Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003032

Physical Location & Seq

Genomic Coordinates Reverse (-)

3550425 .. 3551583

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0045000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCGATACTTGGAGCCTCCGCATGCATATCATTCTGAGAAAGGGTTTGGTGGCGGGAAGCCGAGAATTGAGTACCCTGTGCTGGCGGACGACATGTCCCAATACTCTGTTCTTCGCCTTGCAAGGTTTCTGAATATAACCGCTGGATTAGTCCTTATCTTTGCTGATGCGGAAGCTTTGAGGGAAGACAAAGCTTTGAAGATTGAAGTTGCTGAGCTGAAGTCCCAGTTTTGCGAGCGAGCACAAGCTCTAATACATGGAGATCTTCACACAAGCTCTGCAATGGTAACTCCACTGTGGGATGAACACAAAGATGGAAATGGTGAGGCTTACATTGCTGCGATTTACAACAACTCTGAGGTTCGTACACTGCAGGATTTGTATCGTGACACCCTTGGGTTTGGCGCTGTGAAAATGATGAGGAGATTTGTTGGGGTTGCTGGTTGCACATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN uDENN

Protein Analysis

151

Amino Acids

16.85

Weight (kDa)

5.94

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35560 AT5G35560
fragaria_vesca	FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450
malus_domestica	MD00G1142500.v1.1 MD02G1088900.v1.1 MD02G1089000.v1.1 MD15G1216100.v1.1
prunus_persica	Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1
pyrus_communis	pycom15g19170
rosa_chinensis	RchiOBHm_Chr2g0094551
rosa_laevigata	RLG00000016501
rosa_multiflora	Rmu_sc0004359.1_g000040
rosa_roxburghii	Rroxscaffold_2G00147070
rosa_rugosa	Rorug02G0044800 Rorug02G0044900 Rorug02G0045000 Rorug02G0045100 Rorug02G0045100 Rorug02G0045100
rosa_samantha	Rh2AG093000 Rh2BG093300 Rh2CG095700 Rh2DG092100
rosa_wichuraiana	Rw7G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	20, 54, 86, 141, 170
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	2 cut(s)	74, 367
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	2 cut(s)	93, 449
AgsI	TTSAA	2 cut(s)	199, 206
AhdI	GACNNNNNGTC	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	5 cut(s)	176, 194, 217, 248, 276
AluI	AGCT	5 cut(s)	176, 194, 217, 248, 276
Alw21I	GWGCWC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	408
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	1 cut(s)	339
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	340
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	2 cut(s)	288, 333
Bse8I	GATNNNNATC	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	2 cut(s)	288, 333
BseMII	CTCAG	3 cut(s)	27, 204, 348
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	2 cut(s)	82, 208
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	82, 208
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	262
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	5 cut(s)	20, 54, 86, 141, 170
BspCNI	CTCAG	3 cut(s)	28, 205, 349
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	288, 333
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	297
BstC8I	GCNNGC	4 cut(s)	24, 84, 236, 240
BstDEI	CTNAG	3 cut(s)	36, 213, 357
BstF5I	GGATG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNSI	RCATGY	3 cut(s)	26, 97, 453
BstSFI	CTRYAG	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	293, 368
Cac8I	GCNNGC	4 cut(s)	24, 84, 236, 240
CfoI	GCGC	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	73, 366
CviAII	CATG	4 cut(s)	23, 94, 257, 450
CviJI	RGCY	8 cut(s)	16, 61, 176, 194, 217, 248, 276, 329
CviKI_1	RGCY	8 cut(s)	16, 61, 176, 194, 217, 248, 276, 329
CviQI	GTAC	2 cut(s)	73, 366
DdeI	CTNAG	3 cut(s)	36, 213, 357
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	4 cut(s)	26, 97, 260, 453
FaiI	YATR	6 cut(s)	24, 28, 95, 137, 258, 451
FaqI	GGGAC	2 cut(s)	82, 208
FatI	CATG	4 cut(s)	22, 93, 256, 449
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	339
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	408
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	4 cut(s)	26, 97, 260, 453
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HindIII	AAGCTT	2 cut(s)	174, 192
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	3 cut(s)	37, 132, 358
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	26, 122, 281, 373, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	36, 213, 357
Hsp92II	CATG	4 cut(s)	26, 97, 260, 453
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	262
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	68, 90, 129, 239, 359, 426
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	286, 386
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MboII	GAAGA	4 cut(s)	104, 197, 211, 257
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	1 cut(s)	66
MnlI	CCTC	5 cut(s)	27, 174, 319, 352, 414
Mph1103I	ATGCAT	1 cut(s)	28
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	1 cut(s)	262
NlaIII	CATG	4 cut(s)	26, 97, 260, 453
NlaIV	GGNNCC	1 cut(s)	15
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	386
NsiI	ATGCAT	1 cut(s)	28
NspI	RCATGY	3 cut(s)	26, 97, 453
PaeI	GCATGC	1 cut(s)	26
PciI	ACATGT	2 cut(s)	93, 449
PkrI	GCNGC	1 cut(s)	340
PscI	ACATGT	2 cut(s)	93, 449
PspN4I	GGNNCC	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	375
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	2 cut(s)	74, 367
RsaNI	GTAC	2 cut(s)	73, 366
RseI	CAYNNNNRTG	1 cut(s)	312
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	7 cut(s)	128, 178, 196, 219, 250, 278, 363
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	312
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	5 cut(s)	20, 54, 86, 141, 170
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	297
TasI	AATT	1 cut(s)	66
TscAI	CASTG	2 cut(s)	300, 375
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	300, 375
XceI	RCATGY	3 cut(s)	26, 97, 453
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.