Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003206

Physical Location & Seq

Genomic Coordinates Reverse (-)

8679917 .. 8680234

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAAGAGATATCCTTTTTCCCTCTAATTTTTTTTTATATTATTTCCTATGCATGCCATTCCATAATCCTTTGCCCTCTCCTCTCTGTCTGCGCCCACAATCAAATACACTCTCTCCTCTCCTTCTTCTCCCTCTCTCTCCGTGTGGGTCTCTTCTCTCATCCAAGGAAGATGGAACTGTCAGTAGAGCTTCCAACACAGACTATTCCTCACTGTGAACCATCAAAGCATTCTGATCTGCAATTTGACTGCCAGCAACCATCAGATGAAGATTTAGATGAAGAAAAATGTAGGAATTTGGACGGTTGTTTAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

106

Amino Acids

12.06

Weight (kDa)

5.33

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06025 AT2G06025 AT2G06025 AT2G06025 AT2G06025 AT2G06025 AT2G06025
fragaria_vesca	FvH4_1g08620 FvH4_1g08620 FvH4_1g08620 FvH4_1g08620 FvH4_1g08620 FvH4_1g08620
malus_domestica	MD02G1091000.v1.1 MD15G1217100.v1.1
prunus_persica	Prupe.7G199400_v2.0.a1 Prupe.7G199400_v2.0.a1 Prupe.7G199400_v2.0.a1
pyrus_communis	pycom01g07710 pycom02g07250 pycom15g19270
rosa_chinensis	RchiOBHm_Chr2g0094881
rosa_laevigata	RLG00000016528
rosa_multiflora	Rmu_sc0006611.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146800
rosa_rugosa	Rorug02G0048500 Rorug02G0048600 Rorug02G0048600 Rorug02G0048600 Rorug02G0048600
rosa_samantha	Rh2AG095100 Rh2BG096000 Rh2BG096100 Rh2CG097900 Rh2CG098000 Rh2DG094700
rosa_wichuraiana	Rw2G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	295
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	95
BccI	CCATC	3 cut(s)	166, 229, 268
BcoDI	GTCTC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	160
BseRI	GAGGAG	2 cut(s)	71, 107
BsmAI	GTCTC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	229
Bso31I	GGTCTC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	180, 215, 305
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	55, 254
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	55, 254
CfoI	GCGC	1 cut(s)	95
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	1 cut(s)	190
CviKI_1	RGCY	1 cut(s)	190
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	155
Eco32I	GATATC	1 cut(s)	12
EcoRV	GATATC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	57
FaiI	YATR	4 cut(s)	39, 51, 55, 65
FatI	CATG	1 cut(s)	53
FokI	GGATG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	57
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	235, 265, 317
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	3 cut(s)	180, 215, 305
HpyCH4V	TGCA	2 cut(s)	53, 241
Hsp92II	CATG	1 cut(s)	57
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	235
LpnPI	CCDG	1 cut(s)	266
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	5 cut(s)	118, 145, 181, 281, 293
MluCI	AATT	3 cut(s)	27, 242, 295
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	6 cut(s)	33, 87, 92, 128, 143, 219
Mph1103I	ATGCAT	1 cut(s)	55
MseI	TTAA	1 cut(s)	311
Mva1269I	GAATGC	1 cut(s)	229
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	55
NspI	RCATGY	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	57
PctI	GAATGC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	311
Sau3AI	GATC	1 cut(s)	235
SetI	ASST	1 cut(s)	192
SgeI	CNNG	4 cut(s)	66, 155, 177, 265
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	3 cut(s)	27, 242, 295
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	3 cut(s)	180, 215, 305
TasI	AATT	3 cut(s)	27, 242, 295
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	17, 282, 294
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.