Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003206

Physical Location & Seq

Genomic Coordinates Reverse (-)

13718803 .. 13721175

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCTGGGAATTATTGTCACCATCTTTTCCAGAGGAAGAACTGTCCTGATGTTGACGATTTCAATTGACAAGGCTGTGCTGTTGAGATTTTCCCATGTCGATTATAGAAGTCATCAAAAGTTTCACAGGATCAATGCCACTTGGAAAAGGGATTCAAAATCCTCCCATCCGAGGAAGATGGAAGAGCTGTCAGTAGAGATTCCAACACAAACTATTCCTCACTGTGAACCATCAAAACATCCTGATCTGCAATTTGATCGGCTGCAACCATCAGATGAAGATTTAGATCAAGAGAAAAAGTTGGAATTTGGACAATTTGTTGCACGAGAGGCCGCACTGGATGAAGAATACTGGACAGCAGCATGGTTACGTGCAGAAAGTCACTGGGAGGAGCGAAAAAATGACCGATTTGCTGAGAGTAACAAAAGGAAATTTGCAGACCAGGAATTTAATGCTATAAAAAGACGAACAAAGGGGCAGCAGAGGCAGACATGCACATGCATTATCACGGTGAAGAAGGACACAAAGAATGTGAAACGTACTGTTGTGAAAAGTGTAGTTGGAACACTTGATTTGAGCATTCGGTACTTGTTGGATGGAGAGACCTTTCCAGGGGAACGGGCAAACGCTCCTCTCTTTTGCAGTATCAACAGGACACTGTCAAGTAAATATGGTTATATTTCAAACTTATGTGTGGCCAAAGCAGCACGACGCCAGGGTATTGCCAGCAATATGTTACAGTTTGCTATTAGATCCGCAATGTTAAATGCTGATGTCGAACAGATATATGTGCATGTGCATAAAAAGAACAAACCCGCGCAGGAACTGTACCATAAGCTGGGCTTTGAGATCATCGAAAGGGCGAGCTCTCAATTGTCTGAGGAGCAAACCTATTTGCTTTGTTTCAAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10

Protein Analysis

305

Amino Acids

35.21

Weight (kDa)

