RLG00000016528

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003206
Physical Location & Seq
Reverse (-)
7354336 .. 7359613
5278 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016528

Sequence Viewer

Length: 1293 bp
ATGCTCAAGTCCCCCAGGGACCCGAAAGAGGCCAAACTATTGGTGAGGTTGGAATGTGGGGTTTTGATGGCAATGCTGATGATACAGATGGTGGTGTTGATGTTGAGCTGTGCAGTGCAGAGCTGCTGGGTGAGAGAGTATGAGGGGTTGGAAGCCGAGAGAGAGGCCATGACAAAGAAGAGGAGTCAGCGCATTGCCAAGGTTCAAGAGGAGTCCATGGCCAATGCTGAAAAAATTGCAGAGATTAAGACTAAAGAGTTTGATGAGAAGATGAAGAACAAGTATGGACAGAGGAGCCACCGCTGCGCTCTCTCTGAGACCCCCAAATCACCAAACCCATTGCGATTCCAATCCTTTATCGTCGCTGCACAATCGCATCTCCGAATTGGCAGGGATAAAACAAGAGTTTCACATCCTAAGAATCATTGTCTCCATCCTTTTCCGAAACCTGGACTGGTGAGATTTTCCCATGATGGAACAAGGCGTCCTCAAAAGTTTGACAGGACTGATTTCGTTTGGTCTATGAAAATGGAGTCAAAGTTTTCTCATGACAGTAAGATTGAAGAATTGTCAGTAGAGCTTCCAACACCACCTAGTCCTCATCTTGATTCGTCTAGGGACCGTGCGCTTCAATTTAACCGGGGGCAACCTTCAGGTAAAGATTTAGATCCTGACAATGTGTTTGAATTTGGAGGATATATTGCACGAGAAGCCATGTGCGATGAAGAATACTGGACAGCAGCATATTTACGTGCAGAAACTCGCTGGGAAGATCGAAATCATGACCGATATGTTGAAAGCCACCTAAGGAAATATACAGAGCAGGAGTTTAATGAAATCAAAAGGCGAAGCAATGTCCAGTTTGGGAAAAAATGCAAATGCATTGTGACGATGAAGAAGGATTCAAAGAACGTGAAACGCACTGTTCTGAAAAGCATGGTTGGAACACTTGATTTGAGGATCCGGTACTTGTTGAATGGAGAGACCTTTCCAGAGGAACAAGTAAAACCTTCCATCTTCAGCAGCTTCTCAATGACTCGCTCAAATAGATATGGTTATATTGCAAACTTGTGTGTTATCAAACCAGCACGTCGCCAGGGTGTTGCAAGAAATATGCTGCAGTTTGCTATTAAACAAGCAAAGTTGGATGAATTAGAACGGGTATATGTGCATGTTGACAGAAAGAACAAAAATGCACAGGATCTGTACGAAAAGATGGGATTTCAGATCATTGAAAGCACGAACCCTCAGTTGGAAAAAGATGAACTTTATTTGCTTTGTTTGAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10

Protein Analysis

431

Amino Acids

50.24

Weight (kDa)

