FvH4_1g08620

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003206
Physical Location & Seq
Reverse (-)
4574503 .. 4578615
4113 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08620.t5

Sequence Viewer

Length: 876 bp
ATGATGTTTACGATTTCAGTTCCAAAACCTGGACTGGTGAGATTTTCTCATGACAGAACAAGGTGTCTTCAAAAGTTTGACAGGACTAATTCTGTTTGGTCTATGAAAATGGAGCCAAAGTTCTCTCATAACAGGAAGATTGAAGAATTGTCAGTAGAGCTTCCAGCACAACCCCATCCTCCTCATCTTGAGTCGTCTAGGGACCGTGCTCTTCAATTTAATCGGGGGCAACCTTCAGATAAAGATTTAGATCCTGACGATGTGTTTGAGTTTGGTGGATATGTTGCACGAGAAGCCATGTGTGATGAAGAATACTGGACAGCAGCATTTTTGCGTGCAGAAACTCACTGGGAGGATCGAAATCGTGATCGATATGTTGAGAGCCACCTAAGGAAATACACAGACCAGGAGTTTAATGAAATAAAAAAGCGAAGAAATGTCCAGTTTGGAAATAAATGCAGATGCATTGTTGCGATGAAGAAGGATTCAAAGGATGTGAAACGCCCTGTTTTAAAAAGCATGGTTGGAACCCTTGATTTGAGGACCCGGCACTTGGTGGGTGGAGAGACCTTTCCAGAGGAACGAGTAAAACCTTCCAACTTCGGGAGCTTCAGAATGACGCGCTCAAATAGATATGGTTATATTGCAAACTTGTGTGTTAGCAAACCAGCACGTCGCCAGGGTGTTGCAACAAATATGCTGCACTTTGCAATTAAACAAGCAAAGTTGGATGAATTAGAACGGGTATATGTGCATGTTGAAAGAAAGAACAAAACAGCACAGGATCTGTACAAAAAGATGGGATTTCAGATGATTGAAAGAGCGACCCCCCAGTTGGAAGAAAAACAACTTTATTTGCTTTGTTTGGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10

Protein Analysis

292

Amino Acids

34.33

Weight (kDa)

