Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003032

Physical Location & Seq

Genomic Coordinates Reverse (-)

6995295 .. 6999164

Gene Structure 3870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1088900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTTCCAGTTGATCCTGAAACCAAGATGGTTAGTTGCAAAAGAGAATCTGGGTGGTGTAAATGCTGAAGTTTGTGAGGTCTATGTTGATGACTTCTCTACAAACAAGCAAGCTGTAGAAAGGCGATTACCAAATGCTGTCCTACCTCTCCTGCGCTTCTATCAGTATGAAAGCTCTGATTCTTCCTCCAGTTTTCAAGGCTCTCCTAGTGAGGACAGAAATTTTAGGAGCGATGTTGTTGATTTTACAGAAACGGACGAGGCATCTTTCTCTGGCCAAGATGATTCTGACCTCATTGATATTCTTGAATGGGCCAAGGTATCACTGTTAAAGTTTCATCCTTTGGACCACCTGCATCCCTTGGAATATCATAGACCAAAAGCAAATGTTTTACGTACTGCTGGCTCAACCATTGATCTGGGTTCATGCAGTACGAGTCTGGAATTCGCTGAGGCACAAAGTGCTTTCTTGGTAGAGGAGGAAGCAACTGCATTATCAGTATGGGCTATTGCATGCATATGTGGCTCCTTACGACTTGAAAATAGGCCTGCTTCATGGCTGACGTTGCATTTGATTCTCCTCCATACTTTGCAGGTATTAGCATTATTTGCAGGAGCACTGTTGGAGAAGCAGATTGTAATCATTTGTTCCAATTTGGGGATCTTATCGGCCTCAGTGTTATCAATTATCCCTCTGATCCGCCCCTACCAGTGGCAAAGCCTTCTAATGCCGGTTTTACCAAATGACATGCTGGACTTTTTAGACGCACCCGTCCCTTACATAGTTGGTGTGAAGAACAAAACAGATGAAGTACAGTCGAAACTTTCCAATACAATTGTAGTTGATGCCAACAAGAACCAGGTGAAGTCGCCGACAATACCTCATTTACCACAACATAAGGAATTATTTTCATCCTTAAGTCCTTATCACGCAAAGCTTGTGGGAGAGAGTTTTTTGGGTAGGAAAAGGCCGGTGTACGAGTGCACAGAAGAACAGGTTGAAGCTGCCAAGGGTTTCCTAGGAGTGTTAAGAACTTACTTGGATTCTCTTTGCTCTAATCTCCGTTCACATACAATTACTAACGTACAGTCCAATGATGATAAGGTATCGTTACTTCTGAAGGAGAGTTTCATCGACTCATTTCCTAGTCGCGATCGACCATTTATGAAGCTTTTTGTGGACACACAAATGTTTTCTGTACATACGGATCTCGTTCTCTCCTTCTTCCAGAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN uDENN

Protein Analysis

413

Amino Acids

46.25

Weight (kDa)

