Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G35560 AT5G35560 |
| fragaria_vesca | FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 FvH4_1g08450 |
| malus_domestica | MD00G1142500.v1.1 MD02G1088900.v1.1 MD02G1089000.v1.1 MD15G1216100.v1.1 |
| prunus_persica | Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 Prupe.7G200900_v2.0.a1 |
| pyrus_communis | pycom15g19170 |
| rosa_chinensis | RchiOBHm_Chr2g0094551 |
| rosa_laevigata | RLG00000016501 |
| rosa_multiflora | Rmu_sc0004359.1_g000040 |
| rosa_roxburghii | Rroxscaffold_2G00147070 |
| rosa_rugosa | Rorug02G0044800 Rorug02G0044900 Rorug02G0045000 Rorug02G0045100 Rorug02G0045100 Rorug02G0045100 |
| rosa_samantha | Rh2AG093000 Rh2BG093300 Rh2CG095700 Rh2DG092100 |
| rosa_wichuraiana | Rw7G039010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 514 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 661 |
| Acc16I | TGCGCA | 1 cut(s) | 440 |
| Acc36I | ACCTGC | 1 cut(s) | 514 |
| AccB1I | GGYRCC | 1 cut(s) | 526 |
| AccIII | TCCGGA | 1 cut(s) | 514 |
| AciI | CCGC | 1 cut(s) | 96 |
| AclI | AACGTT | 1 cut(s) | 1179 |
| AclWI | GGATC | 6 cut(s) | 315, 552, 1190, 1519, 1882, 2406 |
| AcoI | YGGCCR | 2 cut(s) | 1212, 1453 |
| AcsI | RAATTY | 5 cut(s) | 460, 624, 972, 1402, 1685 |
| AcuI | CTGAAG | 2 cut(s) | 246, 1269 |
| AdeI | CACNNNGTG | 1 cut(s) | 1703 |
| AfaI | GTAC | 5 cut(s) | 302, 1535, 1675, 2277, 2391 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 35, 682, 1559, 1902 |
| AflII | CTTAAG | 1 cut(s) | 2107 |
| AjnI | CCWGG | 2 cut(s) | 565, 2049 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 852, 884 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 232, 264 |
| AluBI | AGCT | 8 cut(s) | 288, 325, 733, 1356, 2128, 2180, 2195, 2362 |
| AluI | AGCT | 8 cut(s) | 288, 325, 733, 1356, 2128, 2180, 2195, 2362 |
| Alw21I | GWGCWC | 5 cut(s) | 1593, 1708, 1810, 2177, 2246 |
| Alw26I | GTCTC | 1 cut(s) | 1424 |
| Alw44I | GTGCAC | 2 cut(s) | 1704, 2173 |
| AlwI | GGATC | 6 cut(s) | 315, 552, 1190, 1519, 1882, 2406 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 83, 98 |
| Aor13HI | TCCGGA | 1 cut(s) | 514 |
| AoxI | GGCC | 4 cut(s) | 122, 1212, 1453, 2159 |
| ApaLI | GTGCAC | 2 cut(s) | 1704, 2173 |
| ApeKI | GCWGC | 6 cut(s) | 83, 92, 98, 325, 714, 2195 |
| ApoI | RAATTY | 5 cut(s) | 460, 624, 972, 1402, 1685 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2264, 2296 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 601 |
| AspLEI | GCGC | 2 cut(s) | 276, 441 |
| AspS9I | GGNCC | 1 cut(s) | 654 |
