Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003032

Physical Location & Seq

Genomic Coordinates Forward (+)

59865599 .. 59875791

Gene Structure 10193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTGTCTGACTGAGACTTTGGATGAGATGGTTCAGAACGGGACTCTCAGTCCTGAGCTTGCCATTCAGGAGCTTGGTAATTACAGACATGCTCTTACTGCTGCTGAGGAAGCAATTAGGCTCAGAAACACTAATGTCAAGAACGTGAATTGGGTGGTGTTGGGAGGTCCAGGGGTAAAGACTCCACTTCTTGTTCAGAGAAGATGGAACTGGGTCTTGCTTCACGTTCTTTTGATTCCTTTGACTTTAAATTTGGATTTCGTTTACAATAATCGTATGCTTATAGAAAATGTGTCTATAGGTGGTGCAATGAGAAGGGAGATATCATTTGTGAAATCAGTCATCAGTGAGGCATGGACAATCTCTGGTACCCCGTTGGATTTACGTGATCTTCGACTATTGGCAATTGAATCTGACTATGATGAGTATGCTGATACAAGTGCTAATGGAGCAACTTTTTACCGCTCTGTGAAGTCACCAACAATACCTCATTTGCCACAACATTGGGAATTATTTTCAGCATTAAGTCCTTATCATGCAAAGCTTGTGGAAGAGAGTTTTTTGGCTAGGAAAAGGCCAGTGTATGAGTGCACAGATGAACAGGTTGAAGCTGCCAAAGATTTTCTAGGAGTCTTAAGAACTTACTTGGATTCTCTTTGCTCTAATCTTCGTTCACACACAATTACAAATGTACAATCGAATGACAATAAGGTGTCACTACTTCTGAAAGAGAGTTTCATTGACTCATTTCCTAGTCGACCATTTATGAAGCTTTCCGTGGACACCCAACCCTTTACTGTACATACGGACCTTGTTCTCTCTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN uDENN

Protein Analysis

276

Amino Acids

31.33

Weight (kDa)