5.29

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DENN	PF02141	191 - 285	3.7e-22	DENN (AEX-3) domain
dDENN	PF03455	374 - 399	3.5e-06	dDENN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35560 AT5G35560
fragaria_vesca	FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450
malus_domestica	MD00G1142500.v1.1 MD02G1088900.v1.1 MD02G1089000.v1.1 MD15G1216100.v1.1
prunus_persica	Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1
pyrus_communis	pycom15g19170
rosa_chinensis	RchiOBHm_Chr2g0094551
rosa_laevigata	RLG00000016501
rosa_multiflora	Rmu_sc0004359.1_g000040
rosa_roxburghii	Rroxscaffold_2G00147070
rosa_rugosa	Rorug02G0044800 Rorug02G0044900 Rorug02G0045000 Rorug02G0045100 Rorug02G0045100 Rorug02G0045100
rosa_samantha	Rh2AG093000 Rh2BG093300 Rh2CG095700 Rh2DG092100
rosa_wichuraiana	Rw7G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	360
AasI	GACNNNNNNGTC	1 cut(s)	770
Acc36I	ACCTGC	2 cut(s)	360, 583
AccII	CGCG	1 cut(s)	1152
AciI	CCGC	1 cut(s)	700
AclWI	GGATC	4 cut(s)	7, 668, 691, 1215
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	220, 443
AcuI	CTGAAG	2 cut(s)	87, 1139
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	6 cut(s)	397, 433, 813, 977, 1086, 1200
AfiI	CCNNNNNNNGG	2 cut(s)	657, 711
AflII	CTTAAG	1 cut(s)	916
AgsI	TTSAA	4 cut(s)	197, 308, 539, 1001
AjnI	CCWGG	1 cut(s)	858
AluBI	AGCT	5 cut(s)	113, 174, 937, 1004, 1171
AluI	AGCT	5 cut(s)	113, 174, 937, 1004, 1171
Alw21I	GWGCWC	2 cut(s)	619, 986
Alw44I	GTGCAC	1 cut(s)	982
AlwI	GGATC	4 cut(s)	7, 668, 691, 1215
AoxI	GGCC	5 cut(s)	274, 312, 545, 669, 968
ApaLI	GTGCAC	1 cut(s)	982
ApeKI	GCWGC	1 cut(s)	1004
ApoI	RAATTY	2 cut(s)	220, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
AspA2I	CCTAGG	1 cut(s)	1018
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	312, 346
AsuHPI	GGTGA	1 cut(s)	874
AvaII	GGWCC	1 cut(s)	346
AvrII	CCTAGG	1 cut(s)	1018
BaeGI	GKGCMC	1 cut(s)	986
BalI	TGGCCA	1 cut(s)	276
BarI	GAAGNNNNNNTAC	2 cut(s)	1098, 1130
Bbv12I	GWGCWC	2 cut(s)	619, 986
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	991
BccI	CCATC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	860
BfaI	CTAG	3 cut(s)	207, 1019, 1146
BfmI	CTRYAG	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	916
BfuAI	ACCTGC	2 cut(s)	360, 583
BisI	GCNGC	1 cut(s)	1005
BlnI	CCTAGG	1 cut(s)	1018
BlsI	GCNGC	1 cut(s)	1006
Bme1390I	CCNGG	1 cut(s)	860
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	312, 346
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	1 cut(s)	860
BmsI	GCATC	3 cut(s)	272, 364, 835
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	638
BsaJI	CCNNGG	4 cut(s)	315, 360, 1008, 1018
Bsc4I	CCNNNNNNNGG	2 cut(s)	657, 711
Bse118I	RCCGGY	2 cut(s)	730, 970
Bse1I	ACTGG	3 cut(s)	7, 189, 709