9.4

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_10 PF13673 340 - 413 3.3e-10 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 342 - 408 4.7e-13 Acetyltransferase (GNAT) family
FR47 PF08445 349 - 413 7.7e-07 FR47-like protein
Acetyltransf_7 PF13508 351 - 409 3.6e-09 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 301
AclWI GGATC 4 cut(s) 662, 955, 968, 1209
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 2 cut(s) 636, 1003
AcyI GRCGYC 1 cut(s) 484
AfaI GTAC 2 cut(s) 968, 1208
AfiI CCNNNNNNNGG 3 cut(s) 28, 449, 1252
AgsI TTSAA 9 cut(s) 206, 563, 632, 686, 797, 906, 976, 1235, 1285
AjiI CACGTC 1 cut(s) 1091
AjnI CCWGG 3 cut(s) 14, 448, 1095
AjuI GAANNNNNNNTTGG 2 cut(s) 1235, 1267
AloI GAACNNNNNNTCC 2 cut(s) 469, 501
AluBI AGCT 4 cut(s) 108, 123, 580, 1026
AluI AGCT 4 cut(s) 108, 123, 580, 1026
Alw26I GTCTC 3 cut(s) 311, 434, 977
AlwI GGATC 4 cut(s) 662, 955, 968, 1209
AlwNI CAGNNNCTG 1 cut(s) 1204
AoxI GGCC 3 cut(s) 30, 165, 219
ApeKI GCWGC 6 cut(s) 123, 303, 365, 740, 1023, 1117
ApoI RAATTY 1 cut(s) 686
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AspLEI GCGC 3 cut(s) 192, 308, 628
AspS9I GGNCC 2 cut(s) 19, 619
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 4 cut(s) 55, 142, 321, 469
AvaII GGWCC 2 cut(s) 19, 619
AxyI CCTNAGG 1 cut(s) 806
BalI TGGCCA 1 cut(s) 221
BamHI GGATCC 1 cut(s) 960
BauI CACGAG 1 cut(s) 705
BbvI GCAGC 6 cut(s) 110, 290, 352, 752, 1035, 1104
BccI CCATC 6 cut(s) 61, 82, 441, 467, 1022, 1210
BciT130I CCWGG 3 cut(s) 16, 450, 1097
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 3 cut(s) 311, 434, 977
BfaI CTAG 3 cut(s) 594, 615, 1291
BfmI CTRYAG 1 cut(s) 1118
BglII AGATCT 1 cut(s) 1287
BisI GCNGC 6 cut(s) 124, 304, 366, 741, 1024, 1118
BlsI GCNGC 6 cut(s) 125, 305, 367, 742, 1025, 1119
Bme1390I CCNGG 4 cut(s) 16, 450, 641, 1097
Bme18I GGWCC 2 cut(s) 19, 619
BmgBI CACGTC 1 cut(s) 1091
BmgT120I GGNCC 2 cut(s) 19, 619
BmiI GGNNCC 5 cut(s) 20, 21, 296, 620, 962
BmrFI CCNGG 4 cut(s) 16, 450, 641, 1097
BmsI GCATC 1 cut(s) 385
BpuMI CCSGG 1 cut(s) 641
BsaAI YACGTR 1 cut(s) 752
BsaBI GATNNNNATC 3 cut(s) 349, 666, 777
BsaHI GRCGYC 1 cut(s) 484
BsaI GGTCTC 2 cut(s) 311, 977
BsaJI CCNNGG 6 cut(s) 14, 15, 198, 216, 640, 1096
BsaWI WCCGGW 1 cut(s) 963
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 449, 1252
Bse1I ACTGG 3 cut(s) 459, 737, 859
Bse21I CCTNAGG 1 cut(s) 806
Bse3DI GCAATG 4 cut(s) 78, 192, 338, 859
Bse8I GATNNNNATC 3 cut(s) 349, 666, 777
BseBI CCWGG 3 cut(s) 16, 450, 1097
BseDI CCNNGG 6 cut(s) 14, 15, 198, 216, 640, 1096
BseGI GGATG 3 cut(s) 412, 433, 1153
BseJI GATNNNNATC 3 cut(s) 349, 666, 777