5.67

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35560 AT5G35560
fragaria_vesca	FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450
malus_domestica	MD00G1142500.v1.1 MD02G1088900.v1.1 MD02G1089000.v1.1 MD15G1216100.v1.1
prunus_persica	Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1
pyrus_communis	pycom15g19170
rosa_chinensis	RchiOBHm_Chr2g0094551
rosa_laevigata	RLG00000016501
rosa_multiflora	Rmu_sc0004359.1_g000040
rosa_roxburghii	Rroxscaffold_2G00147070
rosa_rugosa	Rorug02G0044800 Rorug02G0044900 Rorug02G0045000 Rorug02G0045100 Rorug02G0045100 Rorug02G0045100
rosa_samantha	Rh2AG093000 Rh2BG093300 Rh2CG095700 Rh2DG092100
rosa_wichuraiana	Rw7G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	757
AciI	CCGC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	250
AfaI	GTAC	3 cut(s)	370, 693, 801
AflII	CTTAAG	1 cut(s)	634
AgsI	TTSAA	2 cut(s)	410, 608
AhdI	GACNNNNNGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	5 cut(s)	58, 73, 544, 611, 772
AluI	AGCT	5 cut(s)	58, 73, 544, 611, 772
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	589
AoxI	GGCC	1 cut(s)	575
ApaLI	GTGCAC	1 cut(s)	589
ApeKI	GCWGC	2 cut(s)	101, 611
ApoI	RAATTY	1 cut(s)	250
ArsI	GACNNNNNNTTYG	3 cut(s)	33, 235, 267
Asp718I	GGTACC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	167, 808
AsuHPI	GGTGA	1 cut(s)	468
AvaII	GGWCC	2 cut(s)	167, 808
BaeGI	GKGCMC	1 cut(s)	593
BanI	GGYRCC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	593
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	88, 598
BccI	CCATC	2 cut(s)	22, 198
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	3 cut(s)	567, 626, 753
BfmI	CTRYAG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	634
BisI	GCNGC	2 cut(s)	102, 612
BlsI	GCNGC	2 cut(s)	103, 613
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	167, 808
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	167, 808
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
Bpu10I	CCTNAGC	2 cut(s)	54, 105
BsaAI	YACGTR	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	170, 777
Bse1I	ACTGG	2 cut(s)	215, 578
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	170, 777
BseGI	GGATG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	4 cut(s)	45, 61, 96, 136
BseNI	ACTGG	2 cut(s)	215, 578
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	2 cut(s)	88, 598
BshFI	GGCC	1 cut(s)	577
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp1407I	TGTACA	2 cut(s)	691, 799
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	1 cut(s)	463
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	5 cut(s)	4, 46, 60, 97, 135
BspLI	GGNNCC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	634
BsrBI	CCGCTC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	2 cut(s)	691, 799
BsrI	ACTGG	2 cut(s)	215, 578
BssECI	CCNNGG	2 cut(s)	170, 777
BssMI	GATC	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	799
Bst6I	CTCTTC	1 cut(s)	546
BstAFI	CTTAAG	1 cut(s)	634
BstAUI	TGTACA	2 cut(s)	691, 799
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	5 cut(s)	12, 47, 54, 105, 122
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 110, 449
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	88, 598
BstXI	CCANNNNNNTGG	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	577
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	352, 585
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	167, 808
Csp6I	GTAC	3 cut(s)	369, 692, 800
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	3 cut(s)	89, 354, 536
CviJI	RGCY	8 cut(s)	58, 73, 121, 544, 566, 577, 611, 772
CviKI_1	RGCY	8 cut(s)	58, 73, 121, 544, 566, 577, 611, 772
CviQI	GTAC	3 cut(s)	369, 692, 800
DdeI	CTNAG	5 cut(s)	12, 47, 54, 105, 122
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
DraI	TTTAAA	1 cut(s)	249
DriI	GACNNNNNGTC	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	546
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	546
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	167, 808
EcoRII	CCWGG	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	324
FaeI	CATG	3 cut(s)	92, 357, 539
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	3 cut(s)	88, 353, 535
FblI	GTMKAC	1 cut(s)	757
Fnu4HI	GCNGC	2 cut(s)	102, 612
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	102, 612
FspBI	CTAG	3 cut(s)	567, 626, 753
GluI	GCNGC	2 cut(s)	102, 612
HaeIII	GGCC	1 cut(s)	577
Hin1II	CATG	3 cut(s)	92, 357, 539
HincII	GTYRAC	1 cut(s)	758
HindII	GTYRAC	1 cut(s)	758
HindIII	AAGCTT	2 cut(s)	542, 770
HinfI	GANTC	7 cut(s)	43, 181, 235, 410, 630, 650, 743
HphI	GGTGA	1 cut(s)	468
Hpy166II	GTNNAC	5 cut(s)	265, 591, 674, 758, 781
Hpy188I	TCNGA	6 cut(s)	9, 36, 125, 198, 415, 726
Hpy188III	TCNNGA	3 cut(s)	53, 68, 139
Hpy8I	GTNNAC	5 cut(s)	265, 591, 674, 758, 781
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	799
HpyCH4IV	ACGT	3 cut(s)	144, 225, 385
HpyCH4V	TGCA	3 cut(s)	308, 539, 591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 110, 449
HpyF3I	CTNAG	5 cut(s)	12, 47, 54, 105, 122
HpySE526I	ACGT	3 cut(s)	144, 225, 385
Hsp92II	CATG	3 cut(s)	92, 357, 539
KpnI	GGTACC	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	70, 449
LpnPI	CCDG	8 cut(s)	53, 66, 156, 183, 196, 351, 587, 591
Lsp1109I	GCAGC	2 cut(s)	88, 598
MaeI	CTAG	3 cut(s)	567, 626, 753
MaeII	ACGT	3 cut(s)	144, 225, 385
MaeIII	GTNAC	2 cut(s)	474, 714
MalI	GATC	1 cut(s)	390
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	1 cut(s)	388
MboII	GAAGA	4 cut(s)	213, 383, 563, 659
MfeI	CAATTG	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	7 cut(s)	79, 114, 148, 250, 405, 509, 681
MlyI	GAGTC	4 cut(s)	37, 175, 639, 737
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	4 cut(s)	100, 158, 343, 498
MseI	TTAA	3 cut(s)	248, 524, 635
MspCI	CTTAAG	1 cut(s)	634
MspR9I	CCNGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	98, 110, 449
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	3 cut(s)	92, 357, 539
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	474, 714
NspI	RCATGY	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PfeI	GAWTC	3 cut(s)	235, 410, 650
PkrI	GCNGC	2 cut(s)	103, 613
PleI	GAGTC	4 cut(s)	37, 175, 638, 737
PpsI	GAGTC	4 cut(s)	37, 175, 638, 737
Ppu21I	YACGTR	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	167, 808
RsaI	GTAC	3 cut(s)	370, 693, 801
RsaNI	GTAC	3 cut(s)	369, 692, 800
SalI	GTCGAC	1 cut(s)	756
SaqAI	TTAA	3 cut(s)	248, 524, 635
SatI	GCNGC	2 cut(s)	102, 612
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	2 cut(s)	167, 808
SchI	GAGTC	4 cut(s)	37, 175, 639, 737
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	297
SinI	GGWCC	2 cut(s)	167, 808
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	7 cut(s)	79, 114, 148, 250, 405, 509, 681
SsiI	CCGC	1 cut(s)	463
SspMI	CTAG	3 cut(s)	567, 626, 753
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	799
TaiI	ACGT	3 cut(s)	147, 228, 388
TaqI	TCGA	3 cut(s)	394, 698, 757
TasI	AATT	7 cut(s)	79, 114, 148, 250, 405, 509, 681
TatI	WGTACW	2 cut(s)	691, 799
TfiI	GAWTC	3 cut(s)	235, 410, 650
Tru1I	TTAA	3 cut(s)	248, 524, 635
Tru9I	TTAA	3 cut(s)	248, 524, 635
TscAI	CASTG	2 cut(s)	352, 585
TseFI	GTSAC	2 cut(s)	474, 714
TseI	GCWGC	2 cut(s)	101, 611
Tsp45I	GTSAC	2 cut(s)	474, 714
TspDTI	ATGAA	3 cut(s)	612, 727, 782
TspGWI	ACGGA	2 cut(s)	766, 821
TspRI	CASTG	2 cut(s)	352, 585
Vha464I	CTTAAG	1 cut(s)	634
VneI	GTGCAC	1 cut(s)	589
VpaK11BI	GGWCC	2 cut(s)	167, 808
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	757
XspI	CTAG	3 cut(s)	567, 626, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.