) | 607 |
| AcyI | GRCGYC | 1 cut(s) | 99 |
| AfaI | GTAC | 5 cut(s) | 164, 231, 269, 597, 1037 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 410, 470, 500, 581, 653, 668, 950, 998, 1069 |
| AgsI | TTSAA | 5 cut(s) | 434, 511, 667, 884, 899 |
| AjnI | CCWGG | 6 cut(s) | 193, 322, 415, 562, 589, 628 |
| Alw21I | GWGCWC | 1 cut(s) | 316 |
| Alw26I | GTCTC | 5 cut(s) | 330, 468, 684, 918, 1071 |
| Alw44I | GTGCAC | 1 cut(s) | 312 |
| AlwI | GGATC | 7 cut(s) | 183, 314, 327, 485, 638, 810, 1050 |
| Ama87I | CYCGRG | 1 cut(s) | 7 |
| Aor13HI | TCCGGA | 1 cut(s) | 172 |
| AoxI | GGCC | 7 cut(s) | 106, 401, 419, 706, 830, 952, 1028 |
| ApaLI | GTGCAC | 1 cut(s) | 312 |
| ApeKI | GCWGC | 3 cut(s) | 54, 114, 730 |
| ApoI | RAATTY | 1 cut(s) | 607 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 985 |
| AspLEI | GCGC | 2 cut(s) | 101, 462 |
| AspS9I | GGNCC | 9 cut(s) | 136, 284, 401, 413, 419, 526, 560, 632, 707 |
| AsuC2I | CCSGG | 1 cut(s) | 129 |
| AsuHPI | GGTGA | 3 cut(s) | 336, 915, 981 |
| AvaI | CYCGRG | 1 cut(s) | 7 |
| AvaII | GGWCC | 6 cut(s) | 136, 284, 413, 526, 560, 632 |
| BaeGI | GKGCMC | 2 cut(s) | 316, 964 |
| BamHI | GGATCC | 1 cut(s) | 319 |
| BanI | GGYRCC | 1 cut(s) | 98 |
| BanII | GRGCYC | 2 cut(s) | 8, 129 |
| BauI | CACGAG | 2 cut(s) | 143, 687 |
| BbsI | GAAGAC | 1 cut(s) | 664 |
| Bbv12I | GWGCWC | 1 cut(s) | 316 |
| BbvI | GCAGC | 3 cut(s) | 66, 126, 717 |
| BccI | CCATC | 5 cut(s) | 45, 392, 551, 698, 951 |
| BceAI | ACGGC | 4 cut(s) | 100, 406, 969, 1047 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 43, 77 |
| BciT130I | CCWGG | 6 cut(s) | 195, 324, 417, 564, 591, 630 |
| BcnI | CCSGG | 1 cut(s) | 129 |
| BcoDI | GTCTC | 5 cut(s) | 330, 468, 684, 918, 1071 |
| BfaI | CTAG | 4 cut(s) | 395, 618, 699, 972 |
| BfmI | CTRYAG | 3 cut(s) | 256, 673, 805 |
| BfoI | RGCGCY | 1 cut(s) | 102 |
| BfuAI | ACCTGC | 1 cut(s) | 744 |
| BisI | GCNGC | 6 cut(s) | 55, 97, 109, 112, 115, 731 |
| BlsI | GCNGC | 6 cut(s) | 56, 98, 110, 113, 116, 732 |
| Bme1390I | CCNGG | 7 cut(s) | 129, 195, 324, 417, 564, 591, 630 |
| Bme18I | GGWCC | 6 cut(s) | 136, 284, 413, 526, 560, 632 |
| BmeT110I | CYCGRG | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 9 cut(s) | 136, 284, 401, 413, 419, 526, 560, 632, 707 |
| BmiI | GGNNCC | 4 cut(s) | 100, 321, 527, 709 |
| BmrFI | CCNGG | 7 cut(s) | 129, 195, 324, 417, 564, 591, 630 |
| BmsI | GCATC | 2 cut(s) | 232, 958 |
| BoxI | GACNNNNGTC | 1 cut(s) | 910 |
| BpiI | GAAGAC | 1 cut(s) | 664 |