| AsuHPI | GGTGA | 6 cut(s) | 359, 1054, 1109, 1180, 2052, 2065 |
| AvaII | GGWCC | 1 cut(s) | 654 |
| AxyI | CCTNAGG | 1 cut(s) | 492 |
| BaeGI | GKGCMC | 2 cut(s) | 1708, 2177 |
| BalI | TGGCCA | 1 cut(s) | 1455 |
| BanI | GGYRCC | 1 cut(s) | 526 |
| BanII | GRGCYC | 1 cut(s) | 1385 |
| BauI | CACGAG | 1 cut(s) | 468 |
| Bbv12I | GWGCWC | 5 cut(s) | 1593, 1708, 1810, 2177, 2246 |
| BbvCI | CCTCAGC | 1 cut(s) | 1692 |
| BbvI | GCAGC | 6 cut(s) | 70, 85, 104, 312, 701, 2182 |
| BccI | CCATC | 4 cut(s) | 133, 146, 799, 1133 |
| BceAI | ACGGC | 2 cut(s) | 1227, 1790 |
| BciT130I | CCWGG | 2 cut(s) | 567, 2051 |
| BciVI | GTATCC | 1 cut(s) | 2308 |
| BcoDI | GTCTC | 1 cut(s) | 1424 |
| BfmI | CTRYAG | 2 cut(s) | 87, 1296 |
| BfoI | RGCGCY | 1 cut(s) | 277 |
| BfrI | CTTAAG | 1 cut(s) | 2107 |
| BfuAI | ACCTGC | 1 cut(s) | 514 |
| BfuI | GTATCC | 1 cut(s) | 2308 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 334 |
| BisI | GCNGC | 7 cut(s) | 84, 93, 96, 99, 326, 715, 2196 |
| BlsI | GCNGC | 7 cut(s) | 85, 94, 97, 100, 327, 716, 2197 |
| BmcAI | AGTACT | 2 cut(s) | 302, 1535 |
| Bme1390I | CCNGG | 2 cut(s) | 567, 2051 |
| Bme18I | GGWCC | 1 cut(s) | 654 |
| BmgT120I | GGNCC | 1 cut(s) | 654 |
| BmiI | GGNNCC | 6 cut(s) | 241, 477, 528, 849, 1564, 1768 |
| BmrFI | CCNGG | 2 cut(s) | 567, 2051 |
| BmsI | GCATC | 7 cut(s) | 701, 815, 894, 1451, 1606, 1945, 2026 |
| BpmI | CTGGAG | 2 cut(s) | 588, 1354 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1494, 1692 |
| BpuEI | CTTGAG | 1 cut(s) | 826 |
| BsaAI | YACGTR | 1 cut(s) | 449 |
| BsaJI | CCNNGG | 4 cut(s) | 119, 565, 1602, 2199 |
| BsaWI | WCCGGW | 2 cut(s) | 514, 675 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 100, 130 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 35, 682, 1559, 1902 |
| Bse118I | RCCGGY | 1 cut(s) | 1921 |
| Bse1I | ACTGG | 5 cut(s) | 25, 1215, 1371, 1900, 2162 |
| Bse21I | CCTNAGG | 1 cut(s) | 492 |
| Bse3DI | GCAATG | 1 cut(s) | 970 |
| BseAI | TCCGGA | 1 cut(s) | 514 |
| BseBI | CCWGG | 2 cut(s) | 567, 2051 |
| BseDI | CCNNGG | 4 cut(s) | 119, 565, 1602, 2199 |
| BseGI | GGATG | 7 cut(s) | 217, 716, 778, 1579, 1597, 1960, 2102 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 35, 682, 1559, 1902 |
| BseMI | GCAATG | 1 cut(s) | 970 |
| BseMII | CTCAG | 6 cut(s) | 506, 1020, 1248, 1683, 1878, 2087 |
| BseNI | ACTGG | 5 cut(s) | 25, 1215, 1371, 1900, 2162 |
| BseRI | GAGGAG | 3 cut(s) | 743, 1046, 1733 |
| BseSI | GKGCMC | 2 cut(s) | 1708, 2177 |
| BseXI | GCAGC | 6 cut(s) | 70, 85, 104, 312, 701, 2182 |
| BseYI | CCCAGC | 1 cut(s) | 1388 |