9.33

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06025 AT2G06025 AT2G06025 AT2G06025 AT2G06025 AT2G06025 AT2G06025
fragaria_vesca	FvH4_1g08620 FvH4_1g08620 FvH4_1g08620 FvH4_1g08620 FvH4_1g08620 FvH4_1g08620
malus_domestica	MD02G1091000.v1.1 MD15G1217100.v1.1
prunus_persica	Prupe.7G199400_v2.0.a1 Prupe.7G199400_v2.0.a1 Prupe.7G199400_v2.0.a1
pyrus_communis	pycom01g07710 pycom02g07250 pycom15g19270
rosa_chinensis	RchiOBHm_Chr2g0094881
rosa_laevigata	RLG00000016528
rosa_multiflora	Rmu_sc0006611.1_g000003
rosa_roxburghii	Rroxscaffold_2G00146800
rosa_rugosa	Rorug02G0048500 Rorug02G0048600 Rorug02G0048600 Rorug02G0048600 Rorug02G0048600
rosa_samantha	Rh2AG095100 Rh2BG096000 Rh2BG096100 Rh2CG097900 Rh2CG098000 Rh2DG094700
rosa_wichuraiana	Rw2G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	838
AccII	CGCG	1 cut(s)	818
AciI	CCGC	3 cut(s)	333, 756, 816
AclWI	GGATC	2 cut(s)	137, 747
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	3 cut(s)	305, 431, 446
AcyI	GRCGYC	1 cut(s)	712
AfaI	GTAC	3 cut(s)	541, 587, 830
AfiI	CCNNNNNNNGG	3 cut(s)	171, 612, 838
AgsI	TTSAA	4 cut(s)	63, 156, 684, 907
AjnI	CCWGG	3 cut(s)	441, 610, 714
AluBI	AGCT	3 cut(s)	187, 838, 867
AluI	AGCT	3 cut(s)	187, 838, 867
Alw21I	GWGCWC	1 cut(s)	869
Alw26I	GTCTC	1 cut(s)	596
AlwI	GGATC	2 cut(s)	137, 747
AlwNI	CAGNNNCTG	1 cut(s)	826
AoxI	GGCC	3 cut(s)	330, 696, 909
ApeKI	GCWGC	4 cut(s)	262, 359, 478, 704
ApoI	RAATTY	3 cut(s)	305, 431, 446
AspLEI	GCGC	1 cut(s)	820
AsuHPI	GGTGA	2 cut(s)	10, 523
BalI	TGGCCA	1 cut(s)	698
BanII	GRGCYC	1 cut(s)	869
BauI	CACGAG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	869
BbvI	GCAGC	4 cut(s)	249, 371, 490, 716
BccI	CCATC	6 cut(s)	29, 172, 174, 238, 277, 590
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	3 cut(s)	443, 612, 716
BcoDI	GTCTC	1 cut(s)	596
BisI	GCNGC	5 cut(s)	263, 333, 360, 479, 705
BlsI	GCNGC	5 cut(s)	264, 334, 361, 480, 706
Bme1390I	CCNGG	3 cut(s)	443, 612, 716
BmrFI	CCNGG	3 cut(s)	443, 612, 716
BmrI	ACTGGG	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	394
BsaAI	YACGTR	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	712
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	3 cut(s)	170, 611, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 612, 838
Bse1I	ACTGG	3 cut(s)	342, 356, 389
Bse3DI	GCAATG	1 cut(s)	765
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	3 cut(s)	443, 612, 716
BseDI	CCNNGG	3 cut(s)	170, 611, 715
BseGI	GGATG	4 cut(s)	166, 238, 346, 601
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	3 cut(s)	171, 612, 838
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	405, 870
BseNI	ACTGG	3 cut(s)	342, 356, 389
BseRI	GAGGAG	3 cut(s)	404, 621, 896
BseXI	GCAGC	4 cut(s)	249, 371, 490, 716
BseYI	CCCAGC	2 cut(s)	4, 838
BsgI	GTGCAG	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	818
BshFI	GGCC	3 cut(s)	332, 698, 911
BsiHKAI	GWGCWC	1 cut(s)	869
BslI	CCNNNNNNNGG	3 cut(s)	171, 612, 838
BsmAI	GTCTC	1 cut(s)	596
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	3 cut(s)	332, 698, 911
Bso31I	GGTCTC	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	869
Bsp143I	GATC	6 cut(s)	129, 244, 256, 286, 752, 849
BspACI	CCGC	3 cut(s)	333, 756, 816
