Rw2G007150

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003206
Physical Location & Seq
Reverse (-)
6927276 .. 6930383
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G007150.1

Sequence Viewer

Length: 948 bp
ATGTCCACTGAAGTTTCTAAATTAAAAGCTGTAAGAAACAGTTCTTATTCTGTCATAGTCGAGTCTGGAGGAAGAACTTCTATGATGTTCACAATTTCAGTTCCGAAACCTGGACTGGTGAGATTTTCCCATGATGGAACAAGGCATCCTCAAAAGTTTGACAGGACTGATTTCGTTTGGAAAATGGAGTCAAAGTTTTCTCATGACAGGAAGATTGAAGAATTGTCAGTAGAGCTTCCAACACCACCTAGTCCTCATCTTGATTCGTCTAGGGACCGTACTCTTCAATTTAACCGGGGGCAACCTTCAGGTAAAGATTTAGATCCTGACAATGTGTTTGAATTTGGAGGATATATTGCACGAGAAGCCATGTGCGATGAAGAATACTGGACAGCAGCATATTTACGTGCAGAAACTCGCTGGGAAGATCGAAATCATGACCGATATGTTGAAAGCCACCTAAGGAAATATACAGAGCAGGAGTTTAATGAAATCAAAAGGCGAAGCAATGTCCAGTTTGGGAAAAAATGCAGATGCATTGTGACGATGAAGAAGGATTCAAAGAATGTGAAACGCACTGTTCTGAAAAGCATGGTTGGAACACTTGATTTGAGGATCCGGTACTTGTTGAATGGAGAGACCTTTCCAGAGGAACAAGTAAAACCTTCCATCTTCAGCAGCTTCTCAATGACTCGCTCAAATAGATATGGTTATATTGCAAACTTGTGTGTTATCAAACCAGCACGTCGCCAGGGTGTTGCAAGAAATATGCTGCAGTTTGCTATTAAACAAGCAAAGTTGGATGAATTAGAACGGGTATATGTGCATGTTGACAGAAAGAACAAAAACGCACAGGATCTGTACGAAAAGATGGGATTTCAGATCATTGAAAGCACGAACCCTCAGTTGGAAAAAGATGAACTTTATTTGCTTTGTTTGAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10

Protein Analysis

315

Amino Acids

36.85

Weight (kDa)

