Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003032

Physical Location & Seq

Genomic Coordinates Reverse (-)

7481456 .. 7490235

Gene Structure 8780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46955

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGATAAAAGTGAAGGGTCGGGTGGCCCTGGTTGGGGCACTTCGCTTTTCATGCAAACAACGGAAGATGTTGCAAGAGCAGTTGCTGCTGCCGCGGCTGCTGCTACTGCCACACGGCCGTCAGTTGTATATTCCTCGAAAGAAGAAGATGGTGGTAGTCCACTTCAAAGACTACAACGCCAATTTAATAAAGTGCTAAAAGGCTTCTCAAGTCCTCCTGAAGTGAAAACAGGAAGAACTTACAATCCAGAAGTTTTGACTAGCCAGAAGCGCCAATGGGCAAACTTTCAGTTGCAGCACTTGGATCATAGGTCTTTAAAGGAGCCAACAAGGCTTTTCGAGAGCATGCTAGTTGTGGGGCTTCACCCTAACTGTGATATCCAGGCACTCCAAAGGCAATATTTTGCAAGAAAGTCTGAAGGTGCAGGAAAATTGCGAAGTGCACTTGGTAACCAGAATCAATCTCGAGTAGAACCCAATATTGAACCTCAGGTGTTATTGGTTTACCCTCCGGAAAAACAGCTGCCTCTTCAATACAAGGATCTCATTTCATTTTGCTTCCCAGGAGGCCTAGAGGTTCATGCTGTTGAGAGAACTCCTTCCATGAGTGAGTTGAATGAACTTCTTCTGGGGCAGGAGCATTTTAAACAAAGCGATTTGTCCTTTGTATTCCGGTTACAGGTTGCTGATGACTCAACTCTGTATGGATGCTGCGTGTTAGTGGAAGAATTGGTGCAAAAACCCTCTGGATTGCTTTCCATGATTTCTGAAAAACATCCTTCTCGCTCGTCTCTGAGTCGTCATATATTAACCACTCGGAGATGTTATTGCATTCTTTCGAGGATTCCTGCCTTTGAGTTACATTTTGGTGTATTGAATAGCATCTTCACAGAAGAAAGGTTGGAACGATTAACAAAAGGTATTGGTCTTTTGGATTTAGAATCCCCAAAGGATAATAGAAATGATGAAAATTTAGAGGAAAATACAGAAGAAATTCCAGACACTGGATCACTAAATAGTAGAACAGCAGACATGGTAAATGGCACAGCAGAATTTTGTCAGACAAGCCTAAAAGATGATTCACCTGAGAGAGTTGTCGTTGTTCCAATTCATCCTGAAACCGAGATGGTCAGTTCCAAGATAAAATCTTGTGTGGCAAATACAGAAGTTTGTGAGGTCTATGCTGATGATTTCTCTACAAACAAGCCTGCTTTTGAAAGGCGATTACCCAATGCTGTTCTACCTCTCTTGCGTTACTATCAGTATGAAAGTTCTGATTCTTCCTCCAGTCTTCAGGGTTCTCCTAGTGAAGACAGGAATTTTAGGAGTGATGTCGATGATATAGAGACGGAAGAGGCATCTTTCTCCGGCCAAGACGATTCTGATCTCATTGATATTCTTGAATGGGCAAAGGCAAACGATCATGGATCACTGCAGATAATAAGTGAGTACTACCAGTTACATTGTCCTGCCAGAGGCTCCACAATTAGATTCCATCCTTTGGAGCACCTGCATCCCTTGGAATATTATAGACCAGATGAAACAGTTTTACATATTGGTGGCTCAACCATTGATTTGAGGTCCTGTAGTACAAGTCTGGAATTTGCTGAGGCGCACAGCGCACTCCTGGCAGAGGAGGAAGCAACTGCATTATCAGTATGGGCTATTGCATGCATATGTGGCTCCTTACGTCTTGAAAATGTATTAGCAATGTTTGCAGGAGCACTGTTGGAGAAGCAAATTGTAATTATTTGTTCCAATTTGGGTATCTTATCTGCTTCAGTGTTGTCCATTATCCCTCTAATTCGTCCCTACCAGTGGCAAAGCCTACTAATGCCAGTTTTACCAAGTGACATGATGGACTTTTTGGATGCACCTGTTCCATACATAGTTGGGGTGAAGAACAAAACACATGAAGTACAGTCCAAACTATCCAATGTCATTCTGGTTGATGCCAACAAGAACCAGGTGAAGTCACCAACAATACCTCATTTGCCACAACATCGGGAATTATTTTCAGCATTAAGTCCTTATCATGCAAAGCTTGTGGGAGAGAGTTTTTTGGCTAGGAAAAGGCCAGTGTATGAGTGCACAGATGAACAGGTTGAAGCTGCCAAAGGTTTTCTAGGAGTCTTAAGAACTTACTTGGATTCTCTTTGTTCTAATCTCCGTTCACACACAATTACAAATGTACAATCGAATGACGATAAGGTGTCGCTACTTCTGAAAGAGAGTTTCATAGACTCATTTCCTAGTCGCGATCGGCCATTTATGAAGCTTTTCGTGGACACCCAACTCTTTTCTGTACATACAGACCTTGTTCTCTCTTTCTTCCAGAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN uDENN

