MD15G1217100.v1.1

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003206
Physical Location & Seq
Reverse (-)
17506951 .. 17511056
4106 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1217100.v1.1.491

Sequence Viewer

Length: 1023 bp
ATGGCGTTTAACTGTAAGGAAGTAGCTACATCCAGCAGGGATCAAACAAGCGTTTCACATGCTGGGAATTATTGTCACCATCTTTGTGACATAAGACATTTTTTAAGAAGCATCTCCCCCTCTGTGAAAGTCAATTCCAGAGGAAGGACTGTTCTGATGTTGACGATTTCAATTGACAAGGCTGTGCTGTTGAGATTTTCTCATGTCGATTATAGAAGTCATCAAAAGTTTCACAGGATCAATGCCACTTGGAAAAGGGATTTGAAGTCCTCCCATCCGAGGAAGATGGAAGAGCTGTCAGTAGAGATTCCAACACAAACTATTCCTCACTGTGAACCATCAAAACATCCTGATCTGCAATTTGACCGGCTGCAACCATCAGATGAAGATTTAGATCAACAGAAAAAGTTGGAATTTGGACAATTTGTTGCACGAGAGGCCGCACTGGATGAAGAATACTGGACAGCAGCATGGTTACGTGCAGAAAGTCACTGGGAGGAGCGAAAAAATGACCGATTTGCTGAGAGTAACAAAAGGAAATTTGCAGACCAGGAATTTAACGCTATAAAAAAACGAACGAAGGGGCAGCAGAGGCAGACATGCACATGCATTATCACGGTGAAGAAGGACACAAAGAATGCGAAACGTACTGTCGTGAAAAGTGTAGTTGGAACACTTGATTTGAGCATTCGGTACTTGTTGGATGGAGAGACCTTTCCAGGGGAACGGGTAAACGCTCCTCTCTTTTGCAGTATCAACAGGACACTGTCAAGTAAATATGGTTATATTTCAAACTTATGTGTGGCCAAAGCAGCACGACGCCAGGGTATTGCGAGCAATATGTTACAGTTTGCTATTAGATCCGCAATGTTAAATGCTGATGTCGAACTGATATATGTGCATGTGCATAAAAAGAACAAACCCGCGCAGGAACTGTACCGTAAGCTGGGCTTTGAGATCATCGAAAGGGCGAGCTCTCAATTGTCAGAGGAGCAAACCTATTTGCTTTGTTTCAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10

Protein Analysis

341

Amino Acids

39.25

Weight (kDa)

