MD02G1091000.v1.1

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0003206
Physical Location & Seq
Reverse (-)
7209065 .. 7213147
4083 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1091000.v1.1.491

Sequence Viewer

Length: 867 bp
ATGTTGACGATTTCAATTGACAAGCCTGTGCTGTTGAGATTTTCCCATGTCAAATGTAGAAGTCATCAAAAGTTTCTCAGGATCAATGCCACTTGGAAAAGGGATTCAAAGTCCTCTCATCCAAGGAAGATGGAAGAACTTTCAGTAGAGCTTCCAACACAAACTATTCCTCACTGTGAACCATCAAAGCATCCTGATCTGCAATTTGACCGGCTGCAGCCATCAGATGAAGATTTAGATCAAGAGAAAAAGTTGGAATTTGGACAATTTGTTGCACGAGAAGCCACACTGGATGAAGAATACTGGACAGCAGCATGGCTACGTGCAGAAAGTCACTGGGAGGAGCAAAAAAATGACCGATTTGCTGATAGTAACAAAAGGAAATTTGCAGACCGGGCATTCAATGCTATAAAAAGACGAGCAAAGGGGCAGAATGGGCAGCTATGCACATGCATTGTTACGGTGAAGAAGGACACAAAGAATGTGAAACGCACTGTTGTGAAAAGTGTAGTTGGAACACTTGATTTGAGCATTCGGTACTTGTTGGATGGAGAGACCTTTCCAGGGGAACGGGTAAAAGCTCCTCTCTTTTGCAGTACCAACAGGACACAGTCAAGTAGATATGGTTATATTTCAAACTTATGTGTGGCCAAAGCAGCACGACGACAGGGTATTGCAAGCAATATGCTACAATTTGCTATTAGATCCGCAATTTTAAATGCTAATGTGGAACAGATATATGTGCATGTGGATAGAAAGAACAAACCCGCCCAGGAACTGTACCGAAAGATGGGCTTTGAGATCATTGAAAGGGCGAACTCTCAATTGTCAGAGGAGCAGACTTACTTGCTTTGTTTCAAGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10

Protein Analysis

289

Amino Acids

33.37

Weight (kDa)

