Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012561

Physical Location & Seq

Genomic Coordinates Reverse (-)

7096200 .. 7096859

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTTTCCTTCGTTCAAATACAGAACATGGTTAGAACGATCAGATCTCAATTTCGAAGACTATTTACAAGCTCACCCTTGGCTCACCCACAATGCAGATGCCTTGTTCTGGCTCCCGAATCAAAAACAAAGCAGCGGGATTGCAAAACCCATCATGGTAATCATGTAGACATCCCCGAACTCAACTTCCAATTGAAGCAGCTGATCAAAACTGGTGATCTCAAACACGCCCGGAAGGTGTTCGATGAAATGCCCAAGAGAGATGAGGTCACATGGACCAATATGATCTCAGGCTACGTTGGAGTCTCTGATTCCTCTGAAGCATTGGCTCTGTTTTCAAACATGTGGGTGCGGCCGGATATCGGCATGGACCCTTTTCTTCTCAGCGTTGCGCTCAAGGCTGGCGGACTTGGTGGGGAGTTGACTTACGGGGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

147

Amino Acids

16.47

Weight (kDa)

8.86

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12840
malus_domestica	MD15G1256900.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871
rosa_multiflora	Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313860
rosa_rugosa	Rorug02G0091200
rosa_samantha	Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	3 cut(s)	136, 352, 405
AcoI	YGGCCR	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	339
AfiI	CCNNNNNNNGG	2 cut(s)	109, 362
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	17, 196, 339
AloI	GAACNNNNNNTCC	2 cut(s)	171, 203
AluBI	AGCT	2 cut(s)	72, 202
AluI	AGCT	2 cut(s)	72, 202
Alw26I	GTCTC	1 cut(s)	310
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	133, 199
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	2 cut(s)	276, 370
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	66, 77, 227
AsuII	TTCGAA	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	276, 370
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	145, 211
BccI	CCATC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	310
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	3 cut(s)	134, 200, 353
BlsI	GCNGC	3 cut(s)	135, 201, 354
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	2 cut(s)	276, 370
BmgT120I	GGNCC	2 cut(s)	276, 370
BmiI	GGNNCC	2 cut(s)	114, 372
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	64
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 362
Bse1I	ACTGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	109, 362
BseMII	CTCAG	2 cut(s)	303, 397
BseNI	ACTGG	1 cut(s)	217
BseX3I	CGGCCG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	145, 211
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	355
BsiEI	CGRYCG	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	232, 356
BslI	CCNNNNNNNGG	2 cut(s)	109, 362
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	355
Bsp119I	TTCGAA	1 cut(s)	55
Bsp143I	GATC	5 cut(s)	39, 44, 204, 217, 285
BspACI	CCGC	3 cut(s)	136, 352, 405
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	302, 396
BspLI	GGNNCC	2 cut(s)	114, 372
BspT104I	TTCGAA	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	5 cut(s)	39, 44, 204, 217, 285
BssT1I	CCWWGG	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	289, 383
BstF5I	GGATG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	5 cut(s)	42, 47, 207, 220, 288
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	5 cut(s)	39, 44, 204, 217, 285
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	145, 211
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BstZI	CGGCCG	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	276, 370
CviAII	CATG	6 cut(s)	28, 155, 164, 273, 343, 367
CviJI	RGCY	8 cut(s)	72, 83, 113, 202, 294, 329, 355, 401
CviKI_1	RGCY	8 cut(s)	72, 83, 113, 202, 294, 329, 355, 401
DdeI	CTNAG	2 cut(s)	289, 383
DpnI	GATC	5 cut(s)	41, 46, 206, 219, 287
DpnII	GATC	5 cut(s)	39, 44, 204, 217, 285
EaeI	YGGCCR	1 cut(s)	353
EagI	CGGCCG	1 cut(s)	353
EciI	GGCGGA	1 cut(s)	420
EclXI	CGGCCG	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	276, 370
Eco52I	CGGCCG	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	6 cut(s)	31, 158, 167, 276, 346, 370
FaiI	YATR	7 cut(s)	29, 156, 165, 274, 284, 344, 368
FatI	CATG	6 cut(s)	27, 154, 163, 272, 342, 366
FauI	CCCGC	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	134, 200, 353
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	134, 200, 353
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	3 cut(s)	134, 200, 353
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	2 cut(s)	232, 356
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	6 cut(s)	31, 158, 167, 276, 346, 370
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	3 cut(s)	119, 303, 311
HpaII	CCGG	2 cut(s)	232, 356
HphI	GGTGA	3 cut(s)	66, 77, 227
Hpy166II	GTNNAC	2 cut(s)	169, 423
Hpy188I	TCNGA	3 cut(s)	44, 310, 319
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	2 cut(s)	169, 423
HpyAV	CCTTC	2 cut(s)	19, 229
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	96, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	289, 383
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	6 cut(s)	31, 158, 167, 276, 346, 370
HspAI	GCGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	5 cut(s)	39, 44, 204, 217, 285
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	6 cut(s)	95, 198, 245, 276, 369, 387
Lsp1109I	GCAGC	2 cut(s)	145, 211
LweI	GCATC	1 cut(s)	89
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	5 cut(s)	41, 46, 206, 219, 287
MboI	GATC	5 cut(s)	39, 44, 204, 217, 285
MboII	GAAGA	2 cut(s)	69, 371
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	2 cut(s)	50, 191
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	3 cut(s)	259, 325, 427
MroXI	GAANNNNTTC	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	2 cut(s)	136, 202
MspI	CCGG	2 cut(s)	232, 356
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	5 cut(s)	39, 44, 204, 217, 285
NlaIII	CATG	6 cut(s)	31, 158, 167, 276, 346, 370
NlaIV	GGNNCC	2 cut(s)	114, 372
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	55
PciI	ACATGT	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	119, 311
PkrI	GCNGC	3 cut(s)	135, 201, 354
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PscI	ACATGT	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	114, 372
PspPI	GGNCC	2 cut(s)	276, 370
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	347
SatI	GCNGC	3 cut(s)	134, 200, 353
Sau3AI	GATC	5 cut(s)	39, 44, 204, 217, 285
Sau96I	GGNCC	2 cut(s)	276, 370
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	6 cut(s)	74, 204, 240, 270, 300, 438
SfaNI	GCATC	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	55
SinI	GGWCC	2 cut(s)	276, 370
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	50, 191
SsiI	CCGC	3 cut(s)	136, 352, 405
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	55, 243
TasI	AATT	2 cut(s)	50, 191
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	119, 311
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	133, 199
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	261
VpaK11BI	GGWCC	2 cut(s)	276, 370
XceI	RCATGY	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.