Rroxscaffold_2G00146800

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003206
Physical Location & Seq
Forward (+)
84675331 .. 84679242
3912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146800.1

Sequence Viewer

Length: 867 bp
ATGATGTTCACGATTTCAGTTCCGAAATCTGGACTGGTGAGATTTTCCCATGATGGAACAAGGCGTCCTCAAAAGTTTGACAGGACTGATTTTGTTTGGTCTATGAAAATGGAGTCAAAGTTTTCTCATGACAGGAAGATTGAAGAATTGTCAGTAGAGCTTCCAACACCACCTAGTCCTCATCTTGATTCGTCTAGGGACCGTGCTCTTCAATTTAACCGGGGGCAACCTTCAGGTAAAGATTTAGATCCTGACAATGTGTTTGAATTTGGAGGATATATTGCACGAGAAGCCATGTGCGATGAAGAATACTGGACAGCAGCATATTTACGTGCAGAAACTCGCTGGGAAGATCGAAATCATGACCGATATGTGGAAAGCCACCTAAGGAAATATACAGAGCAGGAGTTTAATGAAATCAAAAGGCGAAGCAATGTCCAGTTTGGGAAAAAATGCAAATGCATTGTGACGATGAAGAAGGATTCAAAGAATGTGAAACGCACTGTTCTGAAAAGCATGGTTGGAACACTTGATTTGAGGATCCGGTACTTGTTGAATGGAGAGACCTTTCCAGAGGAACAAGTAAAACCTTCCATCTTCAGCAGCTTCTCAATGACTCGCTCAAATAGATATGGTTATATTGCAAACTTGTGTGTTATCAAACCAGCACGTCGCCAGGGTGTTGCAAGAAATATGCTGCAGTTTGCTATTAAACAAGCAAAGTTGGATGAATTAGAACGGGTATATGTGCATGTCGACAGAAAGAACAAAAATGCACACAGGATCTGTACGAAAAGATGGGATTTCAGATCATTGAAAGCACGAACCCTCAGTTGGAAAAAGATGAACTTTATTTGCTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10

Protein Analysis

288

Amino Acids

34.12

Weight (kDa)