| BpuMI | CCSGG | 1 cut(s) | 129 |
| BsaAI | YACGTR | 1 cut(s) | 209 |
| BsaBI | GATNNNNATC | 1 cut(s) | 246 |
| BsaHI | GRCGYC | 1 cut(s) | 99 |
| BsaI | GGTCTC | 2 cut(s) | 684, 1071 |
| BsaWI | WCCGGW | 1 cut(s) | 172 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 859, 889 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 410, 470, 500, 581, 653, 668, 950, 998, 1069 |
| Bse118I | RCCGGY | 3 cut(s) | 101, 185, 1026 |
| Bse1I | ACTGG | 1 cut(s) | 482 |
| Bse8I | GATNNNNATC | 1 cut(s) | 246 |
| BseAI | TCCGGA | 1 cut(s) | 172 |
| BseBI | CCWGG | 6 cut(s) | 195, 324, 417, 564, 591, 630 |
| BseGI | GGATG | 1 cut(s) | 247 |
| BseJI | GATNNNNATC | 1 cut(s) | 246 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 410, 470, 500, 581, 653, 668, 950, 998, 1069 |
| BseMII | CTCAG | 4 cut(s) | 64, 173, 255, 810 |
| BseNI | ACTGG | 1 cut(s) | 482 |
| BseRI | GAGGAG | 6 cut(s) | 32, 105, 141, 372, 672, 675 |
| BseSI | GKGCMC | 2 cut(s) | 316, 964 |
| BseXI | GCAGC | 3 cut(s) | 66, 126, 717 |
| BseYI | CCCAGC | 1 cut(s) | 725 |
| Bsh1236I | CGCG | 2 cut(s) | 111, 864 |
| BshFI | GGCC | 7 cut(s) | 108, 403, 421, 708, 832, 954, 1030 |
| BshNI | GGYRCC | 1 cut(s) | 98 |
| BsiHKAI | GWGCWC | 1 cut(s) | 316 |
| BsiHKCI | CYCGRG | 1 cut(s) | 7 |
| BsiSI | CCGG | 5 cut(s) | 102, 129, 173, 186, 1027 |
| BslFI | GGGAC | 3 cut(s) | 54, 539, 1062 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 410, 470, 500, 581, 653, 668, 950, 998, 1069 |
| BsmAI | GTCTC | 5 cut(s) | 330, 468, 684, 918, 1071 |
| BsmFI | GGGAC | 3 cut(s) | 54, 539, 1062 |
| BsnI | GGCC | 7 cut(s) | 108, 403, 421, 708, 832, 954, 1030 |
| Bso31I | GGTCTC | 2 cut(s) | 684, 1071 |
| BsoBI | CYCGRG | 1 cut(s) | 7 |
| Bsp1286I | GDGCHC | 4 cut(s) | 8, 129, 316, 964 |
| Bsp13I | TCCGGA | 1 cut(s) | 172 |
| Bsp1407I | TGTACA | 1 cut(s) | 1035 |
| Bsp143I | GATC | 9 cut(s) | 175, 247, 319, 490, 643, 815, 859, 1042, 1057 |
| Bsp19I | CCATGG | 1 cut(s) | 652 |
| BspANI | GGCC | 7 cut(s) | 108, 403, 421, 708, 832, 954, 1030 |
| BspCNI | CTCAG | 4 cut(s) | 63, 172, 256, 809 |
| BspEI | TCCGGA | 1 cut(s) | 172 |
| BspFNI | CGCG | 2 cut(s) | 111, 864 |
| BspLI | GGNNCC | 4 cut(s) | 100, 321, 527, 709 |
| BspMI | ACCTGC | 1 cut(s) | 744 |
| BspPI | GGATC | 7 cut(s) | 183, 314, 327, 485, 638, 810, 1050 |
| BspT107I | GGYRCC | 1 cut(s) | 98 |
| BspTNI | GGTCTC | 2 cut(s) | 684, 1071 |
| BsrFI | RCCGGY | 3 cut(s) | 101, 185, 1026 |
| BsrGI | TGTACA | 1 cut(s) | 1035 |
| BsrI | ACTGG | 1 cut(s) | 482 |
| BssAI | RCCGGY | 3 cut(s) | 101, 185, 1026 |