BseLI CCNNNNNNNGG 3 cut(s) 28, 449, 1252
BseMI GCAATG 4 cut(s) 78, 192, 338, 859
BseMII CTCAG 2 cut(s) 306, 1262
BseNI ACTGG 3 cut(s) 459, 737, 859
BseRI GAGGAG 3 cut(s) 196, 224, 307
BseXI GCAGC 6 cut(s) 110, 290, 352, 752, 1035, 1104
BseYI CCCAGC 2 cut(s) 126, 765
BsgI GTGCAG 4 cut(s) 132, 137, 351, 774
BshFI GGCC 3 cut(s) 32, 167, 221
BsiSI CCGG 2 cut(s) 640, 964
BslFI GGGAC 2 cut(s) 32, 632
BslI CCNNNNNNNGG 3 cut(s) 28, 449, 1252
BsmAI GTCTC 3 cut(s) 311, 434, 977
BsmFI GGGAC 2 cut(s) 32, 632
BsnI GGCC 3 cut(s) 32, 167, 221
Bso31I GGTCTC 2 cut(s) 311, 977
Bsp143I GATC 6 cut(s) 667, 772, 960, 1201, 1227, 1287
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 301
BspANI GGCC 3 cut(s) 32, 167, 221
BspCNI CTCAG 2 cut(s) 307, 1261
BspHI TCATGA 2 cut(s) 547, 781
BspLI GGNNCC 5 cut(s) 20, 21, 296, 620, 962
BspMAI CTGCAG 1 cut(s) 1122
BspPI GGATC 4 cut(s) 662, 955, 968, 1209
BspTNI GGTCTC 2 cut(s) 311, 977
BsrDI GCAATG 4 cut(s) 78, 192, 338, 859
BsrI ACTGG 3 cut(s) 459, 737, 859
BssECI CCNNGG 6 cut(s) 14, 15, 198, 216, 640, 1096
BssMI GATC 6 cut(s) 667, 772, 960, 1201, 1227, 1287
BssNI GRCGYC 1 cut(s) 484
BssSI CACGAG 1 cut(s) 705
BssT1I CCWWGG 2 cut(s) 198, 216
Bst2BI CACGAG 1 cut(s) 705
Bst2UI CCWGG 3 cut(s) 16, 450, 1097
Bst4CI ACNGT 3 cut(s) 554, 623, 925
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 484
BstBAI YACGTR 1 cut(s) 752
BstDEI CTNAG 4 cut(s) 315, 417, 806, 1248
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 3 cut(s) 412, 433, 1153
BstHHI GCGC 3 cut(s) 192, 308, 628
BstKTI GATC 6 cut(s) 670, 775, 963, 1204, 1230, 1290
BstMAI GTCTC 3 cut(s) 311, 434, 977
BstMBI GATC 6 cut(s) 667, 772, 960, 1201, 1227, 1287
BstMWI GCNNNNNNNGC 2 cut(s) 303, 710
BstNI CCWGG 3 cut(s) 16, 450, 1097
BstNSI RCATGY 1 cut(s) 1175
BstSCI CCNGG 4 cut(s) 14, 448, 639, 1095
BstSFI CTRYAG 1 cut(s) 1118
BstV1I GCAGC 6 cut(s) 110, 290, 352, 752, 1035, 1104
BstX2I RGATCY 4 cut(s) 667, 960, 1201, 1287
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 4 cut(s) 667, 960, 1201, 1287
Bsu36I CCTNAGG 1 cut(s) 806
BsuRI GGCC 3 cut(s) 32, 167, 221
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 735
BtrI CACGTC 1 cut(s) 1091
BtsCI GGATG 3 cut(s) 412, 433, 1153
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 921
CaiI CAGNNNCTG 1 cut(s) 1204
CciI TCATGA 2 cut(s) 547, 781
CfoI GCGC 3 cut(s) 192, 308, 628
Cfr13I GGNCC 2 cut(s) 19, 619
CseI GACGC 1 cut(s) 473
Csp6I GTAC 2 cut(s) 967, 1207
CviAII CATG 8 cut(s) 169, 217, 470, 548, 715, 782, 937, 1172
CviQI GTAC 2 cut(s) 967, 1207
DdeI CTNAG 4 cut(s) 315, 417, 806, 1248
DpnI GATC 6 cut(s) 669, 774, 962, 1203, 1229, 1289