Protein Analysis

781

Amino Acids

87.36

Weight (kDa)

5.31

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
uDENN	PF03456	163 - 240	3.8e-07	uDENN domain
DENN	PF02141	552 - 654	1.9e-23	DENN (AEX-3) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35560 AT5G35560
fragaria_vesca	FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450
malus_domestica	MD00G1142500.v1.1 MD02G1088900.v1.1 MD02G1089000.v1.1 MD15G1216100.v1.1
prunus_persica	Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1
pyrus_communis	pycom15g19170
rosa_chinensis	RchiOBHm_Chr2g0094551
rosa_laevigata	RLG00000016501
rosa_multiflora	Rmu_sc0004359.1_g000040
rosa_roxburghii	Rroxscaffold_2G00147070
rosa_rugosa	Rorug02G0044800 Rorug02G0044900 Rorug02G0045000 Rorug02G0045100 Rorug02G0045100 Rorug02G0045100
rosa_samantha	Rh2AG093000 Rh2BG093300 Rh2CG095700 Rh2DG092100
rosa_wichuraiana	Rw7G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1518
Acc36I	ACCTGC	1 cut(s)	1518
AccB7I	CCANNNNNTGG	2 cut(s)	1004, 1501
AccII	CGCG	2 cut(s)	95, 2259
AccIII	TCCGGA	1 cut(s)	511
AciI	CCGC	2 cut(s)	93, 95
AclWI	GGATC	4 cut(s)	312, 549, 1015, 1435
AcoI	YGGCCR	3 cut(s)	116, 1369, 2264
AcsI	RAATTY	5 cut(s)	970, 993, 1052, 1318, 1601
AcuI	CTGAAG	4 cut(s)	240, 438, 1277, 1764
AfaI	GTAC	5 cut(s)	1451, 1591, 1920, 2193, 2307
AfiI	CCNNNNNNNGG	8 cut(s)	34, 35, 679, 1004, 1475, 1501, 1633, 1818
AflII	CTTAAG	1 cut(s)	2134
AgsI	TTSAA	9 cut(s)	167, 485, 533, 616, 877, 1217, 1403, 1697, 2108
AjnI	CCWGG	5 cut(s)	28, 381, 562, 1626, 1965
AloI	GAACNNNNNNTCC	2 cut(s)	229, 261
AluBI	AGCT	4 cut(s)	523, 2044, 2111, 2278
AluI	AGCT	4 cut(s)	523, 2044, 2111, 2278
Alw21I	GWGCWC	4 cut(s)	445, 1509, 1726, 2093
Alw26I	GTCTC	2 cut(s)	795, 1340
Alw44I	GTGCAC	2 cut(s)	441, 2089
AlwI	GGATC	4 cut(s)	312, 549, 1015, 1435
AlwNI	CAGNNNCTG	2 cut(s)	86, 1004
Ama87I	CYCGRG	1 cut(s)	465
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	6 cut(s)	25, 116, 568, 1369, 2075, 2264
ApaLI	GTGCAC	2 cut(s)	441, 2089
ApeKI	GCWGC	8 cut(s)	86, 89, 98, 101, 295, 523, 711, 2111
ApoI	RAATTY	5 cut(s)	970, 993, 1052, 1318, 1601