| BssMI | GATC | 9 cut(s) | 175, 247, 319, 490, 643, 815, 859, 1042, 1057 |
| BssNI | GRCGYC | 1 cut(s) | 99 |
| BssSI | CACGAG | 2 cut(s) | 143, 687 |
| BssT1I | CCWWGG | 3 cut(s) | 464, 652, 740 |
| Bst2BI | CACGAG | 2 cut(s) | 143, 687 |
| Bst2UI | CCWGG | 6 cut(s) | 195, 324, 417, 564, 591, 630 |
| Bst4CI | ACNGT | 6 cut(s) | 260, 272, 533, 912, 950, 993 |
| Bst6I | CTCTTC | 2 cut(s) | 51, 772 |
| BstACI | GRCGYC | 1 cut(s) | 99 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 968 |
| BstAUI | TGTACA | 1 cut(s) | 1035 |
| BstBAI | YACGTR | 1 cut(s) | 209 |
| BstC8I | GCNNGC | 1 cut(s) | 373 |
| BstDEI | CTNAG | 4 cut(s) | 50, 159, 264, 796 |
| BstDSI | CCRYGG | 5 cut(s) | 109, 404, 652, 949, 1063 |
| BstEII | GGTNACC | 1 cut(s) | 188 |
| BstF5I | GGATG | 1 cut(s) | 247 |
| BstFNI | CGCG | 2 cut(s) | 111, 864 |
| BstH2I | RGCGCY | 1 cut(s) | 102 |
| BstHHI | GCGC | 2 cut(s) | 101, 462 |
| BstKTI | GATC | 9 cut(s) | 178, 250, 322, 493, 646, 818, 862, 1045, 1060 |
| BstMAI | GTCTC | 5 cut(s) | 330, 468, 684, 918, 1071 |
| BstMBI | GATC | 9 cut(s) | 175, 247, 319, 490, 643, 815, 859, 1042, 1057 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 40, 93, 105, 114, 968 |
| BstNI | CCWGG | 6 cut(s) | 195, 324, 417, 564, 591, 630 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 910 |
| BstPI | GGTNACC | 1 cut(s) | 188 |
| BstSCI | CCNGG | 7 cut(s) | 127, 193, 322, 415, 562, 589, 628 |
| BstSFI | CTRYAG | 3 cut(s) | 256, 673, 805 |
| BstSLI | GKGCMC | 2 cut(s) | 316, 964 |
| BstUI | CGCG | 2 cut(s) | 111, 864 |
| BstV1I | GCAGC | 3 cut(s) | 66, 126, 717 |
| BstV2I | GAAGAC | 1 cut(s) | 664 |
| BstX2I | RGATCY | 2 cut(s) | 319, 815 |
| BstYI | RGATCY | 2 cut(s) | 319, 815 |
| BsuRI | GGCC | 7 cut(s) | 108, 403, 421, 708, 832, 954, 1030 |
| BtgI | CCRYGG | 5 cut(s) | 109, 404, 652, 949, 1063 |
| BtgZI | GCGATG | 1 cut(s) | 236 |
| BtsCI | GGATG | 1 cut(s) | 247 |
| BtsIMutI | CAGTG | 2 cut(s) | 529, 908 |
| BveI | ACCTGC | 1 cut(s) | 744 |
| Cac8I | GCNNGC | 1 cut(s) | 373 |
| CfoI | GCGC | 2 cut(s) | 101, 462 |
| Cfr10I | RCCGGY | 3 cut(s) | 101, 185, 1026 |
| Cfr13I | GGNCC | 9 cut(s) | 136, 284, 401, 413, 419, 526, 560, 632, 707 |
| Cfr42I | CCGCGG | 1 cut(s) | 112 |
| CseI | GACGC | 1 cut(s) | 630 |
| Csp6I | GTAC | 5 cut(s) | 163, 230, 268, 596, 1036 |
| CviAII | CATG | 5 cut(s) | 653, 746, 965, 1039, 1069 |
| CviQI | GTAC | 5 cut(s) | 163, 230, 268, 596, 1036 |
| DdeI | CTNAG | 4 cut(s) | 50, 159, 264, 796 |
| DinI | GGCGCC | 1 cut(s) | 100 |