DpnII GATC 6 cut(s) 667, 772, 960, 1201, 1227, 1287
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 198, 216
Eco31I GGTCTC 2 cut(s) 311, 977
Eco47I GGWCC 2 cut(s) 19, 619
Eco57I CTGAAG 2 cut(s) 636, 1003
Eco81I CCTNAGG 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 3 cut(s) 14, 448, 1095
EcoT14I CCWWGG 2 cut(s) 198, 216
EcoT22I ATGCAT 1 cut(s) 884
ErhI CCWWGG 2 cut(s) 198, 216
FaeI CATG 8 cut(s) 172, 220, 473, 551, 718, 785, 940, 1175
FalI AAGNNNNNCTT 2 cut(s) 1251, 1283
FaqI GGGAC 2 cut(s) 32, 632
FatI CATG 8 cut(s) 168, 216, 469, 547, 714, 781, 936, 1171
Fnu4HI GCNGC 6 cut(s) 124, 304, 366, 741, 1024, 1118
FokI GGATG 3 cut(s) 399, 420, 1160
Fsp4HI GCNGC 6 cut(s) 124, 304, 366, 741, 1024, 1118
FspBI CTAG 3 cut(s) 594, 615, 1291
GlaI GCGC 3 cut(s) 191, 307, 627
GluI GCNGC 6 cut(s) 124, 304, 366, 741, 1024, 1118
GsaI CCCAGC 2 cut(s) 130, 769
HaeIII GGCC 3 cut(s) 32, 167, 221
HapII CCGG 2 cut(s) 640, 964
HgaI GACGC 1 cut(s) 473
HhaI GCGC 3 cut(s) 192, 308, 628
Hin1I GRCGYC 1 cut(s) 484
Hin1II CATG 8 cut(s) 172, 220, 473, 551, 718, 785, 940, 1175
Hin6I GCGC 3 cut(s) 190, 306, 626
HinP1I GCGC 3 cut(s) 190, 306, 626
HincII GTYRAC 1 cut(s) 1177
HindII GTYRAC 1 cut(s) 1177
HinfI GANTC 8 cut(s) 184, 212, 345, 421, 533, 608, 902, 1036
HpaII CCGG 2 cut(s) 640, 964
HphI GGTGA 4 cut(s) 55, 142, 321, 469
Hpy166II GTNNAC 1 cut(s) 1177
Hpy188I TCNGA 5 cut(s) 316, 383, 444, 930, 1227
Hpy188III TCNNGA 6 cut(s) 206, 548, 605, 671, 782, 992
Hpy8I GTNNAC 1 cut(s) 1177
Hpy99I CGWCG 2 cut(s) 365, 1095
HpyAV CCTTC 3 cut(s) 660, 892, 1020
HpyCH4III ACNGT 3 cut(s) 554, 623, 925
HpyCH4IV ACGT 3 cut(s) 751, 912, 1090
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 710
HpyF3I CTNAG 4 cut(s) 315, 417, 806, 1248
HpySE526I ACGT 3 cut(s) 751, 912, 1090
Hsp92I GRCGYC 1 cut(s) 484
Hsp92II CATG 8 cut(s) 172, 220, 473, 551, 718, 785, 940, 1175
HspAI GCGC 3 cut(s) 190, 306, 626
KflI GGGWCCC 1 cut(s) 19
Kzo9I GATC 6 cut(s) 667, 772, 960, 1201, 1227, 1287
LmnI GCTCC 1 cut(s) 294
Lsp1109I GCAGC 6 cut(s) 110, 290, 352, 752, 1035, 1104
LweI GCATC 1 cut(s) 385
MaeI CTAG 3 cut(s) 594, 615, 1291
MaeII ACGT 3 cut(s) 751, 912, 1090
MaeIII GTNAC 1 cut(s) 886
MalI GATC 6 cut(s) 669, 774, 962, 1203, 1229, 1289
MboI GATC 6 cut(s) 667, 772, 960, 1201, 1227, 1287
MboII GAAGA 8 cut(s) 190, 280, 286, 575, 737, 782, 907, 1009
MflI RGATCY 4 cut(s) 667, 960, 1201, 1287
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 6 cut(s) 234, 384, 566, 632, 686, 1151
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 4 cut(s) 193, 221, 542, 1030
MmeI TCCRAC 6 cut(s) 30, 129, 608, 922, 1125, 1233