Asp700I	GAANNNNTTC	4 cut(s)	598, 624, 993, 2279
AspLEI	GCGC	3 cut(s)	273, 1615, 1622
AspS9I	GGNCC	2 cut(s)	26, 1581
AsuHPI	GGTGA	5 cut(s)	356, 1074, 1909, 1968, 1981
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	1581
AxyI	CCTNAGG	1 cut(s)	489
BaeGI	GKGCMC	3 cut(s)	41, 445, 2093
BbsI	GAAGAC	2 cut(s)	1283, 1317
Bbv12I	GWGCWC	4 cut(s)	445, 1509, 1726, 2093
BbvCI	CCTCAGC	1 cut(s)	1608
BbvI	GCAGC	8 cut(s)	73, 76, 85, 88, 307, 510, 698, 2098
BccI	CCATC	4 cut(s)	143, 1120, 1503, 1852
BceAI	ACGGC	2 cut(s)	103, 131
BciT130I	CCWGG	5 cut(s)	30, 383, 564, 1628, 1967
BcoDI	GTCTC	2 cut(s)	795, 1340
BfaI	CTAG	7 cut(s)	261, 350, 572, 1305, 2067, 2126, 2253
BfmI	CTRYAG	2 cut(s)	1433, 1585
BfoI	RGCGCY	1 cut(s)	274
BfrI	CTTAAG	1 cut(s)	2134
BfuAI	ACCTGC	1 cut(s)	1518
BglI	GCCNNNNNGGC	1 cut(s)	331
BmcAI	AGTACT	1 cut(s)	1451
Bme1390I	CCNGG	5 cut(s)	30, 383, 564, 1628, 1967
Bme18I	GGWCC	1 cut(s)	1581
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	26, 1581
BmiI	GGNNCC	3 cut(s)	324, 1480, 1684
BmrFI	CCNGG	5 cut(s)	30, 383, 564, 1628, 1967
BmsI	GCATC	6 cut(s)	698, 891, 1367, 1522, 1861, 1942
BpiI	GAAGAC	2 cut(s)	1283, 1317
BpmI	CTGGAG	1 cut(s)	1270
Bpu10I	CCTNAGC	1 cut(s)	1608
BpuEI	CTTGAG	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	1383
BsaJI	CCNNGG	4 cut(s)	28, 93, 562, 1518
BsaWI	WCCGGW	2 cut(s)	511, 672
Bsc4I	CCNNNNNNNGG	8 cut(s)	34, 35, 679, 1004, 1475, 1501, 1633, 1818
Bse1I	ACTGG	6 cut(s)	1009, 1287, 1456, 1816, 1838, 2078
Bse21I	CCTNAGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	1716
Bse8I	GATNNNNATC	1 cut(s)	1383
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	5 cut(s)	30, 383, 564, 1628, 1967
BseDI	CCNNGG	4 cut(s)	28, 93, 562, 1518
BseGI	GGATG	6 cut(s)	713, 775, 1111, 1495, 1513, 1876
BseJI	GATNNNNATC	1 cut(s)	1383
BseLI	CCNNNNNNNGG	8 cut(s)	34, 35, 679, 1004, 1475, 1501, 1633, 1818
BseMI	GCAATG	1 cut(s)	1716
BseMII	CTCAG	4 cut(s)	503, 785, 1077, 1599
BseNI	ACTGG	6 cut(s)	1009, 1287, 1456, 1816, 1838, 2078
BseRI	GAGGAG	1 cut(s)	1649
BseSI	GKGCMC	3 cut(s)	41, 445, 2093
BseX3I	CGGCCG	1 cut(s)	116
BseXI	GCAGC	8 cut(s)	73, 76, 85, 88, 307, 510, 698, 2098
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	2 cut(s)	95, 2259
Bsh1285I	CGRYCG	2 cut(s)	119, 2263
BshFI	GGCC	6 cut(s)	27, 118, 570, 1371, 2077, 2266
BsiEI	CGRYCG	2 cut(s)	119, 2263
BsiHKAI	GWGCWC	4 cut(s)	445, 1509, 1726, 2093
