Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003206

Physical Location & Seq

Genomic Coordinates Reverse (-)

5064364 .. 5066564

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTGACGATTTCAATTGACAAGCCTGTGCTGTTGAGATTTTCCCATGTCAAATGCAGAAGTCATCAAAAGTTTCTCAGGATCAATGCCACTTGGAAAAGGGATTCAAATTCCTCTCATCCAAGGAAGATGGAAGAACTTTCAGTAGAGCTTCCAACACAAACTATTCCTCACTGTGAACCATCAAAGCATCCTGATCTGCAATTTGACCGGCTGCAGCCATCAGATGAAGATTTAGATCAAGAGCAAAAGTTTGAATTTGGACAATTTGTTGCACGACAGGCCACACTGGATGAAGAATACTGGACAGCAGCATGGCTACGTGCAGAAAGTCACTGGGAGGAGCGAAAAAATGACCGATTTGCTGAAAGTAACAAAAGGAAATTTACAGATCGGGCATTCACTGCTATAAAAGGACGGGCAAAGGGGCAGAATGGGCAGATATGCACATGCATTGTTACGGTGAAGAAGGACACAAAGAATGTGAAACGCACTGTTGTGAAAAGTGTGGTTGGAACACTTGATTTGAGCATTCGGTACTTGTTGGATGGAGAGACCTTTCCAGGGGAACGGGTAAAAGCTCCTCTCTTTTGCAGTACCAACAGGACACAATCAAGTAAATATGGTTATATTTCAAACTTATGTGTGGCCAAAGCAGCACGACGACAGGGTATTGCAAGCAATATGCTACAGTTTGCTATTAGATCCGCAATGTTAAATGCTAATGTGGAACAGATATATGTGCATGTGGATAGAAAGAACAAACCCGCCCAGGAACTGTACCGAAAGATGGGCTTTGAGATCATCGAAATGGCGAACTCTCAATTGTCAGAGGAGCAGACTTACTTGCTTTGTTTCAAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

289

Amino Acids

33.32

Weight (kDa)