Bse8I	GATNNNNATC	1 cut(s)	638
BseBI	CCWGG	1 cut(s)	860
BseDI	CCNNGG	4 cut(s)	315, 360, 1008, 1018
BseGI	GGATG	3 cut(s)	337, 355, 911
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	2 cut(s)	657, 711
BseMII	CTCAG	2 cut(s)	441, 687
BseNI	ACTGG	3 cut(s)	7, 189, 709
BseRI	GAGGAG	2 cut(s)	491, 569
BseSI	GKGCMC	1 cut(s)	986
BseXI	GCAGC	1 cut(s)	991
Bsh1236I	CGCG	1 cut(s)	1152
Bsh1285I	CGRYCG	1 cut(s)	1156
BshFI	GGCC	5 cut(s)	276, 314, 547, 671, 970
BsiEI	CGRYCG	1 cut(s)	1156
BsiHKAI	GWGCWC	2 cut(s)	619, 986
BsiSI	CCGG	2 cut(s)	731, 971
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	657, 711
BsmFI	GGGAC	1 cut(s)	758
BsnI	GGCC	5 cut(s)	276, 314, 547, 671, 970
Bsp1286I	GDGCHC	2 cut(s)	619, 986
Bsp1407I	TGTACA	1 cut(s)	1198
Bsp143I	GATC	6 cut(s)	12, 415, 660, 696, 1153, 1207
Bsp68I	TCGCGA	1 cut(s)	1152
BspACI	CCGC	1 cut(s)	700
BspANI	GGCC	5 cut(s)	276, 314, 547, 671, 970
BspCNI	CTCAG	2 cut(s)	442, 686
BspFNI	CGCG	1 cut(s)	1152
BspLI	GGNNCC	1 cut(s)	526
BspMI	ACCTGC	2 cut(s)	360, 583
BspPI	GGATC	4 cut(s)	7, 668, 691, 1215
BspTI	CTTAAG	1 cut(s)	916
BsrFI	RCCGGY	2 cut(s)	730, 970
BsrGI	TGTACA	1 cut(s)	1198
BsrI	ACTGG	3 cut(s)	7, 189, 709
BssAI	RCCGGY	2 cut(s)	730, 970
BssECI	CCNNGG	4 cut(s)	315, 360, 1008, 1018
BssMI	GATC	6 cut(s)	12, 415, 660, 696, 1153, 1207
BssT1I	CCWWGG	4 cut(s)	315, 360, 1008, 1018
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	4 cut(s)	327, 621, 816, 1089
BstAFI	CTTAAG	1 cut(s)	916
BstAPI	GCANNNNNTGC	2 cut(s)	461, 608
BstAUI	TGTACA	1 cut(s)	1198
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	4 cut(s)	111, 403, 514, 549
BstDEI	CTNAG	2 cut(s)	450, 673
BstF5I	GGATG	3 cut(s)	337, 355, 911
BstFNI	CGCG	1 cut(s)	1152
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	6 cut(s)	15, 418, 663, 699, 1156, 1210
BstMBI	GATC	6 cut(s)	12, 415, 660, 696, 1153, 1207
BstMCI	CGRYCG	1 cut(s)	1156
BstMWI	GCNNNNNNNGC	4 cut(s)	461, 522, 565, 608
BstNI	CCWGG	1 cut(s)	860
BstNSI	RCATGY	2 cut(s)	516, 751
BstSCI	CCNGG	1 cut(s)	858
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	986
BstSNI	TACGTA	1 cut(s)	395
BstUI	CGCG	1 cut(s)	1152
BstV1I	GCAGC	1 cut(s)	991
BstX2I	RGATCY	2 cut(s)	660, 1207
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	2 cut(s)	660, 1207
BsuRI	GGCC	5 cut(s)	276, 314, 547, 671, 970
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	337, 355, 911
BtsIMutI	CAGTG	4 cut(s)	323, 617, 681, 716
BtuMI	TCGCGA	1 cut(s)	1152
BveI	ACCTGC	2 cut(s)	360, 583
Cac8I	GCNNGC	4 cut(s)	111, 403, 514, 549
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	2 cut(s)	730, 970
Cfr13I	GGNCC	2 cut(s)	312, 346
CseI	GACGC	1 cut(s)	773
CsiI	ACCWGGT	1 cut(s)	858
Csp6I	GTAC	6 cut(s)	396, 432, 812, 976, 1085, 1199