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	3 cut(s)	512, 673, 1368
BslFI	GGGAC	1 cut(s)	1794
BslI	CCNNNNNNNGG	8 cut(s)	34, 35, 679, 1004, 1475, 1501, 1633, 1818
BsmAI	GTCTC	2 cut(s)	795, 1340
BsmBI	CGTCTC	2 cut(s)	795, 1340
BsmFI	GGGAC	1 cut(s)	1794
BsmI	GAATGC	1 cut(s)	831
BsnI	GGCC	6 cut(s)	27, 118, 570, 1371, 2077, 2266
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	5 cut(s)	41, 445, 1509, 1726, 2093
Bsp13I	TCCGGA	1 cut(s)	511
Bsp1407I	TGTACA	2 cut(s)	2191, 2305
Bsp143I	GATC	7 cut(s)	304, 541, 1007, 1384, 1420, 1427, 2260
Bsp68I	TCGCGA	1 cut(s)	2259
BspACI	CCGC	2 cut(s)	93, 95
BspANI	GGCC	6 cut(s)	27, 118, 570, 1371, 2077, 2266
BspCNI	CTCAG	4 cut(s)	502, 786, 1078, 1600
BspEI	TCCGGA	1 cut(s)	511
BspFNI	CGCG	2 cut(s)	95, 2259
BspLI	GGNNCC	3 cut(s)	324, 1480, 1684
BspMAI	CTGCAG	1 cut(s)	1437
BspMI	ACCTGC	1 cut(s)	1518
BspPI	GGATC	4 cut(s)	312, 549, 1015, 1435
BspTI	CTTAAG	1 cut(s)	2134
BsrDI	GCAATG	1 cut(s)	1716
BsrGI	TGTACA	2 cut(s)	2191, 2305
BsrI	ACTGG	6 cut(s)	1009, 1287, 1456, 1816, 1838, 2078
BssECI	CCNNGG	4 cut(s)	28, 93, 562, 1518
BssMI	GATC	7 cut(s)	304, 541, 1007, 1384, 1420, 1427, 2260
BssT1I	CCWWGG	1 cut(s)	1518
Bst2UI	CCWGG	5 cut(s)	30, 383, 564, 1628, 1967
Bst4CI	ACNGT	4 cut(s)	374, 1546, 1728, 1923
Bst6I	CTCTTC	2 cut(s)	534, 1347
BstAFI	CTTAAG	1 cut(s)	2134
BstAPI	GCANNNNNTGC	2 cut(s)	86, 1715
BstAUI	TGTACA	2 cut(s)	2191, 2305
BstC8I	GCNNGC	3 cut(s)	347, 1209, 1672
BstDEI	CTNAG	4 cut(s)	489, 794, 1086, 1608
BstDSI	CCRYGG	1 cut(s)	93
BstEII	GGTNACC	1 cut(s)	449
BstENI	CCTNNNNNAGG	2 cut(s)	1473, 1631
BstF5I	GGATG	6 cut(s)	713, 775, 1111, 1495, 1513, 1876
BstFNI	CGCG	2 cut(s)	95, 2259
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	3 cut(s)	273, 1615, 1622
BstKTI	GATC	7 cut(s)	307, 544, 1010, 1387, 1423, 1430, 2263
BstMAI	GTCTC	2 cut(s)	795, 1340
BstMBI	GATC	7 cut(s)	304, 541, 1007, 1384, 1420, 1427, 2260
BstMCI	CGRYCG	2 cut(s)	119, 2263
BstNI	CCWGG	5 cut(s)	30, 383, 564, 1628, 1967
BstNSI	RCATGY	2 cut(s)	349, 1674
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	5 cut(s)	28, 381, 562, 1626, 1965
BstSFI	CTRYAG	2 cut(s)	1433, 1585
BstSLI	GKGCMC	3 cut(s)	41, 445, 2093
BstUI	CGCG	2 cut(s)	95, 2259
BstV1I	GCAGC	8 cut(s)	73, 76, 85, 88, 307, 510, 698, 2098
BstV2I	GAAGAC	2 cut(s)	1283, 1317
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BstZI	CGGCCG	1 cut(s)	116