9.4

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 201 - 318 5.3e-13 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 255 - 319 1.7e-10 Acetyltransferase (GNAT) domain
FR47 PF08445 255 - 322 1.5e-08 FR47-like protein
Acetyltransf_10 PF13673 258 - 322 1e-08 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 926
AciI CCGC 3 cut(s) 441, 864, 924
AclWI GGATC 3 cut(s) 48, 245, 855
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 3 cut(s) 413, 539, 554
AcyI GRCGYC 1 cut(s) 820
AfaI GTAC 3 cut(s) 649, 695, 938
AfiI CCNNNNNNNGG 4 cut(s) 144, 279, 720, 946
AgsI TTSAA 4 cut(s) 171, 265, 792, 1015
AjnI CCWGG 3 cut(s) 549, 718, 822
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 4 cut(s) 26, 295, 946, 975
AluI AGCT 4 cut(s) 26, 295, 946, 975
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 1 cut(s) 704
AlwI GGATC 3 cut(s) 48, 245, 855
AlwNI CAGNNNCTG 1 cut(s) 934
AoxI GGCC 3 cut(s) 438, 804, 1017
ApeKI GCWGC 4 cut(s) 370, 467, 586, 812
ApoI RAATTY 3 cut(s) 413, 539, 554
AspLEI GCGC 1 cut(s) 928
AsuHPI GGTGA 2 cut(s) 68, 631
BalI TGGCCA 1 cut(s) 806
BanII GRGCYC 1 cut(s) 977
BauI CACGAG 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 977
BbvI GCAGC 4 cut(s) 357, 479, 598, 824
BccI CCATC 6 cut(s) 87, 280, 282, 346, 385, 698
BciT130I CCWGG 3 cut(s) 551, 720, 824
BcoDI GTCTC 1 cut(s) 704
BisI GCNGC 5 cut(s) 371, 441, 468, 587, 813
BlsI GCNGC 5 cut(s) 372, 442, 469, 588, 814
Bme1390I CCNGG 3 cut(s) 551, 720, 824
BmrFI CCNGG 3 cut(s) 551, 720, 824
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 502
BplI GAGNNNNNCTC 2 cut(s) 184, 216
BsaAI YACGTR 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 820
BsaI GGTCTC 1 cut(s) 704
BsaJI CCNNGG 3 cut(s) 278, 719, 823
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 279, 720, 946
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 3 cut(s) 450, 464, 497
Bse3DI GCAATG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 3 cut(s) 551, 720, 824
BseDI CCNNGG 3 cut(s) 278, 719, 823
BseGI GGATG 5 cut(s) 29, 274, 346, 454, 709
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 4 cut(s) 144, 279, 720, 946
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 3 cut(s) 450, 464, 497
BseRI GAGGAG 3 cut(s) 512, 729, 1004
BseXI GCAGC 4 cut(s) 357, 479, 598, 824
BseYI CCCAGC 2 cut(s) 62, 946
BsgI GTGCAG 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 926
BshFI GGCC 3 cut(s) 440, 806, 1019
BsiHKAI GWGCWC 1 cut(s) 977
BsiSI CCGG 1 cut(s) 367
BslI CCNNNNNNNGG 4 cut(s) 144, 279, 720, 946
BsmAI GTCTC 1 cut(s) 704
BsmI GAATGC 2 cut(s) 643, 687
BsnI GGCC 3 cut(s) 440, 806, 1019
Bso31I GGTCTC 1 cut(s) 704
Bsp1286I GDGCHC 1 cut(s) 977
Bsp143I GATC 6 cut(s) 40, 237, 352, 394, 860, 957
BspACI CCGC 3 cut(s) 441, 864, 924
BspANI GGCC 3 cut(s) 440, 806, 1019
BspCNI CTCAG 1 cut(s) 514
BspFNI CGCG 1 cut(s) 926
BspPI GGATC 3 cut(s) 48, 245, 855
BspQI GCTCTTC 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 704
BsrDI GCAATG 1 cut(s) 873
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 3 cut(s) 450, 464, 497