CspCI	CAANNNNNGTGG	2 cut(s)	921, 956
CviAII	CATG	4 cut(s)	426, 513, 555, 748
CviQI	GTAC	6 cut(s)	396, 432, 812, 976, 1085, 1199
DdeI	CTNAG	2 cut(s)	450, 673
DpnI	GATC	6 cut(s)	14, 417, 662, 698, 1155, 1209
DpnII	GATC	6 cut(s)	12, 415, 660, 696, 1153, 1207
DraIII	CACNNNGTG	1 cut(s)	461
DrdI	GACNNNNNNGTC	1 cut(s)	770
DseDI	GACNNNNNNGTC	1 cut(s)	770
EaeI	YGGCCR	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	689
Eco105I	TACGTA	1 cut(s)	395
Eco130I	CCWWGG	4 cut(s)	315, 360, 1008, 1018
Eco147I	AGGCCT	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	2 cut(s)	87, 1139
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	858
EcoT14I	CCWWGG	4 cut(s)	315, 360, 1008, 1018
EcoT22I	ATGCAT	1 cut(s)	518
ErhI	CCWWGG	4 cut(s)	315, 360, 1008, 1018
FaeI	CATG	4 cut(s)	429, 516, 558, 751
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	4 cut(s)	425, 512, 554, 747
FauNDI	CATATG	1 cut(s)	518
Fnu4HI	GCNGC	1 cut(s)	1005
FokI	GGATG	3 cut(s)	324, 342, 898
Fsp4HI	GCNGC	1 cut(s)	1005
FspBI	CTAG	3 cut(s)	207, 1019, 1146
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	1005
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	5 cut(s)	276, 314, 547, 671, 970
HapII	CCGG	2 cut(s)	731, 971
HgaI	GACGC	1 cut(s)	773
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	429, 516, 558, 751
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	2 cut(s)	935, 1169
HinfI	GANTC	7 cut(s)	46, 179, 284, 436, 574, 1043, 1136
HpaII	CCGG	2 cut(s)	731, 971
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	4 cut(s)	976, 984, 1067, 1180
Hpy188I	TCNGA	4 cut(s)	178, 289, 696, 1119
Hpy188III	TCNNGA	5 cut(s)	16, 305, 440, 1151, 1228
Hpy8I	GTNNAC	4 cut(s)	976, 984, 1067, 1180
HpyAV	CCTTC	4 cut(s)	731, 1114, 1225, 1231
HpyCH4III	ACNGT	4 cut(s)	327, 621, 816, 1089
HpyCH4IV	ACGT	3 cut(s)	394, 563, 1083
HpyF10VI	GCNNNNNNNGC	4 cut(s)	461, 522, 565, 608
HpyF3I	CTNAG	2 cut(s)	450, 673
HpySE526I	ACGT	3 cut(s)	394, 563, 1083
Hsp92II	CATG	4 cut(s)	429, 516, 558, 751
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	6 cut(s)	12, 415, 660, 696, 1153, 1207
LmnI	GCTCC	3 cut(s)	228, 530, 614
Lsp1109I	GCAGC	1 cut(s)	991
LweI	GCATC	3 cut(s)	272, 364, 835
MabI	ACCWGGT	1 cut(s)	858
MaeI	CTAG	3 cut(s)	207, 1019, 1146
MaeII	ACGT	3 cut(s)	394, 563, 1083
MaeIII	GTNAC	1 cut(s)	1110
MalI	GATC	6 cut(s)	14, 417, 662, 698, 1155, 1209
MboI	GATC	6 cut(s)	12, 415, 660, 696, 1153, 1207
MboII	GAAGA	4 cut(s)	174, 805, 1001, 1216
MfeI	CAATTG	1 cut(s)	834
MflI	RGATCY	2 cut(s)	660, 1207
MhlI	GDGCHC	2 cut(s)	619, 986
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	7 cut(s)	220, 443, 652, 684, 834, 902, 1074
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	445, 1130
MmeI	TCCRAC	1 cut(s)	603
Mox20I	TGGCCA	1 cut(s)	276