BspANI	GGCC	3 cut(s)	332, 698, 911
BspCNI	CTCAG	2 cut(s)	406, 871
BspFNI	CGCG	1 cut(s)	818
BspPI	GGATC	2 cut(s)	137, 747
BspQI	GCTCTTC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	765
BsrI	ACTGG	3 cut(s)	342, 356, 389
BssECI	CCNNGG	3 cut(s)	170, 611, 715
BssMI	GATC	6 cut(s)	129, 244, 256, 286, 752, 849
BssNI	GRCGYC	1 cut(s)	712
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
Bst2UI	CCWGG	3 cut(s)	443, 612, 716
Bst4CI	ACNGT	7 cut(s)	43, 224, 511, 544, 660, 741, 828
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	712
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	727, 865
BstDEI	CTNAG	2 cut(s)	414, 879
BstF5I	GGATG	4 cut(s)	166, 238, 346, 601
BstFNI	CGCG	1 cut(s)	818
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	6 cut(s)	132, 247, 259, 289, 755, 852
BstMAI	GTCTC	1 cut(s)	596
BstMBI	GATC	6 cut(s)	129, 244, 256, 286, 752, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 484, 704
BstNI	CCWGG	3 cut(s)	443, 612, 716
BstNSI	RCATGY	3 cut(s)	495, 501, 797
BstSCI	CCNGG	3 cut(s)	441, 610, 714
BstUI	CGCG	1 cut(s)	818
BstV1I	GCAGC	4 cut(s)	249, 371, 490, 716
BstX2I	RGATCY	1 cut(s)	752
BstYI	RGATCY	1 cut(s)	752
BsuRI	GGCC	3 cut(s)	332, 698, 911
BtsCI	GGATG	4 cut(s)	166, 238, 346, 601
BtsIMutI	CAGTG	4 cut(s)	220, 335, 382, 656
Cac8I	GCNNGC	2 cut(s)	727, 865
CaiI	CAGNNNCTG	1 cut(s)	826
CfoI	GCGC	1 cut(s)	820
CseI	GACGC	1 cut(s)	720
Csp6I	GTAC	3 cut(s)	540, 586, 829
CviAII	CATG	5 cut(s)	95, 363, 492, 498, 794
CviJI	RGCY	9 cut(s)	74, 187, 262, 332, 698, 838, 843, 867, 911
CviKI_1	RGCY	9 cut(s)	74, 187, 262, 332, 698, 838, 843, 867, 911
CviQI	GTAC	3 cut(s)	540, 586, 829
DdeI	CTNAG	2 cut(s)	414, 879
DpnI	GATC	6 cut(s)	131, 246, 258, 288, 754, 851
DpnII	GATC	6 cut(s)	129, 244, 256, 286, 752, 849
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	867
Eco147I	AGGCCT	1 cut(s)	911
Eco24I	GRGCYC	1 cut(s)	869
Eco31I	GGTCTC	1 cut(s)	596
Eco53kI	GAGCTC	1 cut(s)	867
EcoICRI	GAGCTC	1 cut(s)	867
EcoRII	CCWGG	3 cut(s)	441, 610, 714
EcoT22I	ATGCAT	1 cut(s)	503
EcoT38I	GRGCYC	1 cut(s)	869
FaeI	CATG	5 cut(s)	98, 366, 495, 501, 797
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FatI	CATG	5 cut(s)	94, 362, 491, 497, 793
FauI	CCCGC	1 cut(s)	823
Fnu4HI	GCNGC	5 cut(s)	263, 333, 360, 479, 705
FokI	GGATG	4 cut(s)	153, 225, 353, 608
FriOI	GRGCYC	1 cut(s)	869
Fsp4HI	GCNGC	5 cut(s)	263, 333, 360, 479, 705
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	5 cut(s)	263, 333, 360, 479, 705
GsaI	CCCAGC	2 cut(s)	8, 842
HaeIII	GGCC	3 cut(s)	332, 698, 911
HgaI	GACGC	1 cut(s)	720
HhaI	GCGC	1 cut(s)	820
Hin1I	GRCGYC	1 cut(s)	712
Hin1II	CATG	5 cut(s)	98, 366, 495, 501, 797
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	152, 199
HphI	GGTGA	2 cut(s)	10, 523
Hpy166II	GTNNAC	2 cut(s)	54, 227
Hpy188I	TCNGA	3 cut(s)	171, 274, 880
Hpy188III	TCNNGA	4 cut(s)	30, 46, 242, 290
Hpy8I	GTNNAC	2 cut(s)	54, 227
Hpy99I	CGWCG	1 cut(s)	714
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	7 cut(s)	43, 224, 511, 544, 660, 741, 828
HpyCH4IV	ACGT	2 cut(s)	370, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 484, 704
HpyF3I	CTNAG	2 cut(s)	414, 879
HpySE526I	ACGT	2 cut(s)	370, 538