Bsu36I	CCTNAGG	1 cut(s)	489
BsuRI	GGCC	6 cut(s)	27, 118, 570, 1371, 2077, 2266
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	6 cut(s)	713, 775, 1111, 1495, 1513, 1876
BtsI	GCAGTG	1 cut(s)	1430
BtsIMutI	CAGTG	6 cut(s)	1002, 1430, 1724, 1788, 1823, 2085
BtuMI	TCGCGA	1 cut(s)	2259
BveI	ACCTGC	1 cut(s)	1518
Cac8I	GCNNGC	3 cut(s)	347, 1209, 1672
CaiI	CAGNNNCTG	2 cut(s)	86, 1004
CfoI	GCGC	3 cut(s)	273, 1615, 1622
Cfr13I	GGNCC	2 cut(s)	26, 1581
Cfr42I	CCGCGG	1 cut(s)	96
CsiI	ACCWGGT	1 cut(s)	1965
Csp6I	GTAC	5 cut(s)	1450, 1590, 1919, 2192, 2306
CspCI	CAANNNNNGTGG	2 cut(s)	2028, 2063
CviQI	GTAC	5 cut(s)	1450, 1590, 1919, 2192, 2306
DdeI	CTNAG	4 cut(s)	489, 794, 1086, 1608
DpnI	GATC	7 cut(s)	306, 543, 1009, 1386, 1422, 1429, 2262
DpnII	GATC	7 cut(s)	304, 541, 1007, 1384, 1420, 1427, 2260
DraI	TTTAAA	2 cut(s)	318, 646
EaeI	YGGCCR	3 cut(s)	116, 1369, 2264
EagI	CGGCCG	1 cut(s)	116
Eam1104I	CTCTTC	2 cut(s)	534, 1347
EarI	CTCTTC	2 cut(s)	534, 1347
EclXI	CGGCCG	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	1518
Eco147I	AGGCCT	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	1581
Eco52I	CGGCCG	1 cut(s)	116
Eco57I	CTGAAG	4 cut(s)	240, 438, 1277, 1764
Eco81I	CCTNAGG	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	449
EcoNI	CCTNNNNNAGG	2 cut(s)	1473, 1631
EcoO109I	RGGNCCY	1 cut(s)	1581
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	5 cut(s)	28, 381, 562, 1626, 1965
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	1518
EcoT22I	ATGCAT	1 cut(s)	1676
ErhI	CCWWGG	1 cut(s)	1518
Esp3I	CGTCTC	2 cut(s)	795, 1340
FaqI	GGGAC	1 cut(s)	1794
FauNDI	CATATG	1 cut(s)	1676
FokI	GGATG	6 cut(s)	720, 762, 1098, 1482, 1500, 1883
FspBI	CTAG	7 cut(s)	261, 350, 572, 1305, 2067, 2126, 2253
GlaI	GCGC	3 cut(s)	272, 1614, 1621
GsuI	CTGGAG	1 cut(s)	1270
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	6 cut(s)	27, 118, 570, 1371, 2077, 2266
HapII	CCGG	3 cut(s)	512, 673, 1368
HhaI	GCGC	3 cut(s)	273, 1615, 1622
Hin6I	GCGC	3 cut(s)	271, 1613, 1620
HinP1I	GCGC	3 cut(s)	271, 1613, 1620
HindIII	AAGCTT	2 cut(s)	2042, 2276
HpaII	CCGG	3 cut(s)	512, 673, 1368
HphI	GGTGA	5 cut(s)	356, 1074, 1909, 1968, 1981
Hpy166II	GTNNAC	6 cut(s)	161, 443, 505, 2091, 2174, 2287
Hpy188I	TCNGA	8 cut(s)	418, 769, 795, 819, 1062, 1276, 1384, 2226
Hpy8I	GTNNAC	6 cut(s)	161, 443, 505, 2091, 2174, 2287
HpyAV	CCTTC	5 cut(s)	8, 413, 609, 789, 2332
