Rorug02G0048500

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003206
Physical Location & Seq
Reverse (-)
3734299 .. 3734829
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0048500.1

Sequence Viewer

Length: 531 bp
ATGTTTTATAAGCGGAGTAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACTGCGAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTGCCAATTCATCTGCACCTGCTTCTGCTTCTTCTGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGATCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10

Protein Analysis

176

Amino Acids

19.67

Weight (kDa)

8.83

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 4 - 66 1.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AarI CACCTGC 1 cut(s) 292
Acc36I ACCTGC 2 cut(s) 91, 292
AccIII TCCGGA 1 cut(s) 519
AciI CCGC 1 cut(s) 13
AclWI GGATC 2 cut(s) 119, 361
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 398
AgsI TTSAA 2 cut(s) 151, 374
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 4 cut(s) 61, 124, 481, 506
AluI AGCT 4 cut(s) 61, 124, 481, 506
Alw21I GWGCWC 1 cut(s) 483
AlwI GGATC 2 cut(s) 119, 361
Ama87I CYCGRG 1 cut(s) 186
Aor13HI TCCGGA 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 266, 413
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 231
BanII GRGCYC 2 cut(s) 187, 483
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 483
BccI CCATC 2 cut(s) 325, 431
BfmI CTRYAG 2 cut(s) 33, 93
BfuAI ACCTGC 2 cut(s) 91, 292
BlpI GCTNAGC 1 cut(s) 482
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 86, 524
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 104
Bpu1102I GCTNAGC 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 38, 497
BsaBI GATNNNNATC 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 47
BseAI TCCGGA 1 cut(s) 519
BseGI GGATG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 520
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 398
BsmFI GGGAC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 3 cut(s) 187, 231, 483
Bsp13I TCCGGA 1 cut(s) 519
Bsp143I GATC 6 cut(s) 37, 111, 141, 239, 353, 448
Bsp1720I GCTNAGC 1 cut(s) 482
BspACI CCGC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 495
BspEI TCCGGA 1 cut(s) 519
BspLI GGNNCC 2 cut(s) 86, 524
BspMI ACCTGC 2 cut(s) 91, 292
BspPI GGATC 2 cut(s) 119, 361
BssMI GATC 6 cut(s) 37, 111, 141, 239, 353, 448
Bst4CI ACNGT 2 cut(s) 94, 455
BstDEI CTNAG 1 cut(s) 482
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 6 cut(s) 40, 114, 144, 242, 356, 451
BstMBI GATC 6 cut(s) 37, 111, 141, 239, 353, 448
BstMWI GCNNNNNNNGC 2 cut(s) 299, 492
BstSFI CTRYAG 2 cut(s) 33, 93
BstSLI GKGCMC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 2 cut(s) 111, 353
BstYI RGATCY 2 cut(s) 111, 353
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 526
BveI ACCTGC 2 cut(s) 91, 292
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 133
CviAII CATG 6 cut(s) 224, 232, 364, 394, 398, 421
CviJI RGCY 9 cut(s) 61, 124, 185, 247, 462, 481, 486, 506, 525
CviKI_1 RGCY 9 cut(s) 61, 124, 185, 247, 462, 481, 486, 506, 525
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 482
DpnI GATC 6 cut(s) 39, 113, 143, 241, 355, 450
DpnII GATC 6 cut(s) 37, 111, 141, 239, 353, 448
Ecl136II GAGCTC 1 cut(s) 481
Eco24I GRGCYC 2 cut(s) 187, 483
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 399
EcoT38I GRGCYC 2 cut(s) 187, 483
FaeI CATG 6 cut(s) 227, 235, 367, 397, 401, 424
FaqI GGGAC 1 cut(s) 70
FatI CATG 6 cut(s) 223, 231, 363, 393, 397, 420
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 2 cut(s) 187, 483
GsuI CTGGAG 1 cut(s) 104
HapII CCGG 1 cut(s) 520
Hin1II CATG 6 cut(s) 227, 235, 367, 397, 401, 424
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 25, 48
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 1 cut(s) 520
HphI GGTGA 2 cut(s) 266, 413
Hpy166II GTNNAC 4 cut(s) 24, 175, 210, 322
Hpy188I TCNGA 3 cut(s) 42, 217, 436
Hpy188III TCNNGA 4 cut(s) 151, 172, 188, 520
Hpy8I GTNNAC 4 cut(s) 24, 175, 210, 322
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 2 cut(s) 94, 455
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 235, 281, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 492
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 6 cut(s) 227, 235, 367, 397, 401, 424
Kpn2I TCCGGA 1 cut(s) 519
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 6 cut(s) 37, 111, 141, 239, 353, 448
LmnI GCTCC 2 cut(s) 58, 522
LpnPI CCDG 7 cut(s) 86, 134, 228, 288, 297, 492, 505
MaeII ACGT 1 cut(s) 156
MalI GATC 6 cut(s) 39, 113, 143, 241, 355, 450
MboI GATC 6 cut(s) 37, 111, 141, 239, 353, 448
MboII GAAGA 4 cut(s) 211, 214, 288, 436
MflI RGATCY 2 cut(s) 111, 353
MhlI GDGCHC 3 cut(s) 187, 231, 483
MluCI AATT 1 cut(s) 271
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 6 cut(s) 62, 102, 393, 397, 434, 490
Mph1103I ATGCAT 1 cut(s) 399
MroI TCCGGA 1 cut(s) 519
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 1 cut(s) 520
MwoI GCNNNNNNNGC 2 cut(s) 299, 492
NdeII GATC 6 cut(s) 37, 111, 141, 239, 353, 448
NlaIII CATG 6 cut(s) 227, 235, 367, 397, 401, 424
NlaIV GGNNCC 2 cut(s) 86, 524
NsiI ATGCAT 1 cut(s) 399
OliI CACNNNNGTG 1 cut(s) 456
PaqCI CACCTGC 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 48
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 84
PsiI TTATAA 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 483
Psp5II RGGWCCY 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 86, 524
PspPI GGNCC 1 cut(s) 84
PspPPI RGGWCCY 1 cut(s) 84
PsuI RGATCY 2 cut(s) 111, 353
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 456
SacI GAGCTC 1 cut(s) 483
SaqAI TTAA 1 cut(s) 321
Sau3AI GATC 6 cut(s) 37, 111, 141, 239, 353, 448
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 19
SduI GDGCHC 3 cut(s) 187, 231, 483
SfcI CTRYAG 2 cut(s) 33, 93
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 53, 476
SmoI CTYRAG 2 cut(s) 53, 476
Sse9I AATT 1 cut(s) 271
SsiI CCGC 1 cut(s) 13
SstI GAGCTC 1 cut(s) 483
TaaI ACNGT 2 cut(s) 94, 455
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 271
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TspDTI ATGAA 4 cut(s) 212, 264, 374, 437
VpaK11BI GGWCC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.