| BsgI | GTGCAG | 2 cut(s) | 1690, 2024 |
| BshFI | GGCC | 4 cut(s) | 124, 1214, 1455, 2161 |
| BshNI | GGYRCC | 1 cut(s) | 526 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1593, 1708, 1810, 2177, 2246 |
| BsiSI | CCGG | 3 cut(s) | 515, 676, 1922 |
| BslFI | GGGAC | 2 cut(s) | 1878, 1949 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 35, 682, 1559, 1902 |
| BsmAI | GTCTC | 1 cut(s) | 1424 |
| BsmBI | CGTCTC | 1 cut(s) | 1424 |
| BsmFI | GGGAC | 2 cut(s) | 1878, 1949 |
| BsmI | GAATGC | 2 cut(s) | 834, 1113 |
| BsnI | GGCC | 4 cut(s) | 124, 1214, 1455, 2161 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1385, 1593, 1708, 1810, 2177, 2246 |
| Bsp13I | TCCGGA | 1 cut(s) | 514 |
| Bsp1407I | TGTACA | 2 cut(s) | 2275, 2389 |
| BspACI | CCGC | 1 cut(s) | 96 |
| BspANI | GGCC | 4 cut(s) | 124, 1214, 1455, 2161 |
| BspCNI | CTCAG | 6 cut(s) | 505, 1021, 1249, 1684, 1877, 2086 |
| BspEI | TCCGGA | 1 cut(s) | 514 |
| BspLI | GGNNCC | 6 cut(s) | 241, 477, 528, 849, 1564, 1768 |
| BspMI | ACCTGC | 1 cut(s) | 514 |
| BspPI | GGATC | 6 cut(s) | 315, 552, 1190, 1519, 1882, 2406 |
| BspT107I | GGYRCC | 1 cut(s) | 526 |
| BspTI | CTTAAG | 1 cut(s) | 2107 |
| BsrDI | GCAATG | 1 cut(s) | 970 |
| BsrFI | RCCGGY | 1 cut(s) | 1921 |
| BsrGI | TGTACA | 2 cut(s) | 2275, 2389 |
| BsrI | ACTGG | 5 cut(s) | 25, 1215, 1371, 1900, 2162 |
| BssAI | RCCGGY | 1 cut(s) | 1921 |
| BssECI | CCNNGG | 4 cut(s) | 119, 565, 1602, 2199 |
| BssSI | CACGAG | 1 cut(s) | 468 |
| BssT1I | CCWWGG | 2 cut(s) | 1602, 2199 |
| Bst2BI | CACGAG | 1 cut(s) | 468 |
| Bst2UI | CCWGG | 2 cut(s) | 567, 2051 |
| Bst4CI | ACNGT | 5 cut(s) | 1297, 1570, 1630, 1812, 2280 |
| Bst6I | CTCTTC | 1 cut(s) | 1431 |
| BstAFI | CTTAAG | 1 cut(s) | 2107 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 83, 98, 1703, 1912 |
| BstAUI | TGTACA | 2 cut(s) | 2275, 2389 |
| BstBAI | YACGTR | 1 cut(s) | 449 |
| BstC8I | GCNNGC | 4 cut(s) | 286, 1645, 1756, 1913 |
| BstDEI | CTNAG | 9 cut(s) | 492, 819, 1016, 1029, 1257, 1494, 1692, 1864, 2073 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1557 |
| BstF5I | GGATG | 7 cut(s) | 217, 716, 778, 1579, 1597, 1960, 2102 |
| BstH2I | RGCGCY | 1 cut(s) | 277 |
| BstHHI | GCGC | 2 cut(s) | 276, 441 |
| BstMAI | GTCTC | 1 cut(s) | 1424 |
| BstNI | CCWGG | 2 cut(s) | 567, 2051 |
| BstNSI | RCATGY | 2 cut(s) | 1758, 1942 |
| BstSCI | CCNGG | 2 cut(s) | 565, 2049 |
| BstSFI | CTRYAG | 2 cut(s) | 87, 1296 |
| BstSLI | GKGCMC | 2 cut(s) | 1708, 2177 |
| BstV1I | GCAGC | 6 cut(s) | 70, 85, 104, 312, 701, 2182 |
| BstX2I | RGATCY | 2 cut(s) | 544, 2398 |