9.32

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_10 PF13673 225 - 298 1.9e-10 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 226 - 293 2.5e-13 Acetyltransferase (GNAT) family
FR47 PF08445 234 - 298 4.7e-07 FR47-like protein
Acetyltransf_7 PF13508 236 - 294 2.1e-09 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 317, 610, 623, 864
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 3 cut(s) 30, 291, 658
AfaI GTAC 3 cut(s) 280, 623, 863
AfiI CCNNNNNNNGG 2 cut(s) 110, 907
AgsI TTSAA 8 cut(s) 218, 287, 341, 452, 561, 631, 890, 940
AjiI CACGTC 1 cut(s) 746
AjnI CCWGG 2 cut(s) 109, 750
AjuI GAANNNNNNNTTGG 2 cut(s) 890, 922
AloI GAACNNNNNNTCC 2 cut(s) 130, 162
AluBI AGCT 3 cut(s) 29, 235, 681
AluI AGCT 3 cut(s) 29, 235, 681
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 4 cut(s) 317, 610, 623, 864
AlwNI CAGNNNCTG 1 cut(s) 859
ApeKI GCWGC 3 cut(s) 395, 678, 772
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
Asp700I GAANNNNTTC 2 cut(s) 40, 76
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 461
BamHI GGATCC 1 cut(s) 615
BauI CACGAG 1 cut(s) 360
BbvI GCAGC 3 cut(s) 407, 690, 759
BccI CCATC 3 cut(s) 128, 677, 865
BciT130I CCWGG 2 cut(s) 111, 752
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 3 cut(s) 249, 270, 946
BfmI CTRYAG 1 cut(s) 773
BglII AGATCT 1 cut(s) 942
BisI GCNGC 3 cut(s) 396, 679, 773
BlsI GCNGC 3 cut(s) 397, 680, 774
Bme1390I CCNGG 3 cut(s) 111, 296, 752
Bme18I GGWCC 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 275, 617
BmrFI CCNGG 3 cut(s) 111, 296, 752
BmsI GCATC 2 cut(s) 154, 524
BpmI CTGGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 407
BsaBI GATNNNNATC 2 cut(s) 321, 432
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 2 cut(s) 295, 751
BsaWI WCCGGW 1 cut(s) 618
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 907
Bse1I ACTGG 3 cut(s) 120, 392, 514
Bse21I CCTNAGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 514
Bse8I GATNNNNATC 2 cut(s) 321, 432
BseBI CCWGG 2 cut(s) 111, 752
BseDI CCNNGG 2 cut(s) 295, 751
BseGI GGATG 2 cut(s) 145, 808
BseJI GATNNNNATC 2 cut(s) 321, 432
BseLI CCNNNNNNNGG 2 cut(s) 110, 907
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 1 cut(s) 917
BseNI ACTGG 3 cut(s) 120, 392, 514
BseXI GCAGC 3 cut(s) 407, 690, 759
BseYI CCCAGC 1 cut(s) 420
BsgI GTGCAG 1 cut(s) 429
BsiSI CCGG 2 cut(s) 295, 619
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 110, 907
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 632
Bsp143I GATC 6 cut(s) 322, 427, 615, 856, 882, 942
BspCNI CTCAG 1 cut(s) 916
BspHI TCATGA 2 cut(s) 202, 436
BspLI GGNNCC 2 cut(s) 275, 617
BspMAI CTGCAG 1 cut(s) 777
BspPI GGATC 4 cut(s) 317, 610, 623, 864
BspTNI GGTCTC 1 cut(s) 632
BsrDI GCAATG 1 cut(s) 514
BsrI ACTGG 3 cut(s) 120, 392, 514
BssECI CCNNGG 2 cut(s) 295, 751
BssMI GATC 6 cut(s) 322, 427, 615, 856, 882, 942
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 2 cut(s) 111, 752
Bst4CI ACNGT 3 cut(s) 41, 278, 580
Bst6I CTCTTC 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 407
BstDEI CTNAG 2 cut(s) 461, 903
BstF5I GGATG 2 cut(s) 145, 808
BstKTI GATC 6 cut(s) 325, 430, 618, 859, 885, 945
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 6 cut(s) 322, 427, 615, 856, 882, 942
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 2 cut(s) 111, 752
BstNSI RCATGY 1 cut(s) 830
BstSCI CCNGG 3 cut(s) 109, 294, 750
BstSFI CTRYAG 1 cut(s) 773
BstV1I GCAGC 3 cut(s) 407, 690, 759
BstX2I RGATCY 4 cut(s) 322, 615, 856, 942
BstYI RGATCY 4 cut(s) 322, 615, 856, 942
Bsu36I CCTNAGG 1 cut(s) 461
BtgZI GCGATG 1 cut(s) 390
BtrI CACGTC 1 cut(s) 746
BtsCI GGATG 2 cut(s) 145, 808
BtsIMutI CAGTG 2 cut(s) 6, 576
CaiI CAGNNNCTG 1 cut(s) 859
CciI TCATGA 2 cut(s) 202, 436
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 3 cut(s) 279, 622, 862
CviAII CATG 6 cut(s) 131, 203, 370, 437, 592, 827
CviJI RGCY 5 cut(s) 29, 235, 368, 456, 681
CviKI_1 RGCY 5 cut(s) 29, 235, 368, 456, 681
CviQI GTAC 3 cut(s) 279, 622, 862
DdeI CTNAG 2 cut(s) 461, 903
DpnI GATC 6 cut(s) 324, 429, 617, 858, 884, 944
DpnII GATC 6 cut(s) 322, 427, 615, 856, 882, 942