9.4

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_10 PF13673 169 - 242 7.6e-11 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 170 - 237 2.3e-13 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 173 - 238 1.2e-09 Acetyltransferase (GNAT) domain
FR47 PF08445 178 - 241 3.1e-07 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 29
AccII CGCG 1 cut(s) 622
AclWI GGATC 3 cut(s) 245, 363, 792
AcuI CTGAAG 2 cut(s) 219, 595
AdeI CACNNNGTG 1 cut(s) 556
AfaI GTAC 1 cut(s) 791
AfiI CCNNNNNNNGG 4 cut(s) 29, 553, 603, 835
AgsI TTSAA 6 cut(s) 71, 143, 215, 489, 761, 818
AjiI CACGTC 1 cut(s) 674
AjnI CCWGG 3 cut(s) 28, 405, 678
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 2 cut(s) 160, 609
AluI AGCT 2 cut(s) 160, 609
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 3 cut(s) 245, 363, 792
AlwNI CAGNNNCTG 1 cut(s) 787
ApeKI GCWGC 2 cut(s) 323, 700
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 1 cut(s) 624
AspS9I GGNCC 2 cut(s) 202, 543
AsuC2I CCSGG 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 2 cut(s) 202, 543
AxyI CCTNAGG 1 cut(s) 389
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 2 cut(s) 335, 687
BccI CCATC 2 cut(s) 183, 793
BciT130I CCWGG 3 cut(s) 30, 407, 680
BcnI CCSGG 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 2 cut(s) 198, 874
BglII AGATCT 1 cut(s) 870
BisI GCNGC 2 cut(s) 324, 701
BlsI GCNGC 2 cut(s) 325, 702
Bme1390I CCNGG 4 cut(s) 30, 407, 547, 680
Bme18I GGWCC 2 cut(s) 202, 543
BmgBI CACGTC 1 cut(s) 674
BmgT120I GGNCC 2 cut(s) 202, 543
BmiI GGNNCC 4 cut(s) 114, 203, 529, 545
BmrFI CCNGG 4 cut(s) 30, 407, 547, 680
BmrI ACTGGG 2 cut(s) 358, 826
BmsI GCATC 1 cut(s) 452
BmuI ACTGGG 2 cut(s) 358, 826
BpiI GAAGAC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 547
Bsa29I ATCGAT 1 cut(s) 370
BsaBI GATNNNNATC 2 cut(s) 249, 360
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 679
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 553, 603, 835
Bse1I ACTGG 5 cut(s) 39, 320, 353, 442, 832
Bse21I CCTNAGG 1 cut(s) 389
Bse8I GATNNNNATC 2 cut(s) 249, 360
BseBI CCWGG 3 cut(s) 30, 407, 680
BseCI ATCGAT 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 679
BseGI GGATG 3 cut(s) 175, 499, 736
BseJI GATNNNNATC 2 cut(s) 249, 360
BseLI CCNNNNNNNGG 4 cut(s) 29, 553, 603, 835
BseNI ACTGG 5 cut(s) 39, 320, 353, 442, 832
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 335, 687
BsgI GTGCAG 2 cut(s) 357, 686
Bsh1236I CGCG 1 cut(s) 622
BshVI ATCGAT 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 547
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 4 cut(s) 29, 553, 603, 835
BsmAI GTCTC 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 211
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 5 cut(s) 250, 355, 367, 784, 870
BspDI ATCGAT 1 cut(s) 370
BspFNI CGCG 1 cut(s) 622
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 4 cut(s) 114, 203, 529, 545
BspPI GGATC 3 cut(s) 245, 363, 792
BspQI GCTCTTC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 560
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 5 cut(s) 39, 320, 353, 442, 832
BssECI CCNNGG 1 cut(s) 679
BssMI GATC 5 cut(s) 250, 355, 367, 784, 870
BssSI CACGAG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 30, 407, 680
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 389
BstF5I GGATG 3 cut(s) 175, 499, 736
BstFNI CGCG 1 cut(s) 622
BstHHI GCGC 1 cut(s) 624
BstKTI GATC 5 cut(s) 253, 358, 370, 787, 873
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 5 cut(s) 250, 355, 367, 784, 870
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 3 cut(s) 30, 407, 680
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 4 cut(s) 28, 405, 545, 678
BstUI CGCG 1 cut(s) 622
BstV1I GCAGC 2 cut(s) 335, 687
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 3 cut(s) 250, 784, 870
BstYI RGATCY 3 cut(s) 250, 784, 870
Bsu15I ATCGAT 1 cut(s) 370
Bsu36I CCTNAGG 1 cut(s) 389
BsuTUI ATCGAT 1 cut(s) 370
BtgZI GCGATG 1 cut(s) 488
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 3 cut(s) 175, 499, 736
BtsIMutI CAGTG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 787
CciI TCATGA 1 cut(s) 49
CfoI GCGC 1 cut(s) 624
Cfr13I GGNCC 2 cut(s) 202, 543