9.43

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 170 - 266 1.5e-12 Acetyltransferase (GNAT) family
FR47 PF08445 206 - 270 8.4e-09 FR47-like protein
Acetyltransf_10 PF13673 206 - 270 1.4e-08 Acetyltransferase (GNAT) domain
Acetyltransf_7 PF13508 207 - 267 1.3e-10 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 708, 768
AclWI GGATC 2 cut(s) 89, 699
AcoI YGGCCR 1 cut(s) 648
AcsI RAATTY 2 cut(s) 257, 383
AfaI GTAC 3 cut(s) 539, 598, 782
AfiI CCNNNNNNNGG 2 cut(s) 564, 790
AgsI TTSAA 6 cut(s) 15, 108, 403, 636, 809, 859
AjnI CCWGG 2 cut(s) 562, 771
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 3 cut(s) 151, 442, 581
AluI AGCT 3 cut(s) 151, 442, 581
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 2 cut(s) 89, 699
AlwNI CAGNNNCTG 1 cut(s) 778
AoxI GGCC 1 cut(s) 648
ApeKI GCWGC 5 cut(s) 214, 217, 311, 439, 656
ApoI RAATTY 2 cut(s) 257, 383
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 475
BalI TGGCCA 1 cut(s) 650
BauI CACGAG 1 cut(s) 276
BbvI GCAGC 5 cut(s) 201, 229, 323, 451, 668
BccI CCATC 5 cut(s) 124, 190, 229, 542, 784
BciT130I CCWGG 2 cut(s) 564, 773
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 215
BisI GCNGC 5 cut(s) 215, 218, 312, 440, 657
BlsI GCNGC 5 cut(s) 216, 219, 313, 441, 658
Bme1390I CCNGG 3 cut(s) 395, 564, 773
BmrFI CCNGG 3 cut(s) 395, 564, 773
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 395
BsaAI YACGTR 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 122, 563, 771
Bsc4I CCNNNNNNNGG 2 cut(s) 564, 790
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 3 cut(s) 294, 308, 341
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 2 cut(s) 564, 773
BseDI CCNNGG 3 cut(s) 122, 563, 771
BseGI GGATG 4 cut(s) 118, 190, 298, 553
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 564, 790
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 3 cut(s) 294, 308, 341
BseRI GAGGAG 3 cut(s) 356, 573, 848
BseXI GCAGC 5 cut(s) 201, 229, 323, 451, 668
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 1 cut(s) 650
BsiSI CCGG 2 cut(s) 211, 394
BslI CCNNNNNNNGG 2 cut(s) 564, 790
BsmAI GTCTC 1 cut(s) 548
BsmI GAATGC 2 cut(s) 398, 531
BsnI GGCC 1 cut(s) 650
Bso31I GGTCTC 1 cut(s) 548
Bsp143I GATC 5 cut(s) 81, 196, 238, 704, 801
BspACI CCGC 2 cut(s) 708, 768
BspANI GGCC 1 cut(s) 650
BspCNI CTCAG 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 219
BspPI GGATC 2 cut(s) 89, 699
BspTNI GGTCTC 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 3 cut(s) 294, 308, 341
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 122, 563, 771
BssMI GATC 5 cut(s) 81, 196, 238, 704, 801
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 564, 773
Bst4CI ACNGT 5 cut(s) 176, 463, 496, 612, 780
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 679
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 4 cut(s) 118, 190, 298, 553
BstKTI GATC 5 cut(s) 84, 199, 241, 707, 804
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 5 cut(s) 81, 196, 238, 704, 801
BstMWI GCNNNNNNNGC 5 cut(s) 281, 395, 404, 436, 656
BstNI CCWGG 2 cut(s) 564, 773
BstNSI RCATGY 2 cut(s) 453, 749
BstSCI CCNGG 3 cut(s) 393, 562, 771
BstSFI CTRYAG 1 cut(s) 215
BstV1I GCAGC 5 cut(s) 201, 229, 323, 451, 668
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
BsuRI GGCC 1 cut(s) 650
BtsCI GGATG 4 cut(s) 118, 190, 298, 553
BtsIMutI CAGTG 4 cut(s) 172, 287, 334, 492
Cac8I GCNNGC 1 cut(s) 679
CaiI CAGNNNCTG 1 cut(s) 778
Cfr10I RCCGGY 1 cut(s) 210
Csp6I GTAC 3 cut(s) 538, 597, 781
CviAII CATG 4 cut(s) 47, 315, 450, 746
CviQI GTAC 3 cut(s) 538, 597, 781
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 83, 198, 240, 706, 803
DpnII GATC 5 cut(s) 81, 196, 238, 704, 801
DraI TTTAAA 1 cut(s) 717
EaeI YGGCCR 1 cut(s) 648
