Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003303.1

Orthogroup ID

OG0012561

Physical Location & Seq

Genomic Coordinates Reverse (-)

67185 .. 67724

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003303.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgatagttgcagttgtgactgaatgccgaaaccagaaatcaacatcaaagcaccttgagcagaaaacccatctgggtaatcatgtagacatgctcgaactcaactctcaactgaagcagtttctcaaaatttgtaacgttaaagactctcggaagatgttcaataaaaggcctaagagagatgcggtttcatggacagagtacttggcgaaatcgggtattgtgaactctatcattgtgggaagtgctcttcttgacttgtatatgaaggttgttgggattgagaatggttgtatagttttcgataaaatgctgctaagaaatgtggtgtctgggactaccattatcactggtgaaattggtgagcaagttcaaattgttggtgataatctccttgttacaaacccaaagcgaggggagaaagcaatcaaagagaagagttgtaatgcccttcttttcaaggtgaatcaaattggttcagtaaccaaaagtgttgaagtgtcaaaacgtgctggccaggatgtcatggcaaatcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

179

Amino Acids

19.85

Weight (kDa)

9.49

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12840
malus_domestica	MD15G1256900.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871
rosa_multiflora	Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313860
rosa_rugosa	Rorug02G0091200
rosa_samantha	Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	185
AclI	AACGTT	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	163, 374, 460, 497
AjnI	CCWGG	1 cut(s)	516
Alw21I	GWGCWC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	170, 514
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	158
AsuHPI	GGTGA	4 cut(s)	365, 374, 395, 475
BalI	TGGCCA	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	518
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	518
BmrFI	CCNGG	1 cut(s)	518
BmsI	GCATC	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	518
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	300
BshFI	GGCC	2 cut(s)	172, 516
BsiHKAI	GWGCWC	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	172, 516
Bsp1286I	GDGCHC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	172, 516
BspQI	GCTCTTC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	518
Bst6I	CTCTTC	2 cut(s)	255, 431
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	2 cut(s)	174, 317
BstF5I	GGATG	1 cut(s)	526
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	518
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	172, 516
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	348, 535
Cac8I	GCNNGC	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	83, 91, 192, 526
CviJI	RGCY	2 cut(s)	172, 516
CviKI_1	RGCY	2 cut(s)	172, 516
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	174, 317
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	2 cut(s)	255, 431
EarI	CTCTTC	2 cut(s)	255, 431
Eco147I	AGGCCT	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	516
FaeI	CATG	4 cut(s)	86, 94, 195, 529
FaiI	YATR	7 cut(s)	84, 92, 193, 264, 266, 296, 527
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	4 cut(s)	82, 90, 191, 525
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	172, 516
Hin1II	CATG	4 cut(s)	86, 94, 195, 529
HinfI	GANTC	2 cut(s)	146, 466
HphI	GGTGA	4 cut(s)	365, 374, 395, 475
Hpy166II	GTNNAC	2 cut(s)	88, 226
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	2 cut(s)	88, 226
HpyAV	CCTTC	2 cut(s)	262, 461
HpyCH4IV	ACGT	2 cut(s)	138, 508
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	174, 317
HpySE526I	ACGT	2 cut(s)	138, 508
Hsp92II	CATG	4 cut(s)	86, 94, 195, 529
LguI	GCTCTTC	1 cut(s)	255
LpnPI	CCDG	7 cut(s)	47, 59, 318, 336, 498, 503, 530
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	1 cut(s)	172
MaeII	ACGT	2 cut(s)	138, 508
MaeIII	GTNAC	4 cut(s)	16, 134, 397, 481
MboII	GAAGA	3 cut(s)	166, 242, 448
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	4 cut(s)	129, 357, 375, 471
MluNI	TGGCCA	1 cut(s)	516
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	1 cut(s)	407
Mox20I	TGGCCA	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	518
Mva1269I	GAATGC	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	518
MwoI	GCNNNNNNNGC	1 cut(s)	58
NlaIII	CATG	4 cut(s)	86, 94, 195, 529
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp1406I	AACGTT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	516
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	314
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	518
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	5 cut(s)	57, 141, 273, 465, 511
SfaNI	GCATC	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	4 cut(s)	129, 357, 375, 471
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	516
TaiI	ACGT	2 cut(s)	141, 511
TaqI	TCGA	2 cut(s)	96, 303
TasI	AATT	4 cut(s)	129, 357, 375, 471
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	180, 281
TspRI	CASTG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	129
XceI	RCATGY	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.