Hsp92I	GRCGYC	1 cut(s)	712
Hsp92II	CATG	5 cut(s)	98, 366, 495, 501, 797
HspAI	GCGC	1 cut(s)	818
Kzo9I	GATC	6 cut(s)	129, 244, 256, 286, 752, 849
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	391, 634, 883
Lsp1109I	GCAGC	4 cut(s)	249, 371, 490, 716
MaeII	ACGT	2 cut(s)	370, 538
MaeIII	GTNAC	5 cut(s)	16, 366, 380, 419, 735
MalI	GATC	6 cut(s)	131, 246, 258, 288, 754, 851
MboI	GATC	6 cut(s)	129, 244, 256, 286, 752, 849
MboII	GAAGA	6 cut(s)	48, 187, 194, 290, 356, 526
MfeI	CAATTG	2 cut(s)	63, 872
MflI	RGATCY	1 cut(s)	752
MhlI	GDGCHC	1 cut(s)	869
MlsI	TGGCCA	1 cut(s)	698
MluCI	AATT	8 cut(s)	9, 63, 251, 305, 314, 431, 446, 872
MluNI	TGGCCA	1 cut(s)	698
MmeI	TCCRAC	4 cut(s)	227, 282, 541, 573
MnlI	CCTC	9 cut(s)	26, 165, 172, 228, 322, 382, 477, 642, 874
Mox20I	TGGCCA	1 cut(s)	698
Mph1103I	ATGCAT	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	698
MseI	TTAA	2 cut(s)	450, 764
MslI	CAYNNNNRTG	1 cut(s)	496
Msp20I	TGGCCA	1 cut(s)	698
MspR9I	CCNGG	3 cut(s)	443, 612, 716
MunI	CAATTG	2 cut(s)	63, 872
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	3 cut(s)	443, 612, 716
MvnI	CGCG	1 cut(s)	818
MwoI	GCNNNNNNNGC	3 cut(s)	329, 484, 704
NdeII	GATC	6 cut(s)	129, 244, 256, 286, 752, 849
NlaIII	CATG	5 cut(s)	98, 366, 495, 501, 797
NmuCI	GTSAC	2 cut(s)	16, 380
NsiI	ATGCAT	1 cut(s)	503
NspI	RCATGY	3 cut(s)	495, 501, 797
PceI	AGGCCT	1 cut(s)	911
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	579
PfeI	GAWTC	2 cut(s)	152, 199
PflFI	GACNNNGTC	1 cut(s)	658
PflMI	CCANNNNNTGG	1 cut(s)	838
PkrI	GCNGC	5 cut(s)	264, 334, 361, 480, 706
Ppu21I	YACGTR	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	869
Psp6I	CCWGG	3 cut(s)	441, 610, 714
PspFI	CCCAGC	2 cut(s)	4, 838
PspGI	CCWGG	3 cut(s)	441, 610, 714
PstNI	CAGNNNCTG	1 cut(s)	826
PsuI	RGATCY	1 cut(s)	752
PsyI	GACNNNGTC	1 cut(s)	658
RsaI	GTAC	3 cut(s)	541, 587, 830
RsaNI	GTAC	3 cut(s)	540, 586, 829
RseI	CAYNNNNRTG	1 cut(s)	496
SacI	GAGCTC	1 cut(s)	869
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	450, 764
SatI	GCNGC	5 cut(s)	263, 333, 360, 479, 705
Sau3AI	GATC	6 cut(s)	129, 244, 256, 286, 752, 849
ScrFI	CCNGG	3 cut(s)	443, 612, 716
SduI	GDGCHC	1 cut(s)	869
SetI	ASST	7 cut(s)	189, 373, 541, 608, 840, 869, 893
SmiMI	CAYNNNNRTG	1 cut(s)	496
Sse9I	AATT	8 cut(s)	9, 63, 251, 305, 314, 431, 446, 872
SseBI	AGGCCT	1 cut(s)	911
SsiI	CCGC	3 cut(s)	333, 756, 816
SstI	GAGCTC	1 cut(s)	869
StuI	AGGCCT	1 cut(s)	911
StyD4I	CCNGG	3 cut(s)	441, 610, 714
TaaI	ACNGT	7 cut(s)	43, 224, 511, 544, 660, 741, 828
TaiI	ACGT	2 cut(s)	373, 541
TaqI	TCGA	3 cut(s)	99, 777, 855
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	8 cut(s)	9, 63, 251, 305, 314, 431, 446, 872
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	152, 199
Tru1I	TTAA	2 cut(s)	450, 764
Tru9I	TTAA	2 cut(s)	450, 764
TscAI	CASTG	4 cut(s)	227, 342, 389, 663
TseFI	GTSAC	2 cut(s)	16, 380
TseI	GCWGC	4 cut(s)	262, 359, 478, 704
Tsp45I	GTSAC	2 cut(s)	16, 380
TspDTI	ATGAA	2 cut(s)	291, 357
TspRI	CASTG	4 cut(s)	227, 342, 389, 663
Tth111I	GACNNNGTC	1 cut(s)	658
Van91I	CCANNNNNTGG	1 cut(s)	838
XapI	RAATTY	3 cut(s)	305, 431, 446
XceI	RCATGY	3 cut(s)	495, 501, 797
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.