| DpnI | GATC | 9 cut(s) | 177, 249, 321, 492, 645, 817, 861, 1044, 1059 |
| DpnII | GATC | 9 cut(s) | 175, 247, 319, 490, 643, 815, 859, 1042, 1057 |
| EaeI | YGGCCR | 2 cut(s) | 106, 952 |
| Eam1104I | CTCTTC | 2 cut(s) | 51, 772 |
| EarI | CTCTTC | 2 cut(s) | 51, 772 |
| EciI | GGCGGA | 2 cut(s) | 102, 603 |
| Eco130I | CCWWGG | 3 cut(s) | 464, 652, 740 |
| Eco24I | GRGCYC | 2 cut(s) | 8, 129 |
| Eco31I | GGTCTC | 2 cut(s) | 684, 1071 |
| Eco32I | GATATC | 2 cut(s) | 332, 587 |
| Eco47I | GGWCC | 6 cut(s) | 136, 284, 413, 526, 560, 632 |
| Eco88I | CYCGRG | 1 cut(s) | 7 |
| Eco91I | GGTNACC | 1 cut(s) | 188 |
| EcoO65I | GGTNACC | 1 cut(s) | 188 |
| EcoRII | CCWGG | 6 cut(s) | 193, 322, 415, 562, 589, 628 |
| EcoRV | GATATC | 2 cut(s) | 332, 587 |
| EcoT14I | CCWWGG | 3 cut(s) | 464, 652, 740 |
| EcoT38I | GRGCYC | 2 cut(s) | 8, 129 |
| EgeI | GGCGCC | 1 cut(s) | 100 |
| EheI | GGCGCC | 1 cut(s) | 100 |
| ErhI | CCWWGG | 3 cut(s) | 464, 652, 740 |
| FaeI | CATG | 5 cut(s) | 656, 749, 968, 1042, 1072 |
| FaqI | GGGAC | 3 cut(s) | 54, 539, 1062 |
| FatI | CATG | 5 cut(s) | 652, 745, 964, 1038, 1068 |
| FauI | CCCGC | 2 cut(s) | 516, 857 |
| Fnu4HI | GCNGC | 6 cut(s) | 55, 97, 109, 112, 115, 731 |
| FokI | GGATG | 1 cut(s) | 254 |
| FriOI | GRGCYC | 2 cut(s) | 8, 129 |
| Fsp4HI | GCNGC | 6 cut(s) | 55, 97, 109, 112, 115, 731 |
| FspBI | CTAG | 4 cut(s) | 395, 618, 699, 972 |
| GlaI | GCGC | 2 cut(s) | 100, 461 |
| GluI | GCNGC | 6 cut(s) | 55, 97, 109, 112, 115, 731 |
| GsaI | CCCAGC | 1 cut(s) | 729 |
| HaeII | RGCGCY | 1 cut(s) | 102 |
| HaeIII | GGCC | 7 cut(s) | 108, 403, 421, 708, 832, 954, 1030 |
| HapII | CCGG | 5 cut(s) | 102, 129, 173, 186, 1027 |
| HgaI | GACGC | 1 cut(s) | 630 |
| HhaI | GCGC | 2 cut(s) | 101, 462 |
| Hin1I | GRCGYC | 1 cut(s) | 99 |
| Hin1II | CATG | 5 cut(s) | 656, 749, 968, 1042, 1072 |
| Hin6I | GCGC | 2 cut(s) | 99, 460 |
| HinP1I | GCGC | 2 cut(s) | 99, 460 |
| HpaII | CCGG | 5 cut(s) | 102, 129, 173, 186, 1027 |
| HphI | GGTGA | 3 cut(s) | 336, 915, 981 |
| Hpy166II | GTNNAC | 5 cut(s) | 165, 287, 314, 596, 989 |
| Hpy188I | TCNGA | 3 cut(s) | 265, 428, 799 |
| Hpy188III | TCNNGA | 6 cut(s) | 9, 143, 173, 335, 395, 761 |
| Hpy8I | GTNNAC | 5 cut(s) | 165, 287, 314, 596, 989 |
| Hpy99I | CGWCG | 3 cut(s) | 65, 86, 237 |
| HpyAV | CCTTC | 6 cut(s) | 357, 428, 464, 573, 743, 930 |
| HpyCH4III | ACNGT | 6 cut(s) | 260, 272, 533, 912, 950, 993 |
| HpyCH4IV | ACGT | 2 cut(s) | 208, 232 |