Mph1103I	ATGCAT	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	3 cut(s)	329, 917, 1028
MslI	CAYNNNNRTG	2 cut(s)	517, 1187
Msp20I	TGGCCA	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	916
MspI	CCGG	2 cut(s)	731, 971
MspR9I	CCNGG	1 cut(s)	860
MunI	CAATTG	1 cut(s)	834
MvaI	CCWGG	1 cut(s)	860
MvnI	CGCG	1 cut(s)	1152
MwoI	GCNNNNNNNGC	4 cut(s)	461, 522, 565, 608
NdeI	CATATG	1 cut(s)	518
NdeII	GATC	6 cut(s)	12, 415, 660, 696, 1153, 1207
NlaIII	CATG	4 cut(s)	429, 516, 558, 751
NlaIV	GGNNCC	1 cut(s)	526
NruI	TCGCGA	1 cut(s)	1152
NsiI	ATGCAT	1 cut(s)	518
NspI	RCATGY	2 cut(s)	516, 751
PaeI	GCATGC	1 cut(s)	516
PaqCI	CACCTGC	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	547
PfeI	GAWTC	5 cut(s)	46, 179, 284, 574, 1043
PkrI	GCNGC	1 cut(s)	1006
Ple19I	CGATCG	1 cut(s)	1156
PleI	GAGTC	2 cut(s)	444, 1130
PpsI	GAGTC	2 cut(s)	444, 1130
Ppu21I	YACGTR	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	858
PspGI	CCWGG	1 cut(s)	858
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	2 cut(s)	312, 346
PsuI	RGATCY	2 cut(s)	660, 1207
PvuI	CGATCG	1 cut(s)	1156
RruI	TCGCGA	1 cut(s)	1152
RsaI	GTAC	6 cut(s)	397, 433, 813, 977, 1086, 1200
RsaNI	GTAC	6 cut(s)	396, 432, 812, 976, 1085, 1199
RseI	CAYNNNNRTG	2 cut(s)	517, 1187
SaqAI	TTAA	3 cut(s)	329, 917, 1028
SatI	GCNGC	1 cut(s)	1005
Sau3AI	GATC	6 cut(s)	12, 415, 660, 696, 1153, 1207
Sau96I	GGNCC	2 cut(s)	312, 346
SchI	GAGTC	2 cut(s)	445, 1130
ScrFI	CCNGG	1 cut(s)	860
SduI	GDGCHC	2 cut(s)	619, 986
SexAI	ACCWGGT	1 cut(s)	858
SfaNI	GCATC	3 cut(s)	272, 364, 835
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	2 cut(s)	517, 1187
SmlI	CTYRAG	1 cut(s)	916
SmoI	CTYRAG	1 cut(s)	916
SnaBI	TACGTA	1 cut(s)	395
SphI	GCATGC	1 cut(s)	516
Sse9I	AATT	7 cut(s)	220, 443, 652, 684, 834, 902, 1074
SseBI	AGGCCT	1 cut(s)	547
SsiI	CCGC	1 cut(s)	700
SspMI	CTAG	3 cut(s)	207, 1019, 1146
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	858
StyI	CCWWGG	4 cut(s)	315, 360, 1008, 1018
TaaI	ACNGT	4 cut(s)	327, 621, 816, 1089
TaiI	ACGT	3 cut(s)	397, 566, 1086
TaqI	TCGA	3 cut(s)	818, 1134, 1156
TasI	AATT	7 cut(s)	220, 443, 652, 684, 834, 902, 1074
TatI	WGTACW	2 cut(s)	811, 1198
TfiI	GAWTC	5 cut(s)	46, 179, 284, 574, 1043
Tru1I	TTAA	3 cut(s)	329, 917, 1028
Tru9I	TTAA	3 cut(s)	329, 917, 1028
TscAI	CASTG	4 cut(s)	330, 624, 681, 716
TseI	GCWGC	1 cut(s)	1004
TspDTI	ATGAA	8 cut(s)	183, 326, 414, 543, 822, 900, 1120, 1181
TspGWI	ACGGA	3 cut(s)	269, 1052, 1220
TspRI	CASTG	4 cut(s)	330, 624, 681, 716
Vha464I	CTTAAG	1 cut(s)	916
VneI	GTGCAC	1 cut(s)	982
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	220, 443
XceI	RCATGY	2 cut(s)	516, 751
XmaJI	CCTAGG	1 cut(s)	1018
XspI	CTAG	3 cut(s)	207, 1019, 1146
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.