9.31

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06025 AT2G06025 AT2G06025 AT2G06025 AT2G06025 AT2G06025 AT2G06025
fragaria_vesca	FvH4_1g08620 FvH4_1g08620 FvH4_1g08620 FvH4_1g08620 FvH4_1g08620 FvH4_1g08620
malus_domestica	MD02G1091000.v1.1 MD15G1217100.v1.1
prunus_persica	Prupe.7G199400_v2.0.a1 Prupe.7G199400_v2.0.a1 Prupe.7G199400_v2.0.a1
pyrus_communis	pycom01g07710 pycom02g07250 pycom15g19270
rosa_chinensis	RchiOBHm_Chr2g0094881
rosa_laevigata	RLG00000016528
rosa_multiflora	Rmu_sc0006611.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146800
rosa_rugosa	Rorug02G0048500 Rorug02G0048600 Rorug02G0048600 Rorug02G0048600 Rorug02G0048600
rosa_samantha	Rh2AG095100 Rh2BG096000 Rh2BG096100 Rh2CG097900 Rh2CG098000 Rh2DG094700
rosa_wichuraiana	Rw2G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	708, 768
AclWI	GGATC	2 cut(s)	89, 699
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	3 cut(s)	109, 257, 383
AfaI	GTAC	3 cut(s)	539, 598, 782
AfiI	CCNNNNNNNGG	2 cut(s)	564, 790
AgsI	TTSAA	5 cut(s)	15, 108, 257, 636, 859
AjnI	CCWGG	2 cut(s)	562, 771
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	2 cut(s)	151, 581
AluI	AGCT	2 cut(s)	151, 581
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	2 cut(s)	89, 699
AlwNI	CAGNNNCTG	1 cut(s)	778
AoxI	GGCC	2 cut(s)	282, 648
ApeKI	GCWGC	4 cut(s)	214, 217, 311, 656
ApoI	RAATTY	3 cut(s)	109, 257, 383
AsuHPI	GGTGA	1 cut(s)	475
BalI	TGGCCA	1 cut(s)	650
BbvI	GCAGC	4 cut(s)	201, 229, 323, 668
BccI	CCATC	5 cut(s)	124, 190, 229, 542, 784
BciT130I	CCWGG	2 cut(s)	564, 773
BcoDI	GTCTC	1 cut(s)	548
BfmI	CTRYAG	2 cut(s)	215, 689
BisI	GCNGC	4 cut(s)	215, 218, 312, 657
BlsI	GCNGC	4 cut(s)	216, 219, 313, 658
Bme1390I	CCNGG	2 cut(s)	564, 773
BmrFI	CCNGG	2 cut(s)	564, 773
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	122, 563, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	564, 790
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	3 cut(s)	294, 308, 341
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	564, 773
BseDI	CCNNGG	3 cut(s)	122, 563, 771
BseGI	GGATG	4 cut(s)	118, 190, 298, 553
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	564, 790
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	3 cut(s)	294, 308, 341
BseRI	GAGGAG	3 cut(s)	356, 573, 848
BseXI	GCAGC	4 cut(s)	201, 229, 323, 668
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	284, 650
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	564, 790
BsmAI	GTCTC	1 cut(s)	548
BsmI	GAATGC	2 cut(s)	398, 531
BsnI	GGCC	2 cut(s)	284, 650
Bso31I	GGTCTC	1 cut(s)	548
Bsp143I	GATC	6 cut(s)	81, 196, 238, 391, 704, 801
BspACI	CCGC	2 cut(s)	708, 768
BspANI	GGCC	2 cut(s)	284, 650
BspCNI	CTCAG	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	219
BspPI	GGATC	2 cut(s)	89, 699
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	294, 308, 341
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	3 cut(s)	122, 563, 771
BssMI	GATC	6 cut(s)	81, 196, 238, 391, 704, 801
BssT1I	CCWWGG	1 cut(s)	122
Bst2UI	CCWGG	2 cut(s)	564, 773
Bst4CI	ACNGT	5 cut(s)	176, 463, 496, 693, 780
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	4 cut(s)	118, 190, 298, 553
BstKTI	GATC	6 cut(s)	84, 199, 241, 394, 707, 804
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	6 cut(s)	81, 196, 238, 391, 704, 801
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 404, 436, 656
BstNI	CCWGG	2 cut(s)	564, 773
BstNSI	RCATGY	2 cut(s)	453, 749
BstSCI	CCNGG	2 cut(s)	562, 771
BstSFI	CTRYAG	2 cut(s)	215, 689
BstV1I	GCAGC	4 cut(s)	201, 229, 323, 668
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	284, 650
BtsCI	GGATG	4 cut(s)	118, 190, 298, 553
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	5 cut(s)	172, 287, 334, 402, 492
Cac8I	GCNNGC	1 cut(s)	679
CaiI	CAGNNNCTG	1 cut(s)	778
Cfr10I	RCCGGY	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	538, 597, 781
CviAII	CATG	4 cut(s)	47, 315, 450, 746