| BstYI | RGATCY | 2 cut(s) | 544, 2398 |
| Bsu36I | CCTNAGG | 1 cut(s) | 492 |
| BsuI | GTATCC | 1 cut(s) | 2308 |
| BsuRI | GGCC | 4 cut(s) | 124, 1214, 1455, 2161 |
| BtsCI | GGATG | 7 cut(s) | 217, 716, 778, 1579, 1597, 1960, 2102 |
| BtsIMutI | CAGTG | 5 cut(s) | 1566, 1808, 1907, 2169, 2220 |
| BveI | ACCTGC | 1 cut(s) | 514 |
| Cac8I | GCNNGC | 4 cut(s) | 286, 1645, 1756, 1913 |
| CaiI | CAGNNNCTG | 2 cut(s) | 83, 98 |
| CfoI | GCGC | 2 cut(s) | 276, 441 |
| Cfr10I | RCCGGY | 1 cut(s) | 1921 |
| Cfr13I | GGNCC | 1 cut(s) | 654 |
| CpoI | CGGWCCG | 1 cut(s) | 654 |
| CsiI | ACCWGGT | 1 cut(s) | 2049 |
| Csp6I | GTAC | 5 cut(s) | 301, 1534, 1674, 2276, 2390 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2112, 2147 |
| CspI | CGGWCCG | 1 cut(s) | 654 |
| CviQI | GTAC | 5 cut(s) | 301, 1534, 1674, 2276, 2390 |
| DdeI | CTNAG | 9 cut(s) | 492, 819, 1016, 1029, 1257, 1494, 1692, 1864, 2073 |
| DraI | TTTAAA | 3 cut(s) | 321, 649, 1077 |
| DraIII | CACNNNGTG | 1 cut(s) | 1703 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 661 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 661 |
| EaeI | YGGCCR | 2 cut(s) | 1212, 1453 |
| Eam1104I | CTCTTC | 1 cut(s) | 1431 |
| EarI | CTCTTC | 1 cut(s) | 1431 |
| Eco130I | CCWWGG | 2 cut(s) | 1602, 2199 |
| Eco24I | GRGCYC | 1 cut(s) | 1385 |
| Eco47I | GGWCC | 1 cut(s) | 654 |
| Eco57I | CTGAAG | 2 cut(s) | 246, 1269 |
| Eco81I | CCTNAGG | 1 cut(s) | 492 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1557 |
| EcoRII | CCWGG | 2 cut(s) | 565, 2049 |
| EcoT14I | CCWWGG | 2 cut(s) | 1602, 2199 |
| EcoT22I | ATGCAT | 1 cut(s) | 1760 |
| EcoT38I | GRGCYC | 1 cut(s) | 1385 |
| ErhI | CCWWGG | 2 cut(s) | 1602, 2199 |
| Esp3I | CGTCTC | 1 cut(s) | 1424 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2285, 2317 |
| FaqI | GGGAC | 2 cut(s) | 1878, 1949 |
| FauNDI | CATATG | 1 cut(s) | 1760 |
| Fnu4HI | GCNGC | 7 cut(s) | 84, 93, 96, 99, 326, 715, 2196 |
| FokI | GGATG | 7 cut(s) | 204, 723, 765, 1566, 1584, 1967, 2089 |
| FriOI | GRGCYC | 1 cut(s) | 1385 |
| Fsp4HI | GCNGC | 7 cut(s) | 84, 93, 96, 99, 326, 715, 2196 |
| FspI | TGCGCA | 1 cut(s) | 440 |
| GlaI | GCGC | 2 cut(s) | 275, 440 |
| GluI | GCNGC | 7 cut(s) | 84, 93, 96, 99, 326, 715, 2196 |
| GsaI | CCCAGC | 1 cut(s) | 1392 |
| GsuI | CTGGAG | 2 cut(s) | 588, 1354 |
| HaeII | RGCGCY | 1 cut(s) | 277 |
| HaeIII | GGCC | 4 cut(s) | 124, 1214, 1455, 2161 |
| HapII | CCGG | 3 cut(s) | 515, 676, 1922 |
| HhaI | GCGC | 2 cut(s) | 276, 441 |
| Hin6I | GCGC | 2 cut(s) | 274, 439 |
| HinP1I | GCGC | 2 cut(s) | 274, 439 |