ClaI ATCGAT 1 cut(s) 370
CseI GACGC 1 cut(s) 628
Csp6I GTAC 1 cut(s) 790
CviAII CATG 4 cut(s) 50, 298, 520, 755
CviJI RGCY 5 cut(s) 115, 160, 296, 384, 609
CviKI_1 RGCY 5 cut(s) 115, 160, 296, 384, 609
CviQI GTAC 1 cut(s) 790
DdeI CTNAG 1 cut(s) 389
DpnI GATC 5 cut(s) 252, 357, 369, 786, 872
DpnII GATC 5 cut(s) 250, 355, 367, 784, 870
DraI TTTAAA 1 cut(s) 513
DraIII CACNNNGTG 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 2 cut(s) 202, 543
Eco57I CTGAAG 2 cut(s) 219, 595
Eco81I CCTNAGG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 543
EcoRII CCWGG 3 cut(s) 28, 405, 678
EcoT22I ATGCAT 1 cut(s) 467
FaeI CATG 4 cut(s) 53, 301, 523, 758
FaqI GGGAC 1 cut(s) 215
FatI CATG 4 cut(s) 49, 297, 519, 754
Fnu4HI GCNGC 2 cut(s) 324, 701
FokI GGATG 3 cut(s) 162, 506, 743
Fsp4HI GCNGC 2 cut(s) 324, 701
FspBI CTAG 2 cut(s) 198, 874
GlaI GCGC 1 cut(s) 623
GluI GCNGC 2 cut(s) 324, 701
HapII CCGG 1 cut(s) 547
HgaI GACGC 1 cut(s) 628
HhaI GCGC 1 cut(s) 624
Hin1II CATG 4 cut(s) 53, 301, 523, 758
Hin6I GCGC 1 cut(s) 622
HinP1I GCGC 1 cut(s) 622
HinfI GANTC 2 cut(s) 191, 485
HpaII CCGG 1 cut(s) 547
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 238, 614, 810
Hpy188III TCNNGA 6 cut(s) 50, 188, 254, 365, 575, 604
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 678
HpyAV CCTTC 3 cut(s) 243, 475, 603
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 9 cut(s) 287, 338, 459, 465, 647, 689, 703, 710, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 4 cut(s) 53, 301, 523, 758
HspAI GCGC 1 cut(s) 622
Kzo9I GATC 5 cut(s) 250, 355, 367, 784, 870
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 112, 606
Lsp1109I GCAGC 2 cut(s) 335, 687
LweI GCATC 1 cut(s) 452
MaeI CTAG 2 cut(s) 198, 874
MaeII ACGT 1 cut(s) 673
MalI GATC 5 cut(s) 252, 357, 369, 786, 872
MboI GATC 5 cut(s) 250, 355, 367, 784, 870
MboII GAAGA 8 cut(s) 59, 148, 155, 203, 320, 444, 490, 851
MflI RGATCY 3 cut(s) 250, 784, 870
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 5 cut(s) 88, 146, 215, 711, 734
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 4 cut(s) 505, 621, 708, 816
MnlI CCTC 5 cut(s) 189, 192, 346, 534, 571
Mph1103I ATGCAT 1 cut(s) 467
MseI TTAA 4 cut(s) 219, 414, 512, 714
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 4 cut(s) 30, 407, 547, 680
MvaI CCWGG 3 cut(s) 30, 407, 680
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 547
NdeII GATC 5 cut(s) 250, 355, 367, 784, 870
NlaIII CATG 4 cut(s) 53, 301, 523, 758
NlaIV GGNNCC 4 cut(s) 114, 203, 529, 545
NsiI ATGCAT 1 cut(s) 467
NspI RCATGY 1 cut(s) 758
PagI TCATGA 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 29
PkrI GCNGC 2 cut(s) 325, 702
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 543
Psp5II RGGWCCY 1 cut(s) 543
Psp6I CCWGG 3 cut(s) 28, 405, 678
PspGI CCWGG 3 cut(s) 28, 405, 678
PspN4I GGNNCC 4 cut(s) 114, 203, 529, 545
PspPI GGNCC 2 cut(s) 202, 543
PspPPI RGGWCCY 1 cut(s) 543
PstNI CAGNNNCTG 1 cut(s) 787
PsuI RGATCY 3 cut(s) 250, 784, 870
RsaI GTAC 1 cut(s) 791
RsaNI GTAC 1 cut(s) 790
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 4 cut(s) 219, 414, 512, 714
SatI GCNGC 2 cut(s) 324, 701
Sau3AI GATC 5 cut(s) 250, 355, 367, 784, 870
Sau96I GGNCC 2 cut(s) 202, 543
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 4 cut(s) 30, 407, 547, 680
SduI GDGCHC 1 cut(s) 211
SetI ASST 9 cut(s) 31, 65, 162, 235, 390, 572, 595, 611, 676
SfaNI GCATC 1 cut(s) 452
SinI GGWCC 2 cut(s) 202, 543
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 5 cut(s) 88, 146, 215, 711, 734
SspMI CTAG 2 cut(s) 198, 874
StyD4I CCNGG 4 cut(s) 28, 405, 545, 678
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 676
TaqI TCGA 2 cut(s) 358, 370
TasI AATT 5 cut(s) 88, 146, 215, 711, 734
TatI WGTACW 1 cut(s) 789
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 4 cut(s) 219, 414, 512, 714
Tru9I TTAA 4 cut(s) 219, 414, 512, 714
TscAI CASTG 1 cut(s) 353
TseI GCWGC 2 cut(s) 323, 700
TspDTI ATGAA 5 cut(s) 119, 321, 432, 491, 747
TspRI CASTG 1 cut(s) 353
Van91I CCANNNNNTGG 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 202, 543
XceI RCATGY 1 cut(s) 758
XspI CTAG 2 cut(s) 198, 874
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.