CviJI	RGCY	9 cut(s)	25, 151, 214, 220, 284, 319, 581, 650, 795
CviKI_1	RGCY	9 cut(s)	25, 151, 214, 220, 284, 319, 581, 650, 795
CviQI	GTAC	3 cut(s)	538, 597, 781
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	6 cut(s)	83, 198, 240, 393, 706, 803
DpnII	GATC	6 cut(s)	81, 196, 238, 391, 704, 801
EaeI	YGGCCR	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	562, 771
EcoT14I	CCWWGG	1 cut(s)	122
EcoT22I	ATGCAT	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	4 cut(s)	50, 318, 453, 749
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FatI	CATG	4 cut(s)	46, 314, 449, 745
FauI	CCCGC	1 cut(s)	775
Fnu4HI	GCNGC	4 cut(s)	215, 218, 312, 657
FokI	GGATG	4 cut(s)	105, 177, 305, 560
Fsp4HI	GCNGC	4 cut(s)	215, 218, 312, 657
GluI	GCNGC	4 cut(s)	215, 218, 312, 657
HaeIII	GGCC	2 cut(s)	284, 650
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	4 cut(s)	50, 318, 453, 749
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	2 cut(s)	6, 179
Hpy188I	TCNGA	2 cut(s)	226, 832
Hpy188III	TCNNGA	4 cut(s)	79, 194, 242, 859
Hpy8I	GTNNAC	2 cut(s)	6, 179
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	5 cut(s)	176, 463, 496, 693, 780
HpyCH4IV	ACGT	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 404, 436, 656
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	4 cut(s)	50, 318, 453, 749
Kzo9I	GATC	6 cut(s)	81, 196, 238, 391, 704, 801
LmnI	GCTCC	3 cut(s)	343, 586, 835
Lsp1109I	GCAGC	4 cut(s)	201, 229, 323, 668
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	3 cut(s)	332, 371, 457
MalI	GATC	6 cut(s)	83, 198, 240, 393, 706, 803
MboI	GATC	6 cut(s)	81, 196, 238, 391, 704, 801
MboII	GAAGA	5 cut(s)	139, 146, 242, 308, 478
MfeI	CAATTG	2 cut(s)	15, 824
MflI	RGATCY	1 cut(s)	704
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	7 cut(s)	15, 109, 203, 257, 266, 383, 824
MluNI	TGGCCA	1 cut(s)	650
MmeI	TCCRAC	3 cut(s)	179, 493, 525
MnlI	CCTC	5 cut(s)	124, 180, 334, 594, 826
Mox20I	TGGCCA	1 cut(s)	650
Mph1103I	ATGCAT	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	1 cut(s)	716
MslI	CAYNNNNRTG	2 cut(s)	497, 809
Msp20I	TGGCCA	1 cut(s)	650
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	564, 773
MunI	CAATTG	2 cut(s)	15, 824
Mva1269I	GAATGC	2 cut(s)	398, 531
MvaI	CCWGG	2 cut(s)	564, 773
MwoI	GCNNNNNNNGC	4 cut(s)	281, 404, 436, 656
NdeII	GATC	6 cut(s)	81, 196, 238, 391, 704, 801
NlaIII	CATG	4 cut(s)	50, 318, 453, 749
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	455
NspI	RCATGY	2 cut(s)	453, 749
OliI	CACNNNNGTG	1 cut(s)	497
PctI	GAATGC	2 cut(s)	398, 531
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	216, 219, 313, 658
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	562, 771
PspGI	CCWGG	2 cut(s)	562, 771
PstI	CTGCAG	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	704
RsaI	GTAC	3 cut(s)	539, 598, 782
RsaNI	GTAC	3 cut(s)	538, 597, 781
RseI	CAYNNNNRTG	2 cut(s)	497, 809
SaqAI	TTAA	1 cut(s)	716
SatI	GCNGC	4 cut(s)	215, 218, 312, 657
Sau3AI	GATC	6 cut(s)	81, 196, 238, 391, 704, 801
ScrFI	CCNGG	2 cut(s)	564, 773
SetI	ASST	5 cut(s)	153, 325, 560, 583, 866
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	2 cut(s)	215, 689
SmiMI	CAYNNNNRTG	2 cut(s)	497, 809
Sse9I	AATT	7 cut(s)	15, 109, 203, 257, 266, 383, 824
SsiI	CCGC	2 cut(s)	708, 768
StyD4I	CCNGG	2 cut(s)	562, 771
StyI	CCWWGG	1 cut(s)	122
TaaI	ACNGT	5 cut(s)	176, 463, 496, 693, 780
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	807
TaqII	GACCGA	1 cut(s)	372
TasI	AATT	7 cut(s)	15, 109, 203, 257, 266, 383, 824
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	716
Tru9I	TTAA	1 cut(s)	716
TscAI	CASTG	5 cut(s)	179, 294, 341, 409, 499
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	4 cut(s)	214, 217, 311, 656
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	2 cut(s)	243, 309
TspRI	CASTG	5 cut(s)	179, 294, 341, 409, 499
XapI	RAATTY	3 cut(s)	109, 257, 383
XceI	RCATGY	2 cut(s)	453, 749
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.