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 632
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 3 cut(s) 30, 291, 658
Eco81I CCTNAGG 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 109, 750
EcoT22I ATGCAT 1 cut(s) 539
FaeI CATG 6 cut(s) 134, 206, 373, 440, 595, 830
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 1 cut(s) 287
FatI CATG 6 cut(s) 130, 202, 369, 436, 591, 826
Fnu4HI GCNGC 3 cut(s) 396, 679, 773
FokI GGATG 2 cut(s) 132, 815
Fsp4HI GCNGC 3 cut(s) 396, 679, 773
FspBI CTAG 3 cut(s) 249, 270, 946
GluI GCNGC 3 cut(s) 396, 679, 773
GsaI CCCAGC 1 cut(s) 424
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 2 cut(s) 295, 619
Hin1II CATG 6 cut(s) 134, 206, 373, 440, 595, 830
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HinfI GANTC 5 cut(s) 62, 188, 263, 557, 691
HpaII CCGG 2 cut(s) 295, 619
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 3 cut(s) 6, 90, 832
Hpy188I TCNGA 3 cut(s) 105, 585, 882
Hpy188III TCNNGA 6 cut(s) 66, 203, 260, 326, 437, 647
Hpy8I GTNNAC 3 cut(s) 6, 90, 832
Hpy99I CGWCG 1 cut(s) 750
HpyAV CCTTC 3 cut(s) 315, 547, 675
HpyCH4III ACNGT 3 cut(s) 41, 278, 580
HpyCH4IV ACGT 2 cut(s) 406, 745
HpyCH4V TGCA 8 cut(s) 359, 410, 531, 537, 719, 761, 775, 826
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 2 cut(s) 461, 903
HpySE526I ACGT 2 cut(s) 406, 745
Hsp92II CATG 6 cut(s) 134, 206, 373, 440, 595, 830
Kzo9I GATC 6 cut(s) 322, 427, 615, 856, 882, 942
Lsp1109I GCAGC 3 cut(s) 407, 690, 759
LweI GCATC 2 cut(s) 154, 524
MaeI CTAG 3 cut(s) 249, 270, 946
MaeII ACGT 2 cut(s) 406, 745
MaeIII GTNAC 1 cut(s) 541
MalI GATC 6 cut(s) 324, 429, 617, 858, 884, 944
MboI GATC 6 cut(s) 322, 427, 615, 856, 882, 942
MboII GAAGA 8 cut(s) 84, 223, 230, 275, 392, 437, 562, 664
MflI RGATCY 4 cut(s) 322, 615, 856, 942
MluCI AATT 6 cut(s) 20, 93, 221, 287, 341, 806
MlyI GAGTC 3 cut(s) 71, 197, 685
MmeI TCCRAC 4 cut(s) 263, 577, 780, 888
MnlI CCTC 7 cut(s) 62, 159, 264, 341, 606, 643, 912
Mph1103I ATGCAT 1 cut(s) 539
MroXI GAANNNNTTC 2 cut(s) 40, 76
MseI TTAA 4 cut(s) 23, 291, 486, 786
MspI CCGG 2 cut(s) 295, 619
MspR9I CCNGG 3 cut(s) 111, 296, 752
MvaI CCWGG 2 cut(s) 111, 752
MwoI GCNNNNNNNGC 1 cut(s) 365
NciI CCSGG 1 cut(s) 296
NdeII GATC 6 cut(s) 322, 427, 615, 856, 882, 942
NlaIII CATG 6 cut(s) 134, 206, 373, 440, 595, 830
NlaIV GGNNCC 2 cut(s) 275, 617
NmuCI GTSAC 1 cut(s) 541
NsiI ATGCAT 1 cut(s) 539
NspI RCATGY 1 cut(s) 830
PagI TCATGA 2 cut(s) 202, 436
PdmI GAANNNNTTC 2 cut(s) 40, 76
PfeI GAWTC 2 cut(s) 263, 557
PkrI GCNGC 3 cut(s) 397, 680, 774
PleI GAGTC 3 cut(s) 70, 196, 685
PpsI GAGTC 3 cut(s) 70, 196, 685
Ppu21I YACGTR 1 cut(s) 407
Psp6I CCWGG 2 cut(s) 109, 750
PspFI CCCAGC 1 cut(s) 420
PspGI CCWGG 2 cut(s) 109, 750
PspN4I GGNNCC 2 cut(s) 275, 617
PspPI GGNCC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 777
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 4 cut(s) 322, 615, 856, 942
RsaI GTAC 3 cut(s) 280, 623, 863
RsaNI GTAC 3 cut(s) 279, 622, 862
SaqAI TTAA 4 cut(s) 23, 291, 486, 786
SatI GCNGC 3 cut(s) 396, 679, 773
Sau3AI GATC 6 cut(s) 322, 427, 615, 856, 882, 942
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 3 cut(s) 71, 197, 685
ScrFI CCNGG 3 cut(s) 111, 296, 752
SfaNI GCATC 2 cut(s) 154, 524
SfcI CTRYAG 1 cut(s) 773
SinI GGWCC 1 cut(s) 274
Sse9I AATT 6 cut(s) 20, 93, 221, 287, 341, 806
SspMI CTAG 3 cut(s) 249, 270, 946
StyD4I CCNGG 3 cut(s) 109, 294, 750
TaaI ACNGT 3 cut(s) 41, 278, 580
TaiI ACGT 2 cut(s) 409, 748
TaqI TCGA 2 cut(s) 60, 430
TaqII GACCGA 1 cut(s) 456
TasI AATT 6 cut(s) 20, 93, 221, 287, 341, 806
TfiI GAWTC 2 cut(s) 263, 557
Tru1I TTAA 4 cut(s) 23, 291, 486, 786
Tru9I TTAA 4 cut(s) 23, 291, 486, 786
TscAI CASTG 2 cut(s) 13, 583
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 3 cut(s) 395, 678, 772
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 5 cut(s) 393, 504, 563, 819, 933
TspRI CASTG 2 cut(s) 13, 583
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 830
XmnI GAANNNNTTC 2 cut(s) 40, 76
XspI CTAG 3 cut(s) 249, 270, 946
Zsp2I ATGCAT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.