9.8

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 202 - 265 3.8e-09 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 756
AclWI GGATC 4 cut(s) 242, 535, 548, 791
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 2 cut(s) 216, 583
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 2 cut(s) 548, 790
AfiI CCNNNNNNNGG 3 cut(s) 29, 373, 834
AgsI TTSAA 6 cut(s) 143, 212, 266, 486, 556, 817
AjiI CACGTC 1 cut(s) 671
AjnI CCWGG 1 cut(s) 675
AjuI GAANNNNNNNTTGG 2 cut(s) 817, 849
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
AluBI AGCT 2 cut(s) 160, 606
AluI AGCT 2 cut(s) 160, 606
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 4 cut(s) 242, 535, 548, 791
AlwNI CAGNNNCTG 1 cut(s) 786
ApeKI GCWGC 3 cut(s) 320, 603, 697
ApoI RAATTY 1 cut(s) 266
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 386
BamHI GGATCC 1 cut(s) 540
BauI CACGAG 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 332, 615, 684
BccI CCATC 3 cut(s) 47, 602, 792
BciT130I CCWGG 1 cut(s) 677
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 2 cut(s) 174, 195
BfmI CTRYAG 1 cut(s) 698
BisI GCNGC 3 cut(s) 321, 604, 698
BlsI GCNGC 3 cut(s) 322, 605, 699
Bme1390I CCNGG 2 cut(s) 221, 677
Bme18I GGWCC 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 200, 542
BmrFI CCNGG 2 cut(s) 221, 677
BpuMI CCSGG 1 cut(s) 221
BsaAI YACGTR 1 cut(s) 332
BsaBI GATNNNNATC 2 cut(s) 246, 357
BsaHI GRCGYC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 220, 676
BsaWI WCCGGW 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 373, 834
Bse1I ACTGG 3 cut(s) 39, 317, 439
Bse21I CCTNAGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 439
Bse8I GATNNNNATC 2 cut(s) 246, 357
BseBI CCWGG 1 cut(s) 677
BseDI CCNNGG 2 cut(s) 220, 676
BseGI GGATG 1 cut(s) 733
BseJI GATNNNNATC 2 cut(s) 246, 357
BseLI CCNNNNNNNGG 3 cut(s) 29, 373, 834
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 844
BseNI ACTGG 3 cut(s) 39, 317, 439
BseXI GCAGC 3 cut(s) 332, 615, 684
BseYI CCCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 2 cut(s) 220, 544
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 3 cut(s) 29, 373, 834
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 212
Bso31I GGTCTC 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 5 cut(s) 247, 352, 540, 783, 809
BspCNI CTCAG 1 cut(s) 843
BspHI TCATGA 2 cut(s) 127, 361
BspLI GGNNCC 2 cut(s) 200, 542
BspMAI CTGCAG 1 cut(s) 702
BspPI GGATC 4 cut(s) 242, 535, 548, 791
BspQI GCTCTTC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 439
BsrI ACTGG 3 cut(s) 39, 317, 439
BssECI CCNNGG 2 cut(s) 220, 676
BssMI GATC 5 cut(s) 247, 352, 540, 783, 809
BssNI GRCGYC 1 cut(s) 64
BssSI CACGAG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 677
Bst4CI ACNGT 2 cut(s) 203, 505
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 386, 830
BstF5I GGATG 1 cut(s) 733
BstKTI GATC 5 cut(s) 250, 355, 543, 786, 812
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 5 cut(s) 247, 352, 540, 783, 809
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 677
BstNSI RCATGY 1 cut(s) 755
BstSCI CCNGG 2 cut(s) 219, 675
BstSFI CTRYAG 1 cut(s) 698
BstV1I GCAGC 3 cut(s) 332, 615, 684
BstX2I RGATCY 3 cut(s) 247, 540, 783
BstYI RGATCY 3 cut(s) 247, 540, 783
Bsu36I CCTNAGG 1 cut(s) 386
BtgZI GCGATG 1 cut(s) 315
BtrI CACGTC 1 cut(s) 671
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 1 cut(s) 501
CaiI CAGNNNCTG 1 cut(s) 786
CciI TCATGA 2 cut(s) 127, 361
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 547, 789
CviAII CATG 6 cut(s) 50, 128, 295, 362, 517, 752
CviJI RGCY 4 cut(s) 160, 293, 381, 606
CviKI_1 RGCY 4 cut(s) 160, 293, 381, 606
CviQI GTAC 2 cut(s) 547, 789
DdeI CTNAG 2 cut(s) 386, 830
DpnI GATC 5 cut(s) 249, 354, 542, 785, 811
DpnII GATC 5 cut(s) 247, 352, 540, 783, 809
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 2 cut(s) 216, 583