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 3 cut(s) 278, 719, 823
BssMI GATC 6 cut(s) 40, 237, 352, 394, 860, 957
BssNI GRCGYC 1 cut(s) 820
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 551, 720, 824
Bst4CI ACNGT 9 cut(s) 14, 151, 332, 619, 652, 768, 849, 936, 941
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 820
BstBAI YACGTR 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 835, 973
BstDEI CTNAG 1 cut(s) 522
BstF5I GGATG 5 cut(s) 29, 274, 346, 454, 709
BstFNI CGCG 1 cut(s) 926
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 6 cut(s) 43, 240, 355, 397, 863, 960
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 6 cut(s) 40, 237, 352, 394, 860, 957
BstMWI GCNNNNNNNGC 3 cut(s) 437, 592, 812
BstNI CCWGG 3 cut(s) 551, 720, 824
BstNSI RCATGY 4 cut(s) 62, 603, 609, 905
BstSCI CCNGG 3 cut(s) 549, 718, 822
BstUI CGCG 1 cut(s) 926
BstV1I GCAGC 4 cut(s) 357, 479, 598, 824
BstX2I RGATCY 1 cut(s) 860
BstYI RGATCY 1 cut(s) 860
BsuRI GGCC 3 cut(s) 440, 806, 1019
BtsCI GGATG 5 cut(s) 29, 274, 346, 454, 709
BtsIMutI CAGTG 4 cut(s) 328, 443, 490, 764
Cac8I GCNNGC 2 cut(s) 835, 973
CaiI CAGNNNCTG 1 cut(s) 934
CfoI GCGC 1 cut(s) 928
Cfr10I RCCGGY 1 cut(s) 366
CseI GACGC 1 cut(s) 828
Csp6I GTAC 3 cut(s) 648, 694, 937
CviAII CATG 6 cut(s) 59, 203, 471, 600, 606, 902
CviQI GTAC 3 cut(s) 648, 694, 937
DdeI CTNAG 1 cut(s) 522
DpnI GATC 6 cut(s) 42, 239, 354, 396, 862, 959
DpnII GATC 6 cut(s) 40, 237, 352, 394, 860, 957
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 975
Eco147I AGGCCT 1 cut(s) 1019
Eco24I GRGCYC 1 cut(s) 977
Eco31I GGTCTC 1 cut(s) 704
Eco53kI GAGCTC 1 cut(s) 975
EcoICRI GAGCTC 1 cut(s) 975
EcoRII CCWGG 3 cut(s) 549, 718, 822
EcoT22I ATGCAT 1 cut(s) 611
EcoT38I GRGCYC 1 cut(s) 977
FaeI CATG 6 cut(s) 62, 206, 474, 603, 609, 905
FalI AAGNNNNNCTT 2 cut(s) 935, 967
FatI CATG 6 cut(s) 58, 202, 470, 599, 605, 901
FauI CCCGC 1 cut(s) 931
Fnu4HI GCNGC 5 cut(s) 371, 441, 468, 587, 813
FokI GGATG 5 cut(s) 16, 261, 333, 461, 716
FriOI GRGCYC 1 cut(s) 977
Fsp4HI GCNGC 5 cut(s) 371, 441, 468, 587, 813
GlaI GCGC 1 cut(s) 927
GluI GCNGC 5 cut(s) 371, 441, 468, 587, 813
GsaI CCCAGC 2 cut(s) 66, 950
HaeIII GGCC 3 cut(s) 440, 806, 1019
HapII CCGG 1 cut(s) 367
HgaI GACGC 1 cut(s) 828
HhaI GCGC 1 cut(s) 928
Hin1I GRCGYC 1 cut(s) 820
Hin1II CATG 6 cut(s) 62, 206, 474, 603, 609, 905
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 1 cut(s) 307
HpaII CCGG 1 cut(s) 367
HphI GGTGA 2 cut(s) 68, 631
Hpy166II GTNNAC 3 cut(s) 162, 335, 733
Hpy188I TCNGA 4 cut(s) 156, 279, 382, 988
Hpy188III TCNNGA 3 cut(s) 138, 350, 655
Hpy8I GTNNAC 3 cut(s) 162, 335, 733
Hpy99I CGWCG 1 cut(s) 822
HpyAV CCTTC 3 cut(s) 138, 574, 619
HpyCH4III ACNGT 9 cut(s) 14, 151, 332, 619, 652, 768, 849, 936, 941
HpyCH4IV ACGT 2 cut(s) 478, 646
HpyF10VI GCNNNNNNNGC 3 cut(s) 437, 592, 812
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 2 cut(s) 478, 646
Hsp92I GRCGYC 1 cut(s) 820
Hsp92II CATG 6 cut(s) 62, 206, 474, 603, 609, 905
HspAI GCGC 1 cut(s) 926
Kzo9I GATC 6 cut(s) 40, 237, 352, 394, 860, 957
