Rorug02G0048600

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003206
Physical Location & Seq
Forward (+)
3747351 .. 3756577
9227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0048600.1

Sequence Viewer

Length: 606 bp
ATGGCGATCCCGGCCAACCTAAATTTTGTTTTAAGGCCCCTTAAAACTGAGGCCCTAGGCCCAAGGCGGGCACTGCTTGTAGAGATTTCTCCACTACTTGACGGCTCGTCGTCATTCTTCAGTCCTCTTATTCGAGACTTGGACTTCAGCTCTAAATCAGAACGACGCAGACGCCACGCCAAATCAGAAATCACAATCCCAATCCCAATCGCCGGTACTTATGCCATCTCCACAAAGTTAGATTGGGAAACCCGGTTGAGAAAAGCTTTTGAAGCTGCAAAAGGTTTGGAGTTTCTCCATGAACAAGTTAGTCCTCCAGTGATTCACAGAGAAATATACTCACCTGGCACGCAATGCAGCAAAACGAAGAAGTTATTAGGAGATACTCAACTTTCTAAAAATTTTGCGGTGAAGGAATTTGGCACTGCTTCTAGCAGAAACACATGTCCACCTCCCAAGGCAAAGGGCATTTCTTATTTGGTGGCTGAAGCTTTAGCCGTCCTTCATGACTCCTCTTGTGACCTAATTGCAAGATCATCAAAGTCTCCTACGGCGGCTGAAGCTTTAGCCGTCTTTGAGGGTGTTTCTCTGGCTTCATCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10

Protein Analysis

201

Amino Acids

21.85

Weight (kDa)