Eco81I CCTNAGG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 675
EcoT22I ATGCAT 1 cut(s) 464
FaeI CATG 6 cut(s) 53, 131, 298, 365, 520, 755
FalI AAGNNNNNCTT 2 cut(s) 833, 865
FaqI GGGAC 1 cut(s) 212
FatI CATG 6 cut(s) 49, 127, 294, 361, 516, 751
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 3 cut(s) 321, 604, 698
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 3 cut(s) 321, 604, 698
FspBI CTAG 2 cut(s) 174, 195
GluI GCNGC 3 cut(s) 321, 604, 698
GsaI CCCAGC 1 cut(s) 349
HapII CCGG 2 cut(s) 220, 544
HgaI GACGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 6 cut(s) 53, 131, 298, 365, 520, 755
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HinfI GANTC 4 cut(s) 113, 188, 482, 616
HpaII CCGG 2 cut(s) 220, 544
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 9, 757
Hpy188I TCNGA 3 cut(s) 24, 510, 809
Hpy188III TCNNGA 7 cut(s) 10, 30, 128, 185, 251, 362, 572
Hpy8I GTNNAC 2 cut(s) 9, 757
Hpy99I CGWCG 1 cut(s) 675
HpyAV CCTTC 3 cut(s) 240, 472, 600
HpyCH4III ACNGT 2 cut(s) 203, 505
HpyCH4IV ACGT 2 cut(s) 331, 670
HpyCH4V TGCA 9 cut(s) 284, 335, 456, 462, 644, 686, 700, 751, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 386, 830
HpySE526I ACGT 2 cut(s) 331, 670
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 6 cut(s) 53, 131, 298, 365, 520, 755
Kzo9I GATC 5 cut(s) 247, 352, 540, 783, 809
LguI GCTCTTC 1 cut(s) 213
Lsp1109I GCAGC 3 cut(s) 332, 615, 684
MaeI CTAG 2 cut(s) 174, 195
MaeII ACGT 2 cut(s) 331, 670
MaeIII GTNAC 1 cut(s) 466
MalI GATC 5 cut(s) 249, 354, 542, 785, 811
MboI GATC 5 cut(s) 247, 352, 540, 783, 809
MboII GAAGA 7 cut(s) 148, 155, 200, 317, 362, 487, 589
MflI RGATCY 3 cut(s) 247, 540, 783
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 4 cut(s) 146, 212, 266, 731
MlyI GAGTC 2 cut(s) 122, 610
MmeI TCCRAC 4 cut(s) 188, 502, 705, 815
MnlI CCTC 6 cut(s) 78, 189, 266, 531, 568, 839
Mph1103I ATGCAT 1 cut(s) 464
MseI TTAA 3 cut(s) 216, 411, 711
MspI CCGG 2 cut(s) 220, 544
MspR9I CCNGG 2 cut(s) 221, 677
MvaI CCWGG 1 cut(s) 677
MwoI GCNNNNNNNGC 1 cut(s) 290
NciI CCSGG 1 cut(s) 221
NdeII GATC 5 cut(s) 247, 352, 540, 783, 809
NlaIII CATG 6 cut(s) 53, 131, 298, 365, 520, 755
NlaIV GGNNCC 2 cut(s) 200, 542
NmuCI GTSAC 1 cut(s) 466
NsiI ATGCAT 1 cut(s) 464
NspI RCATGY 1 cut(s) 755
PagI TCATGA 2 cut(s) 127, 361
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 188, 482
PkrI GCNGC 3 cut(s) 322, 605, 699
PleI GAGTC 2 cut(s) 121, 610
PpsI GAGTC 2 cut(s) 121, 610
Ppu21I YACGTR 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 675
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 2 cut(s) 200, 542
PspPI GGNCC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 702
PstNI CAGNNNCTG 1 cut(s) 786
PsuI RGATCY 3 cut(s) 247, 540, 783
RsaI GTAC 2 cut(s) 548, 790
RsaNI GTAC 2 cut(s) 547, 789
SalI GTCGAC 1 cut(s) 755
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 3 cut(s) 216, 411, 711
SatI GCNGC 3 cut(s) 321, 604, 698
Sau3AI GATC 5 cut(s) 247, 352, 540, 783, 809
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 122, 610
ScrFI CCNGG 2 cut(s) 221, 677
SduI GDGCHC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 698
SinI GGWCC 1 cut(s) 199
Sse9I AATT 4 cut(s) 146, 212, 266, 731
SspMI CTAG 2 cut(s) 174, 195
StyD4I CCNGG 2 cut(s) 219, 675
TaaI ACNGT 2 cut(s) 203, 505
TaiI ACGT 2 cut(s) 334, 673
TaqI TCGA 2 cut(s) 355, 756
TaqII GACCGA 1 cut(s) 381
TasI AATT 4 cut(s) 146, 212, 266, 731
TfiI GAWTC 2 cut(s) 188, 482
Tru1I TTAA 3 cut(s) 216, 411, 711
Tru9I TTAA 3 cut(s) 216, 411, 711
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 3 cut(s) 320, 603, 697
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 6 cut(s) 119, 318, 429, 488, 744, 860
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 755
XmiI GTMKAC 1 cut(s) 756
XspI CTAG 2 cut(s) 174, 195
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.