HpyCH4III	ACNGT	4 cut(s)	374, 1546, 1728, 1923
HpyCH4IV	ACGT	1 cut(s)	1690
HpyF3I	CTNAG	4 cut(s)	489, 794, 1086, 1608
HpySE526I	ACGT	1 cut(s)	1690
HspAI	GCGC	3 cut(s)	271, 1613, 1620
Kpn2I	TCCGGA	1 cut(s)	511
KspI	CCGCGG	1 cut(s)	96
Kzo9I	GATC	7 cut(s)	304, 541, 1007, 1384, 1420, 1427, 2260
LmnI	GCTCC	6 cut(s)	322, 637, 1484, 1504, 1688, 1721
Lsp1109I	GCAGC	8 cut(s)	73, 76, 85, 88, 307, 510, 698, 2098
LweI	GCATC	6 cut(s)	698, 891, 1367, 1522, 1861, 1942
MabI	ACCWGGT	1 cut(s)	1965
MaeI	CTAG	7 cut(s)	261, 350, 572, 1305, 2067, 2126, 2253
MaeII	ACGT	1 cut(s)	1690
MaeIII	GTNAC	7 cut(s)	449, 675, 858, 1253, 1458, 1850, 1974
MalI	GATC	7 cut(s)	306, 543, 1009, 1386, 1422, 1429, 2262
MboI	GATC	7 cut(s)	304, 541, 1007, 1384, 1420, 1427, 2260
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	5 cut(s)	41, 445, 1509, 1726, 2093
MlyI	GAGTC	4 cut(s)	686, 805, 2139, 2237
MmeI	TCCRAC	2 cut(s)	882, 1710
Mph1103I	ATGCAT	1 cut(s)	1676
MroI	TCCGGA	1 cut(s)	511
MroXI	GAANNNNTTC	4 cut(s)	598, 624, 993, 2279
MseI	TTAA	7 cut(s)	186, 317, 645, 809, 911, 2024, 2135
MslI	CAYNNNNRTG	3 cut(s)	867, 1557, 1675
MspA1I	CMGCKG	2 cut(s)	95, 523
MspCI	CTTAAG	1 cut(s)	2134
MspI	CCGG	3 cut(s)	512, 673, 1368
MspR9I	CCNGG	5 cut(s)	30, 383, 564, 1628, 1967
Mva1269I	GAATGC	1 cut(s)	831
MvaI	CCWGG	5 cut(s)	30, 383, 564, 1628, 1967
MvnI	CGCG	2 cut(s)	95, 2259
NdeI	CATATG	1 cut(s)	1676
NdeII	GATC	7 cut(s)	304, 541, 1007, 1384, 1420, 1427, 2260
NlaIV	GGNNCC	3 cut(s)	324, 1480, 1684
NmuCI	GTSAC	2 cut(s)	1850, 1974
NruI	TCGCGA	1 cut(s)	2259
NsiI	ATGCAT	1 cut(s)	1676
NspI	RCATGY	2 cut(s)	349, 1674
PaeI	GCATGC	2 cut(s)	349, 1674
PaeR7I	CTCGAG	1 cut(s)	465
PaqCI	CACCTGC	1 cut(s)	1518
PceI	AGGCCT	1 cut(s)	570
PctI	GAATGC	1 cut(s)	831
PdmI	GAANNNNTTC	4 cut(s)	598, 624, 993, 2279
PfeI	GAWTC	8 cut(s)	457, 844, 941, 1079, 1277, 1379, 1491, 2150
PflMI	CCANNNNNTGG	2 cut(s)	1004, 1501
Ple19I	CGATCG	1 cut(s)	2263
PleI	GAGTC	4 cut(s)	686, 804, 2138, 2237
PpsI	GAGTC	4 cut(s)	686, 804, 2138, 2237
PpuMI	RGGWCCY	1 cut(s)	1581
Psp5II	RGGWCCY	1 cut(s)	1581
Psp6I	CCWGG	5 cut(s)	28, 381, 562, 1626, 1965
PspEI	GGTNACC	1 cut(s)	449
PspGI	CCWGG	5 cut(s)	28, 381, 562, 1626, 1965
PspN4I	GGNNCC	3 cut(s)	324, 1480, 1684
PspPI	GGNCC	2 cut(s)	26, 1581
PspPPI	RGGWCCY	1 cut(s)	1581
PstI	CTGCAG	1 cut(s)	1437
PstNI	CAGNNNCTG	2 cut(s)	86, 1004
PsuI	RGATCY	1 cut(s)	541
PvuI	CGATCG	1 cut(s)	2263
PvuII	CAGCTG	1 cut(s)	523