9.45

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 67, 407, 554
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 3 cut(s) 22, 400, 416
AcuI CTGAAG 4 cut(s) 103, 130, 507, 579
AcyI GRCGYC 1 cut(s) 172
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 67, 212
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 1 cut(s) 272
AhdI GACNNNNNGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 5 cut(s) 150, 266, 275, 491, 563
AluI AGCT 5 cut(s) 150, 266, 275, 491, 563
Alw26I GTCTC 2 cut(s) 129, 549
AoxI GGCC 4 cut(s) 12, 35, 51, 58
ApeKI GCWGC 2 cut(s) 275, 357
ApoI RAATTY 3 cut(s) 22, 400, 416
AspA2I CCTAGG 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 36, 52, 59
AsuC2I CCSGG 2 cut(s) 11, 253
AsuHPI GGTGA 2 cut(s) 333, 421
AvrII CCTAGG 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 262, 369
BccI CCATC 1 cut(s) 233
BceAI ACGGC 4 cut(s) 118, 482, 554, 567
BciT130I CCWGG 1 cut(s) 345
BcnI CCSGG 2 cut(s) 11, 253
BcoDI GTCTC 2 cut(s) 129, 549
BfaI CTAG 2 cut(s) 56, 432
BisI GCNGC 3 cut(s) 276, 358, 555
BlnI CCTAGG 1 cut(s) 55
BlsI GCNGC 3 cut(s) 277, 359, 556
Bme1390I CCNGG 3 cut(s) 11, 253, 345
BmeRI GACNNNNNGTC 1 cut(s) 106
BmgT120I GGNCC 3 cut(s) 36, 52, 59
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 3 cut(s) 11, 253, 345
BpmI CTGGAG 1 cut(s) 300
BpuMI CCSGG 2 cut(s) 11, 253
BsaHI GRCGYC 1 cut(s) 172
BsaJI CCNNGG 3 cut(s) 55, 62, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 212
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 3 cut(s) 55, 62, 456
BseLI CCNNNNNNNGG 2 cut(s) 67, 212
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 502
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 2 cut(s) 262, 369
BshFI GGCC 4 cut(s) 14, 37, 53, 60
BsiSI CCGG 3 cut(s) 11, 213, 253
BslI CCNNNNNNNGG 2 cut(s) 67, 212
BsmAI GTCTC 2 cut(s) 129, 549
BsnI GGCC 4 cut(s) 14, 37, 53, 60
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 6, 533
BspACI CCGC 3 cut(s) 67, 407, 554
BspANI GGCC 4 cut(s) 14, 37, 53, 60
BspCNI CTCAG 1 cut(s) 40
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 317
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 55, 62, 456
BssMI GATC 2 cut(s) 6, 533
BssNI GRCGYC 1 cut(s) 172
BssT1I CCWWGG 3 cut(s) 55, 62, 456
Bst2UI CCWGG 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 69, 350
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 2 cut(s) 9, 536
BstMAI GTCTC 2 cut(s) 129, 549
BstMBI GATC 2 cut(s) 6, 533
BstMWI GCNNNNNNNGC 5 cut(s) 11, 73, 272, 354, 560
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 3 cut(s) 9, 251, 343
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 262, 369
BsuRI GGCC 4 cut(s) 14, 37, 53, 60
BtsI GCAGTG 2 cut(s) 71, 423
BtsIMutI CAGTG 3 cut(s) 71, 324, 423
Cac8I GCNNGC 2 cut(s) 69, 350
CciI TCATGA 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 36, 52, 59
CseI GACGC 2 cut(s) 174, 180
Csp6I GTAC 1 cut(s) 216
CviAII CATG 3 cut(s) 299, 444, 506
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 8, 535
DpnII GATC 2 cut(s) 6, 533
DriI GACNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 12
Eam1105I GACNNNNNGTC 1 cut(s) 106
Eco130I CCWWGG 3 cut(s) 55, 62, 456
Eco57I CTGAAG 4 cut(s) 103, 130, 507, 579
EcoO109I RGGNCCY 2 cut(s) 36, 52
EcoRII CCWGG 1 cut(s) 343
EcoT14I CCWWGG 3 cut(s) 55, 62, 456
ErhI CCWWGG 3 cut(s) 55, 62, 456
FaeI CATG 3 cut(s) 302, 447, 509
FaiI YATR 6 cut(s) 222, 300, 337, 445, 507, 604
FatI CATG 3 cut(s) 298, 443, 505
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 276, 358, 555
Fsp4HI GCNGC 3 cut(s) 276, 358, 555
FspBI CTAG 2 cut(s) 56, 432
GluI GCNGC 3 cut(s) 276, 358, 555
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 4 cut(s) 14, 37, 53, 60
HapII CCGG 3 cut(s) 11, 213, 253
HgaI GACGC 2 cut(s) 174, 180
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 3 cut(s) 302, 447, 509
HindIII AAGCTT 3 cut(s) 264, 489, 561
HinfI GANTC 2 cut(s) 322, 509
HpaII CCGG 3 cut(s) 11, 213, 253
HphI GGTGA 2 cut(s) 333, 421
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 2 cut(s) 160, 187
Hpy188III TCNNGA 2 cut(s) 134, 506
Hpy8I GTNNAC 1 cut(s) 449
Hpy99I CGWCG 2 cut(s) 112, 168
HpyAV CCTTC 2 cut(s) 406, 512
HpyCH4V TGCA 3 cut(s) 278, 357, 530
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 73, 272, 354, 560
HpyF3I CTNAG 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 3 cut(s) 302, 447, 509
Kzo9I GATC 2 cut(s) 6, 533
LpnPI CCDG 7 cut(s) 24, 226, 266, 330, 330, 357, 575
Lsp1109I GCAGC 2 cut(s) 262, 369
MaeI CTAG 2 cut(s) 56, 432
MaeIII GTNAC 1 cut(s) 518
MalI GATC 2 cut(s) 8, 535
MboI GATC 2 cut(s) 6, 533
MboII GAAGA 2 cut(s) 109, 379
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 4 cut(s) 22, 400, 416, 525
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 6 cut(s) 43, 135, 324, 462, 523, 571
MseI TTAA 2 cut(s) 32, 42
MspI CCGG 3 cut(s) 11, 213, 253
MspR9I CCNGG 3 cut(s) 11, 253, 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 5 cut(s) 11, 73, 272, 354, 560
NciI CCSGG 2 cut(s) 11, 253
NdeII GATC 2 cut(s) 6, 533
NlaIII CATG 3 cut(s) 302, 447, 509
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 518
NspI RCATGY 1 cut(s) 447
PagI TCATGA 1 cut(s) 505
PciI ACATGT 1 cut(s) 443
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 3 cut(s) 277, 359, 556
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PscI ACATGT 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 3 cut(s) 36, 52, 59
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 32, 42
SatI GCNGC 3 cut(s) 276, 358, 555
Sau3AI GATC 2 cut(s) 6, 533
Sau96I GGNCC 3 cut(s) 36, 52, 59
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 3 cut(s) 11, 253, 345
SduI GDGCHC 1 cut(s) 73
Sse9I AATT 4 cut(s) 22, 400, 416, 525
SsiI CCGC 3 cut(s) 67, 407, 554
SspMI CTAG 2 cut(s) 56, 432
StyD4I CCNGG 3 cut(s) 9, 251, 343
StyI CCWWGG 3 cut(s) 55, 62, 456
TaqI TCGA 1 cut(s) 133
TasI AATT 4 cut(s) 22, 400, 416, 525
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 32, 42
Tru9I TTAA 2 cut(s) 32, 42
TscAI CASTG 3 cut(s) 78, 324, 430
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 2 cut(s) 275, 357
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 3 cut(s) 315, 494, 585
TspRI CASTG 3 cut(s) 78, 324, 430
XapI RAATTY 3 cut(s) 22, 400, 416
XceI RCATGY 1 cut(s) 447
XmaJI CCTAGG 1 cut(s) 55
XspI CTAG 2 cut(s) 56, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.