Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012561

Physical Location & Seq

Genomic Coordinates Reverse (-)

21864614 .. 21865183

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1256900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCTTGAACTCAACGCTCATTTGAAGCAGCTAGTAAAAACCGGTAACGTTGGAGACGCCCGGCTTTTAGAGAGATATGATTTCATGGACCAATATGATTTCAGGCTACGTTGGTCTTATGGGGAAGTAATACATGGGTACTCGATGAAATCGGGTTTAGTATATTCGGTCTTCGTGGGCAATGCGCTTCTTGACATGTATATGAAGATTGGTAAGATTGAGAAAGGATGCAGGATATTTGACGAAATGCCGATAAGAAATGTGGTGTCTTGGACTACTATTATAACTGGGCTTGTTCGTGCAGGTTACAATGTAGAAGGGTTGGAGTATTTTTCTGAAATGTGGAGGTCGAAGGTGCAGTATGATGCATATGTGTTTGCTATCTCGTTGAAGGCGTGTGCTGATTTGGGTGCTTTGAAATATGGGAGAGCAATTCACACGCAAACAATGAAGAATGGGTTCAATGAGAGCTCATTTGTGGCGAACTCTCTGCGACAAAGTGTAACAATGGAATATATTTTTCTTCTTAAGACTAAAAACATCCTTACATCGTGCAATATACATAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

190

Amino Acids

21.72

Weight (kDa)

8.88

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	86 - 134	1.8e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12840
malus_domestica	MD15G1256900.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871
rosa_multiflora	Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313860
rosa_rugosa	Rorug02G0091200
rosa_samantha	Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	293
AclI	AACGTT	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	140
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	195
AgeI	ACCGGT	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	8, 25, 391, 418, 463
AluBI	AGCT	2 cut(s)	31, 471
AluI	AGCT	2 cut(s)	31, 471
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	28
AsiGI	ACCGGT	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	473
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	32
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	218, 355
BmuI	ACTGGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	233, 540
BseMI	GCAATG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	40
BsgI	GTGCAG	2 cut(s)	321, 377
BshTI	ACCGGT	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	42, 61
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	473
BspMI	ACCTGC	1 cut(s)	293
BspTI	CTTAAG	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	41
BssNI	GRCGYC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	527
BstF5I	GGATG	2 cut(s)	233, 540
BstHHI	GCGC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	233, 540
BveI	ACCTGC	1 cut(s)	293
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	88
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	139
CspAI	ACCGGT	1 cut(s)	41
CviAII	CATG	3 cut(s)	85, 134, 196
CviJI	RGCY	5 cut(s)	31, 64, 106, 292, 471
CviKI_1	RGCY	5 cut(s)	31, 64, 106, 292, 471
CviQI	GTAC	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	471
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	3 cut(s)	88, 137, 199
FatI	CATG	3 cut(s)	84, 133, 195
FauNDI	CATATG	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	240, 527
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	29
HapII	CCGG	2 cut(s)	42, 61
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	88, 137, 199
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	42, 61
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	311, 346, 385
HpyCH4IV	ACGT	2 cut(s)	48, 109
HpyCH4V	TGCA	5 cut(s)	231, 302, 358, 368, 555
HpySE526I	ACGT	2 cut(s)	48, 109
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	88, 137, 199
HspAI	GCGC	1 cut(s)	185
LpnPI	CCDG	6 cut(s)	55, 74, 88, 217, 273, 288
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	218, 355
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	2 cut(s)	48, 109
MaeIII	GTNAC	3 cut(s)	44, 305, 502
MboII	GAAGA	4 cut(s)	163, 217, 463, 515
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	1 cut(s)	432
MmeI	TCCRAC	2 cut(s)	31, 303
MnlI	CCTC	1 cut(s)	339
Mph1103I	ATGCAT	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	2 cut(s)	42, 61
MspR9I	CCNGG	1 cut(s)	61
NciI	CCSGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	370
NlaIII	CATG	3 cut(s)	88, 137, 199
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	1 cut(s)	199
PciI	ACATGT	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	458
PinAI	ACCGGT	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	30
PscI	ACATGT	1 cut(s)	195
PsiI	TTATAA	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	473
Psp1406I	AACGTT	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	200
SacI	GAGCTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	1 cut(s)	29
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	7 cut(s)	33, 51, 112, 307, 350, 357, 473
SfaNI	GCATC	2 cut(s)	218, 355
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	1 cut(s)	432
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	59
TaiI	ACGT	2 cut(s)	51, 112
TaqI	TCGA	2 cut(s)	143, 350
TaqII	GACCGA	1 cut(s)	157
TasI	AATT	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	4 cut(s)	73, 161, 218, 464
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	88
XceI	RCATGY	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.