| HpyCH4V | TGCA | 5 cut(s) | 245, 314, 518, 543, 1094 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 40, 93, 105, 114, 968 |
| HpyF3I | CTNAG | 4 cut(s) | 50, 159, 264, 796 |
| HpySE526I | ACGT | 2 cut(s) | 208, 232 |
| Hsp92I | GRCGYC | 1 cut(s) | 99 |
| Hsp92II | CATG | 5 cut(s) | 656, 749, 968, 1042, 1072 |
| HspAI | GCGC | 2 cut(s) | 99, 460 |
| KasI | GGCGCC | 1 cut(s) | 98 |
| Kpn2I | TCCGGA | 1 cut(s) | 172 |
| KspI | CCGCGG | 1 cut(s) | 112 |
| Kzo9I | GATC | 9 cut(s) | 175, 247, 319, 490, 643, 815, 859, 1042, 1057 |
| LmnI | GCTCC | 1 cut(s) | 19 |
| Lsp1109I | GCAGC | 3 cut(s) | 66, 126, 717 |
| LweI | GCATC | 2 cut(s) | 232, 958 |
| MaeI | CTAG | 4 cut(s) | 395, 618, 699, 972 |
| MaeII | ACGT | 2 cut(s) | 208, 232 |
| MaeIII | GTNAC | 4 cut(s) | 140, 179, 188, 533 |
| MalI | GATC | 9 cut(s) | 177, 249, 321, 492, 645, 817, 861, 1044, 1059 |
| MboI | GATC | 9 cut(s) | 175, 247, 319, 490, 643, 815, 859, 1042, 1057 |
| MboII | GAAGA | 4 cut(s) | 38, 669, 789, 825 |
| MfeI | CAATTG | 1 cut(s) | 639 |
| MflI | RGATCY | 2 cut(s) | 319, 815 |
| MhlI | GDGCHC | 4 cut(s) | 8, 129, 316, 964 |
| MluCI | AATT | 3 cut(s) | 607, 639, 1083 |
| Mly113I | GGCGCC | 1 cut(s) | 99 |
| MmeI | TCCRAC | 1 cut(s) | 768 |
| MroI | TCCGGA | 1 cut(s) | 172 |
| MroXI | GAANNNNTTC | 1 cut(s) | 985 |
| MseI | TTAA | 2 cut(s) | 995, 1099 |
| MslI | CAYNNNNRTG | 1 cut(s) | 279 |
| MspA1I | CMGCKG | 1 cut(s) | 111 |
| MspI | CCGG | 5 cut(s) | 102, 129, 173, 186, 1027 |
| MspR9I | CCNGG | 7 cut(s) | 129, 195, 324, 417, 564, 591, 630 |
| MunI | CAATTG | 1 cut(s) | 639 |
| MvaI | CCWGG | 6 cut(s) | 195, 324, 417, 564, 591, 630 |
| MvnI | CGCG | 2 cut(s) | 111, 864 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 40, 93, 105, 114, 968 |
| NarI | GGCGCC | 1 cut(s) | 99 |
| NciI | CCSGG | 1 cut(s) | 129 |
| NcoI | CCATGG | 1 cut(s) | 652 |
| NdeII | GATC | 9 cut(s) | 175, 247, 319, 490, 643, 815, 859, 1042, 1057 |
| NlaIII | CATG | 5 cut(s) | 656, 749, 968, 1042, 1072 |
| NlaIV | GGNNCC | 4 cut(s) | 100, 321, 527, 709 |
| NmuCI | GTSAC | 1 cut(s) | 140 |
| PaeR7I | CTCGAG | 1 cut(s) | 7 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 175 |
| PdmI | GAANNNNTTC | 1 cut(s) | 985 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 410 |
| PkrI | GCNGC | 6 cut(s) | 56, 98, 110, 113, 116, 732 |
| PluTI | GGCGCC | 1 cut(s) | 102 |
| Ppu21I | YACGTR | 1 cut(s) | 209 |
| PshAI | GACNNNNGTC | 1 cut(s) | 910 |
| Psp6I | CCWGG | 6 cut(s) | 193, 322, 415, 562, 589, 628 |
| PspEI | GGTNACC | 1 cut(s) | 188 |
| PspFI | CCCAGC | 1 cut(s) | 725 |