| HindIII | AAGCTT | 3 cut(s) | 286, 2126, 2360 |
| HinfI | GANTC | 9 cut(s) | 695, 799, 1082, 1126, 1229, 1361, 1463, 2234, 2327 |
| HpaII | CCGG | 3 cut(s) | 515, 676, 1922 |
| HphI | GGTGA | 6 cut(s) | 359, 1054, 1109, 1180, 2052, 2065 |
| Hpy166II | GTNNAC | 5 cut(s) | 446, 1706, 2175, 2258, 2371 |
| Hpy188I | TCNGA | 7 cut(s) | 120, 459, 1234, 1258, 1360, 1468, 1887 |
| Hpy8I | GTNNAC | 5 cut(s) | 446, 1706, 2175, 2258, 2371 |
| HpyAV | CCTTC | 7 cut(s) | 612, 756, 792, 1153, 1158, 2305, 2416 |
| HpyCH4III | ACNGT | 5 cut(s) | 1297, 1570, 1630, 1812, 2280 |
| HpyCH4IV | ACGT | 4 cut(s) | 235, 448, 1179, 1546 |
| HpyF3I | CTNAG | 9 cut(s) | 492, 819, 1016, 1029, 1257, 1494, 1692, 1864, 2073 |
| HpySE526I | ACGT | 4 cut(s) | 235, 448, 1179, 1546 |
| HspAI | GCGC | 2 cut(s) | 274, 439 |
| Kpn2I | TCCGGA | 1 cut(s) | 514 |
| LmnI | GCTCC | 5 cut(s) | 640, 730, 1588, 1772, 1805 |
| Lsp1109I | GCAGC | 6 cut(s) | 70, 85, 104, 312, 701, 2182 |
| LweI | GCATC | 7 cut(s) | 701, 815, 894, 1451, 1606, 1945, 2026 |
| MabI | ACCWGGT | 1 cut(s) | 2049 |
| MaeII | ACGT | 4 cut(s) | 235, 448, 1179, 1546 |
| MaeIII | GTNAC | 4 cut(s) | 190, 678, 2058, 2076 |
| MfeI | CAATTG | 1 cut(s) | 1191 |
| MflI | RGATCY | 2 cut(s) | 544, 2398 |
| MhlI | GDGCHC | 6 cut(s) | 1385, 1593, 1708, 1810, 2177, 2246 |
| MlsI | TGGCCA | 1 cut(s) | 1455 |
| MluNI | TGGCCA | 1 cut(s) | 1455 |
| MlyI | GAGTC | 3 cut(s) | 689, 808, 2321 |
| MmeI | TCCRAC | 2 cut(s) | 885, 1794 |
| Mox20I | TGGCCA | 1 cut(s) | 1455 |
| Mph1103I | ATGCAT | 1 cut(s) | 1760 |
| MroI | TCCGGA | 1 cut(s) | 514 |
| MroXI | GAANNNNTTC | 1 cut(s) | 601 |
| MscI | TGGCCA | 1 cut(s) | 1455 |
| MslI | CAYNNNNRTG | 2 cut(s) | 870, 1759 |
| Msp20I | TGGCCA | 1 cut(s) | 1455 |
| MspA1I | CMGCKG | 2 cut(s) | 98, 2180 |
| MspCI | CTTAAG | 1 cut(s) | 2107 |
| MspI | CCGG | 3 cut(s) | 515, 676, 1922 |
| MspR9I | CCNGG | 2 cut(s) | 567, 2051 |
| MunI | CAATTG | 1 cut(s) | 1191 |
| Mva1269I | GAATGC | 2 cut(s) | 834, 1113 |
| MvaI | CCWGG | 2 cut(s) | 567, 2051 |
| NdeI | CATATG | 1 cut(s) | 1760 |
| NlaIV | GGNNCC | 6 cut(s) | 241, 477, 528, 849, 1564, 1768 |
| NmuCI | GTSAC | 1 cut(s) | 2058 |
| NsbI | TGCGCA | 1 cut(s) | 440 |
| NsiI | ATGCAT | 1 cut(s) | 1760 |
| NspI | RCATGY | 2 cut(s) | 1758, 1942 |
| PaeI | GCATGC | 1 cut(s) | 1758 |
| PaqCI | CACCTGC | 1 cut(s) | 514 |
| PctI | GAATGC | 2 cut(s) | 834, 1113 |
| PdmI | GAANNNNTTC | 1 cut(s) | 601 |
| PfeI | GAWTC | 6 cut(s) | 1082, 1126, 1229, 1361, 1463, 2234 |
| PkrI | GCNGC | 7 cut(s) | 85, 94, 97, 100, 327, 716, 2197 |
| PleI | GAGTC | 3 cut(s) | 689, 807, 2321 |