Mox20I TGGCCA 1 cut(s) 221
Mph1103I ATGCAT 1 cut(s) 884
MscI TGGCCA 1 cut(s) 221
MseI TTAA 4 cut(s) 246, 636, 831, 1131
Msp20I TGGCCA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 303
MspI CCGG 2 cut(s) 640, 964
MspR9I CCNGG 4 cut(s) 16, 450, 641, 1097
MvaI CCWGG 3 cut(s) 16, 450, 1097
MwoI GCNNNNNNNGC 2 cut(s) 303, 710
NciI CCSGG 1 cut(s) 641
NcoI CCATGG 1 cut(s) 216
NdeII GATC 6 cut(s) 667, 772, 960, 1201, 1227, 1287
NlaIII CATG 8 cut(s) 172, 220, 473, 551, 718, 785, 940, 1175
NlaIV GGNNCC 5 cut(s) 20, 21, 296, 620, 962
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 886
NsiI ATGCAT 1 cut(s) 884
NspI RCATGY 1 cut(s) 1175
PagI TCATGA 2 cut(s) 547, 781
PasI CCCWGGG 1 cut(s) 15
PfeI GAWTC 4 cut(s) 345, 421, 608, 902
PkrI GCNGC 6 cut(s) 125, 305, 367, 742, 1025, 1119
PleI GAGTC 4 cut(s) 192, 220, 541, 1030
PpsI GAGTC 4 cut(s) 192, 220, 541, 1030
Ppu21I YACGTR 1 cut(s) 752
PpuMI RGGWCCY 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 3 cut(s) 14, 448, 1095
PspFI CCCAGC 2 cut(s) 126, 765
PspGI CCWGG 3 cut(s) 14, 448, 1095
PspN4I GGNNCC 5 cut(s) 20, 21, 296, 620, 962
PspPI GGNCC 2 cut(s) 19, 619
PspPPI RGGWCCY 1 cut(s) 19
PstI CTGCAG 1 cut(s) 1122
PstNI CAGNNNCTG 1 cut(s) 1204
PsuI RGATCY 4 cut(s) 667, 960, 1201, 1287
RsaI GTAC 2 cut(s) 968, 1208
RsaNI GTAC 2 cut(s) 967, 1207
SaqAI TTAA 4 cut(s) 246, 636, 831, 1131
SatI GCNGC 6 cut(s) 124, 304, 366, 741, 1024, 1118
Sau3AI GATC 6 cut(s) 667, 772, 960, 1201, 1227, 1287
Sau96I GGNCC 2 cut(s) 19, 619
SchI GAGTC 4 cut(s) 193, 221, 542, 1030
ScrFI CCNGG 4 cut(s) 16, 450, 641, 1097
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 1118
SinI GGWCC 2 cut(s) 19, 619
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 6 cut(s) 234, 384, 566, 632, 686, 1151
SsiI CCGC 1 cut(s) 301
SspMI CTAG 3 cut(s) 594, 615, 1291
StyD4I CCNGG 4 cut(s) 14, 448, 639, 1095
StyI CCWWGG 2 cut(s) 198, 216
TaaI ACNGT 3 cut(s) 554, 623, 925
TaiI ACGT 3 cut(s) 754, 915, 1093
TaqI TCGA 1 cut(s) 775
TaqII GACCGA 1 cut(s) 801
TasI AATT 6 cut(s) 234, 384, 566, 632, 686, 1151
TfiI GAWTC 4 cut(s) 345, 421, 608, 902
Tru1I TTAA 4 cut(s) 246, 636, 831, 1131
Tru9I TTAA 4 cut(s) 246, 636, 831, 1131
TscAI CASTG 2 cut(s) 120, 928
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 6 cut(s) 123, 303, 365, 740, 1023, 1117
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 7 cut(s) 287, 539, 738, 849, 908, 1164, 1278
TspRI CASTG 2 cut(s) 120, 928
VpaK11BI GGWCC 2 cut(s) 19, 619
XapI RAATTY 1 cut(s) 686
XceI RCATGY 1 cut(s) 1175
XspI CTAG 3 cut(s) 594, 615, 1291
Zsp2I ATGCAT 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.