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 3 cut(s) 499, 742, 991
Lsp1109I GCAGC 4 cut(s) 357, 479, 598, 824
LweI GCATC 1 cut(s) 120
MaeII ACGT 2 cut(s) 478, 646
MaeIII GTNAC 6 cut(s) 74, 86, 474, 488, 527, 843
MalI GATC 6 cut(s) 42, 239, 354, 396, 862, 959
MboI GATC 6 cut(s) 40, 237, 352, 394, 860, 957
MboII GAAGA 5 cut(s) 295, 302, 398, 464, 634
MfeI CAATTG 2 cut(s) 171, 980
MflI RGATCY 1 cut(s) 860
MhlI GDGCHC 1 cut(s) 977
MlsI TGGCCA 1 cut(s) 806
MluCI AATT 9 cut(s) 67, 133, 171, 359, 413, 422, 539, 554, 980
MluNI TGGCCA 1 cut(s) 806
MmeI TCCRAC 4 cut(s) 335, 390, 649, 681
Mox20I TGGCCA 1 cut(s) 806
Mph1103I ATGCAT 1 cut(s) 611
MscI TGGCCA 1 cut(s) 806
MseI TTAA 4 cut(s) 9, 104, 558, 872
MslI CAYNNNNRTG 2 cut(s) 84, 604
Msp20I TGGCCA 1 cut(s) 806
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 3 cut(s) 551, 720, 824
MunI CAATTG 2 cut(s) 171, 980
Mva1269I GAATGC 2 cut(s) 643, 687
MvaI CCWGG 3 cut(s) 551, 720, 824
MvnI CGCG 1 cut(s) 926
MwoI GCNNNNNNNGC 3 cut(s) 437, 592, 812
NdeII GATC 6 cut(s) 40, 237, 352, 394, 860, 957
NlaIII CATG 6 cut(s) 62, 206, 474, 603, 609, 905
NmuCI GTSAC 3 cut(s) 74, 86, 488
NsiI ATGCAT 1 cut(s) 611
NspI RCATGY 4 cut(s) 62, 603, 609, 905
PceI AGGCCT 1 cut(s) 1019
PciSI GCTCTTC 1 cut(s) 285
PctI GAATGC 2 cut(s) 643, 687
PfeI GAWTC 1 cut(s) 307
PflFI GACNNNGTC 1 cut(s) 766
PkrI GCNGC 5 cut(s) 372, 442, 469, 588, 814
Ppu21I YACGTR 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 977
Psp6I CCWGG 3 cut(s) 549, 718, 822
PspFI CCCAGC 2 cut(s) 62, 946
PspGI CCWGG 3 cut(s) 549, 718, 822
PstNI CAGNNNCTG 1 cut(s) 934
PsuI RGATCY 1 cut(s) 860
PsyI GACNNNGTC 1 cut(s) 766
RsaI GTAC 3 cut(s) 649, 695, 938
RsaNI GTAC 3 cut(s) 648, 694, 937
RseI CAYNNNNRTG 2 cut(s) 84, 604
SacI GAGCTC 1 cut(s) 977
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 4 cut(s) 9, 104, 558, 872
SatI GCNGC 5 cut(s) 371, 441, 468, 587, 813
Sau3AI GATC 6 cut(s) 40, 237, 352, 394, 860, 957
ScrFI CCNGG 3 cut(s) 551, 720, 824
SduI GDGCHC 1 cut(s) 977
SetI ASST 8 cut(s) 28, 297, 481, 649, 716, 948, 977, 1001
SfaNI GCATC 1 cut(s) 120
SmiMI CAYNNNNRTG 2 cut(s) 84, 604
Sse9I AATT 9 cut(s) 67, 133, 171, 359, 413, 422, 539, 554, 980
SseBI AGGCCT 1 cut(s) 1019
SsiI CCGC 3 cut(s) 441, 864, 924
SstI GAGCTC 1 cut(s) 977
StuI AGGCCT 1 cut(s) 1019
StyD4I CCNGG 3 cut(s) 549, 718, 822
TaaI ACNGT 9 cut(s) 14, 151, 332, 619, 652, 768, 849, 936, 941
TaiI ACGT 2 cut(s) 481, 649
TaqI TCGA 3 cut(s) 207, 885, 963
TaqII GACCGA 1 cut(s) 528
TasI AATT 9 cut(s) 67, 133, 171, 359, 413, 422, 539, 554, 980
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 4 cut(s) 9, 104, 558, 872
Tru9I TTAA 4 cut(s) 9, 104, 558, 872
TscAI CASTG 4 cut(s) 335, 450, 497, 771
TseFI GTSAC 3 cut(s) 74, 86, 488
TseI GCWGC 4 cut(s) 370, 467, 586, 812
Tsp45I GTSAC 3 cut(s) 74, 86, 488
TspDTI ATGAA 2 cut(s) 399, 465
TspRI CASTG 4 cut(s) 335, 450, 497, 771
Tth111I GACNNNGTC 1 cut(s) 766
XapI RAATTY 3 cut(s) 413, 539, 554
XceI RCATGY 4 cut(s) 62, 603, 609, 905
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.