| PpsI | GAGTC | 3 cut(s) | 689, 807, 2321 |
| Ppu21I | YACGTR | 1 cut(s) | 449 |
| Psp1406I | AACGTT | 1 cut(s) | 1179 |
| Psp6I | CCWGG | 2 cut(s) | 565, 2049 |
| PspFI | CCCAGC | 1 cut(s) | 1388 |
| PspGI | CCWGG | 2 cut(s) | 565, 2049 |
| PspN4I | GGNNCC | 6 cut(s) | 241, 477, 528, 849, 1564, 1768 |
| PspPI | GGNCC | 1 cut(s) | 654 |
| PstNI | CAGNNNCTG | 2 cut(s) | 83, 98 |
| PsuI | RGATCY | 2 cut(s) | 544, 2398 |
| PvuII | CAGCTG | 1 cut(s) | 2180 |
| RsaI | GTAC | 5 cut(s) | 302, 1535, 1675, 2277, 2391 |
| RsaNI | GTAC | 5 cut(s) | 301, 1534, 1674, 2276, 2390 |
| RseI | CAYNNNNRTG | 2 cut(s) | 870, 1759 |
| Rsr2I | CGGWCCG | 1 cut(s) | 654 |
| RsrII | CGGWCCG | 1 cut(s) | 654 |
| SatI | GCNGC | 7 cut(s) | 84, 93, 96, 99, 326, 715, 2196 |
| Sau96I | GGNCC | 1 cut(s) | 654 |
| ScaI | AGTACT | 2 cut(s) | 302, 1535 |
| SchI | GAGTC | 3 cut(s) | 689, 808, 2321 |
| ScrFI | CCNGG | 2 cut(s) | 567, 2051 |
| SduI | GDGCHC | 6 cut(s) | 1385, 1593, 1708, 1810, 2177, 2246 |
| SexAI | ACCWGGT | 1 cut(s) | 2049 |
| SfaNI | GCATC | 7 cut(s) | 701, 815, 894, 1451, 1606, 1945, 2026 |
| SfcI | CTRYAG | 2 cut(s) | 87, 1296 |
| SinI | GGWCC | 1 cut(s) | 654 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 870, 1759 |
| SmlI | CTYRAG | 2 cut(s) | 841, 2107 |
| SmoI | CTYRAG | 2 cut(s) | 841, 2107 |
| SphI | GCATGC | 1 cut(s) | 1758 |
| SsiI | CCGC | 1 cut(s) | 96 |
| StyD4I | CCNGG | 2 cut(s) | 565, 2049 |
| StyI | CCWWGG | 2 cut(s) | 1602, 2199 |
| TaaI | ACNGT | 5 cut(s) | 1297, 1570, 1630, 1812, 2280 |
| TaiI | ACGT | 4 cut(s) | 238, 451, 1182, 1549 |
| TaqI | TCGA | 4 cut(s) | 342, 2282, 2325, 2347 |
| TaqII | GACCGA | 1 cut(s) | 671 |
| TatI | WGTACW | 5 cut(s) | 300, 1533, 1673, 2275, 2389 |
| TauI | GCSGC | 1 cut(s) | 98 |
| TfiI | GAWTC | 6 cut(s) | 1082, 1126, 1229, 1361, 1463, 2234 |
| TscAI | CASTG | 5 cut(s) | 1573, 1815, 1907, 2169, 2220 |
| TseFI | GTSAC | 1 cut(s) | 2058 |
| TseI | GCWGC | 6 cut(s) | 83, 92, 98, 325, 714, 2195 |
| Tsp45I | GTSAC | 1 cut(s) | 2058 |
| TspGWI | ACGGA | 6 cut(s) | 74, 667, 1448, 1880, 2243, 2411 |
| TspRI | CASTG | 5 cut(s) | 1573, 1815, 1907, 2169, 2220 |
| Vha464I | CTTAAG | 1 cut(s) | 2107 |
| VneI | GTGCAC | 2 cut(s) | 1704, 2173 |
| VpaK11BI | GGWCC | 1 cut(s) | 654 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1557 |
| XapI | RAATTY | 5 cut(s) | 460, 624, 972, 1402, 1685 |
| XbaI | TCTAGA | 1 cut(s) | 1681 |
| XceI | RCATGY | 2 cut(s) | 1758, 1942 |
| XmnI | GAANNNNTTC | 1 cut(s) | 601 |
| ZrmI | AGTACT | 2 cut(s) | 302, 1535 |
| Zsp2I | ATGCAT | 1 cut(s) | 1760 |