RruI	TCGCGA	1 cut(s)	2259
RsaI	GTAC	5 cut(s)	1451, 1591, 1920, 2193, 2307
RsaNI	GTAC	5 cut(s)	1450, 1590, 1919, 2192, 2306
RseI	CAYNNNNRTG	3 cut(s)	867, 1557, 1675
SacII	CCGCGG	1 cut(s)	96
SaqAI	TTAA	7 cut(s)	186, 317, 645, 809, 911, 2024, 2135
Sau3AI	GATC	7 cut(s)	304, 541, 1007, 1384, 1420, 1427, 2260
Sau96I	GGNCC	2 cut(s)	26, 1581
ScaI	AGTACT	1 cut(s)	1451
SchI	GAGTC	4 cut(s)	686, 805, 2139, 2237
ScrFI	CCNGG	5 cut(s)	30, 383, 564, 1628, 1967
SduI	GDGCHC	5 cut(s)	41, 445, 1509, 1726, 2093
SexAI	ACCWGGT	1 cut(s)	1965
SfaNI	GCATC	6 cut(s)	698, 891, 1367, 1522, 1861, 1942
SfcI	CTRYAG	2 cut(s)	1433, 1585
Sfr274I	CTCGAG	1 cut(s)	465
Sfr303I	CCGCGG	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	1581
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	3 cut(s)	867, 1557, 1675
SmlI	CTYRAG	3 cut(s)	208, 465, 2134
SmoI	CTYRAG	3 cut(s)	208, 465, 2134
SphI	GCATGC	2 cut(s)	349, 1674
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	2 cut(s)	93, 95
SspI	AATATT	3 cut(s)	401, 481, 1526
SspMI	CTAG	7 cut(s)	261, 350, 572, 1305, 2067, 2126, 2253
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	5 cut(s)	28, 381, 562, 1626, 1965
StyI	CCWWGG	1 cut(s)	1518
TaaI	ACNGT	4 cut(s)	374, 1546, 1728, 1923
TaiI	ACGT	1 cut(s)	1693
TaqI	TCGA	6 cut(s)	137, 339, 466, 839, 1335, 2198
TatI	WGTACW	5 cut(s)	1449, 1589, 1918, 2191, 2305
TauI	GCSGC	2 cut(s)	95, 98
TfiI	GAWTC	8 cut(s)	457, 844, 941, 1079, 1277, 1379, 1491, 2150
Tru1I	TTAA	7 cut(s)	186, 317, 645, 809, 911, 2024, 2135
Tru9I	TTAA	7 cut(s)	186, 317, 645, 809, 911, 2024, 2135
TscAI	CASTG	6 cut(s)	1009, 1437, 1731, 1788, 1823, 2085
TseFI	GTSAC	2 cut(s)	1850, 1974
TseI	GCWGC	8 cut(s)	86, 89, 98, 101, 295, 523, 711, 2111
Tsp45I	GTSAC	2 cut(s)	1850, 1974
TspGWI	ACGGA	3 cut(s)	77, 1364, 2159
TspRI	CASTG	6 cut(s)	1009, 1437, 1731, 1788, 1823, 2085
Van91I	CCANNNNNTGG	2 cut(s)	1004, 1501
Vha464I	CTTAAG	1 cut(s)	2134
VneI	GTGCAC	2 cut(s)	441, 2089
VpaK11BI	GGWCC	1 cut(s)	1581
XagI	CCTNNNNNAGG	2 cut(s)	1473, 1631
XapI	RAATTY	5 cut(s)	970, 993, 1052, 1318, 1601
XceI	RCATGY	2 cut(s)	349, 1674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1942
XhoI	CTCGAG	1 cut(s)	465
XmnI	GAANNNNTTC	4 cut(s)	598, 624, 993, 2279
XspI	CTAG	7 cut(s)	261, 350, 572, 1305, 2067, 2126, 2253
ZrmI	AGTACT	1 cut(s)	1451
Zsp2I	ATGCAT	1 cut(s)	1676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.