Eco130I CCWWGG 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 562, 771
EcoT14I CCWWGG 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 4 cut(s) 50, 318, 453, 749
FalI AAGNNNNNCTT 2 cut(s) 779, 811
FatI CATG 4 cut(s) 46, 314, 449, 745
FauI CCCGC 1 cut(s) 775
Fnu4HI GCNGC 5 cut(s) 215, 218, 312, 440, 657
FokI GGATG 4 cut(s) 105, 177, 305, 560
Fsp4HI GCNGC 5 cut(s) 215, 218, 312, 440, 657
GluI GCNGC 5 cut(s) 215, 218, 312, 440, 657
HaeIII GGCC 1 cut(s) 650
HapII CCGG 2 cut(s) 211, 394
Hin1II CATG 4 cut(s) 50, 318, 453, 749
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 211, 394
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 2 cut(s) 6, 179
Hpy188I TCNGA 2 cut(s) 226, 832
Hpy188III TCNNGA 4 cut(s) 79, 194, 242, 859
Hpy8I GTNNAC 2 cut(s) 6, 179
Hpy99I CGWCG 1 cut(s) 666
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 5 cut(s) 176, 463, 496, 612, 780
HpyCH4IV ACGT 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 395, 404, 436, 656
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 4 cut(s) 50, 318, 453, 749
Kzo9I GATC 5 cut(s) 81, 196, 238, 704, 801
LmnI GCTCC 3 cut(s) 343, 586, 835
Lsp1109I GCAGC 5 cut(s) 201, 229, 323, 451, 668
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 3 cut(s) 332, 371, 457
MalI GATC 5 cut(s) 83, 198, 240, 706, 803
MboI GATC 5 cut(s) 81, 196, 238, 704, 801
MboII GAAGA 5 cut(s) 139, 146, 242, 308, 478
MfeI CAATTG 2 cut(s) 15, 824
MflI RGATCY 1 cut(s) 704
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 8 cut(s) 15, 203, 257, 266, 383, 692, 711, 824
MluNI TGGCCA 1 cut(s) 650
MmeI TCCRAC 4 cut(s) 179, 234, 493, 525
MnlI CCTC 5 cut(s) 124, 180, 334, 594, 826
Mox20I TGGCCA 1 cut(s) 650
Mph1103I ATGCAT 1 cut(s) 455
MscI TGGCCA 1 cut(s) 650
MseI TTAA 1 cut(s) 716
MslI CAYNNNNRTG 1 cut(s) 497
Msp20I TGGCCA 1 cut(s) 650
MspI CCGG 2 cut(s) 211, 394
MspR9I CCNGG 3 cut(s) 395, 564, 773
MunI CAATTG 2 cut(s) 15, 824
Mva1269I GAATGC 2 cut(s) 398, 531
MvaI CCWGG 2 cut(s) 564, 773
MwoI GCNNNNNNNGC 5 cut(s) 281, 395, 404, 436, 656
NciI CCSGG 1 cut(s) 395
NdeII GATC 5 cut(s) 81, 196, 238, 704, 801
NlaIII CATG 4 cut(s) 50, 318, 453, 749
NmuCI GTSAC 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 455
NspI RCATGY 2 cut(s) 453, 749
OliI CACNNNNGTG 1 cut(s) 497
PctI GAATGC 2 cut(s) 398, 531
PfeI GAWTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 610
PkrI GCNGC 5 cut(s) 216, 219, 313, 441, 658
Ppu21I YACGTR 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 562, 771
PspGI CCWGG 2 cut(s) 562, 771
PstI CTGCAG 1 cut(s) 219
PstNI CAGNNNCTG 1 cut(s) 778
PsuI RGATCY 1 cut(s) 704
PsyI GACNNNGTC 1 cut(s) 610
RsaI GTAC 3 cut(s) 539, 598, 782
RsaNI GTAC 3 cut(s) 538, 597, 781
RseI CAYNNNNRTG 1 cut(s) 497
SaqAI TTAA 1 cut(s) 716
SatI GCNGC 5 cut(s) 215, 218, 312, 440, 657
Sau3AI GATC 5 cut(s) 81, 196, 238, 704, 801
ScrFI CCNGG 3 cut(s) 395, 564, 773
SetI ASST 6 cut(s) 153, 325, 444, 560, 583, 866
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 497
Sse9I AATT 8 cut(s) 15, 203, 257, 266, 383, 692, 711, 824
SsiI CCGC 2 cut(s) 708, 768
StyD4I CCNGG 3 cut(s) 393, 562, 771
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 5 cut(s) 176, 463, 496, 612, 780
TaiI ACGT 1 cut(s) 325
TaqII GACCGA 1 cut(s) 372
TasI AATT 8 cut(s) 15, 203, 257, 266, 383, 692, 711, 824
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 716
Tru9I TTAA 1 cut(s) 716
TscAI CASTG 4 cut(s) 179, 294, 341, 499
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 5 cut(s) 214, 217, 311, 439, 656
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 243, 309
TspRI CASTG 4 cut(s) 179, 294, 341, 499
Tth111I GACNNNGTC 1 cut(s) 610
XapI RAATTY 2 cut(s) 257, 383
XceI RCATGY 2 cut(s) 453, 749
Zsp2I ATGCAT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.