| PspGI | CCWGG | 6 cut(s) | 193, 322, 415, 562, 589, 628 |
| PspN4I | GGNNCC | 4 cut(s) | 100, 321, 527, 709 |
| PspPI | GGNCC | 9 cut(s) | 136, 284, 401, 413, 419, 526, 560, 632, 707 |
| PsuI | RGATCY | 2 cut(s) | 319, 815 |
| RsaI | GTAC | 5 cut(s) | 164, 231, 269, 597, 1037 |
| RsaNI | GTAC | 5 cut(s) | 163, 230, 268, 596, 1036 |
| RseI | CAYNNNNRTG | 1 cut(s) | 279 |
| SacII | CCGCGG | 1 cut(s) | 112 |
| SaqAI | TTAA | 2 cut(s) | 995, 1099 |
| SatI | GCNGC | 6 cut(s) | 55, 97, 109, 112, 115, 731 |
| Sau3AI | GATC | 9 cut(s) | 175, 247, 319, 490, 643, 815, 859, 1042, 1057 |
| Sau96I | GGNCC | 9 cut(s) | 136, 284, 401, 413, 419, 526, 560, 632, 707 |
| ScrFI | CCNGG | 7 cut(s) | 129, 195, 324, 417, 564, 591, 630 |
| SduI | GDGCHC | 4 cut(s) | 8, 129, 316, 964 |
| SfaNI | GCATC | 2 cut(s) | 232, 958 |
| SfcI | CTRYAG | 3 cut(s) | 256, 673, 805 |
| SfoI | GGCGCC | 1 cut(s) | 100 |
| Sfr274I | CTCGAG | 1 cut(s) | 7 |
| Sfr303I | CCGCGG | 1 cut(s) | 112 |
| SgrAI | CRCCGGYG | 1 cut(s) | 101 |
| SgrBI | CCGCGG | 1 cut(s) | 112 |
| SinI | GGWCC | 6 cut(s) | 136, 284, 413, 526, 560, 632 |
| SlaI | CTCGAG | 1 cut(s) | 7 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 279 |
| SmlI | CTYRAG | 1 cut(s) | 7 |
| SmoI | CTYRAG | 1 cut(s) | 7 |
| Sse9I | AATT | 3 cut(s) | 607, 639, 1083 |
| SspDI | GGCGCC | 1 cut(s) | 98 |
| SspMI | CTAG | 4 cut(s) | 395, 618, 699, 972 |
| StyD4I | CCNGG | 7 cut(s) | 127, 193, 322, 415, 562, 589, 628 |
| StyI | CCWWGG | 3 cut(s) | 464, 652, 740 |
| TaaI | ACNGT | 6 cut(s) | 260, 272, 533, 912, 950, 993 |
| TaiI | ACGT | 2 cut(s) | 211, 235 |
| TaqI | TCGA | 5 cut(s) | 8, 328, 334, 355, 577 |
| TaqII | GACCGA | 1 cut(s) | 1095 |
| TasI | AATT | 3 cut(s) | 607, 639, 1083 |
| TatI | WGTACW | 2 cut(s) | 162, 1035 |
| TauI | GCSGC | 3 cut(s) | 99, 111, 114 |
| Tru1I | TTAA | 2 cut(s) | 995, 1099 |
| Tru9I | TTAA | 2 cut(s) | 995, 1099 |
| TscAI | CASTG | 2 cut(s) | 536, 915 |
| TseFI | GTSAC | 1 cut(s) | 140 |
| TseI | GCWGC | 3 cut(s) | 54, 114, 730 |
| Tsp45I | GTSAC | 1 cut(s) | 140 |
| TspDTI | ATGAA | 1 cut(s) | 762 |
| TspGWI | ACGGA | 3 cut(s) | 56, 128, 542 |
| TspRI | CASTG | 2 cut(s) | 536, 915 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 410 |
| VneI | GTGCAC | 1 cut(s) | 312 |
| VpaK11BI | GGWCC | 6 cut(s) | 136, 284, 413, 526, 560, 632 |
| XapI | RAATTY | 1 cut(s) | 607 |
| XbaI | TCTAGA | 1 cut(s) | 394 |
| XhoI | CTCGAG | 1 cut(s) | 7 |
| XmnI | GAANNNNTTC | 1 cut(s) | 985 |
| XspI | CTAG | 4 cut(s) | 395, 618, 699, 972 |