Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002571.1

Orthogroup ID

OG0012561

Physical Location & Seq

Genomic Coordinates Reverse (-)

60813 .. 62423

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002571.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgcattgtgctaggcctatgttgctgcaacacgtgtcttgcatgtcagcttccagctatatatgctgtcgctcaaactgttatcgtcttcaaggcacccaccaatttcatagtgagttcactcaattttcatcccaaccaagctacccaccaccaccaccaccaccaccatccgaaacaatcatcaatgggtatgtttttcctcaccagtttccacatctttctgcaaatcgcactcagttgagcgctaattcatttccgcccccgcctcctccttctgcccaccatattatcattttcagcagcctacaccacctatacctccaggccactatcaaccacctccgcctcttgttccgaactgccaatactttgttttgcacctgcaatagccactatattagcaccaacctccggtcatattcagacaccccacaacgcctctctcacctctaccttcttatcattgttttcagcgatgatagagactgtactcctgcaatcaacaagctcaaaccgattcggtccgcggaacccgatgctttcgttgagacatctcttactgccattcccgtgataatagttgcagttgtgattgaatgccaaaaccagaaatcaacatcaaagcaccttaagcagaaaacccatctgggtaatcatgtagacatgctcaaactcaactctaaactgaagcagtttctcaaaatttgtaacgttaaagactcccggaagatgttcgataaaaggcctaagagagatgcagtttcatggaccgggtacttggcgaaatcgggtattgtgaactctgtcattgtgggaagtgctcttcttgacttgtatatgaaggttgttgggattgagaatggttgtatagttttcgataaaatgctgctaagaaatgtggtgtctgggactaccattatcactggtgaaattggtgagcaagttcaaattgttggtgataatctccttgttacaaacccaaagcgaggggagaaagcaatcaaagagaagagttgtaatgcccttcttttcaaggtgaatcaaattggttcagtaaccaaaagtgttgaagtgtcaaaacgtgatggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

364

Amino Acids

40.65

Weight (kDa)

9.38

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12840
malus_domestica	MD15G1256900.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871
rosa_multiflora	Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313860
rosa_rugosa	Rorug02G0091200
rosa_samantha	Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	1 cut(s)	530
AciI	CCGC	5 cut(s)	260, 266, 346, 528, 530
AclI	AACGTT	1 cut(s)	714
AcsI	RAATTY	1 cut(s)	705
AcuI	CTGAAG	1 cut(s)	710
AcvI	CACGTG	1 cut(s)	34
AfaI	GTAC	2 cut(s)	493, 779
AfeI	AGCGCT	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	414, 989
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	2 cut(s)	31, 33
AgsI	TTSAA	5 cut(s)	92, 599, 950, 1036, 1073
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	4 cut(s)	50, 57, 144, 511
AluI	AGCT	4 cut(s)	50, 57, 144, 511
Alw21I	GWGCWC	1 cut(s)	826
Alw26I	GTCTC	2 cut(s)	480, 545
Aor51HI	AGCGCT	1 cut(s)	247
AoxI	GGCC	3 cut(s)	14, 327, 746
ApeKI	GCWGC	3 cut(s)	25, 303, 889
ApoI	RAATTY	1 cut(s)	705
Asp700I	GAANNNNTTC	1 cut(s)	734
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	525, 771
AsuC2I	CCSGG	2 cut(s)	727, 775
AsuHPI	GGTGA	6 cut(s)	197, 440, 941, 950, 971, 1051
AvaII	GGWCC	2 cut(s)	525, 771
BanI	GGYRCC	1 cut(s)	95
BbrPI	CACGTG	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	826
BbvI	GCAGC	3 cut(s)	12, 315, 876
BccI	CCATC	3 cut(s)	178, 654, 1082
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	2 cut(s)	727, 775
BcoDI	GTCTC	2 cut(s)	480, 545
BfaI	CTAG	2 cut(s)	12, 1093
BfoI	RGCGCY	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	392
BisI	GCNGC	3 cut(s)	26, 304, 890
BlsI	GCNGC	3 cut(s)	27, 305, 891
Bme1390I	CCNGG	3 cut(s)	326, 727, 775
Bme18I	GGWCC	2 cut(s)	525, 771
BmgT120I	GGNCC	2 cut(s)	525, 771
BmiI	GGNNCC	2 cut(s)	97, 534
BmrFI	CCNGG	3 cut(s)	326, 727, 775
BmsI	GCATC	2 cut(s)	529, 748
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	727, 775
BsaAI	YACGTR	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 989
Bse1I	ACTGG	2 cut(s)	208, 931
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	131, 170
BseLI	CCNNNNNNNGG	2 cut(s)	414, 989
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	208, 931
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	12, 315, 876
Bsh1236I	CGCG	1 cut(s)	530
BshFI	GGCC	3 cut(s)	16, 329, 748
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	826
BsiSI	CCGG	3 cut(s)	415, 727, 774
BslFI	GGGAC	1 cut(s)	925
BslI	CCNNNNNNNGG	2 cut(s)	414, 989
BsmAI	GTCTC	2 cut(s)	480, 545
BsmFI	GGGAC	1 cut(s)	925
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	3 cut(s)	16, 329, 748
Bsp1286I	GDGCHC	1 cut(s)	826
BspACI	CCGC	5 cut(s)	260, 266, 346, 528, 530
BspANI	GGCC	3 cut(s)	16, 329, 748
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	2 cut(s)	97, 534
BspMI	ACCTGC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	831
BspT107I	GGYRCC	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	632
BsrI	ACTGG	2 cut(s)	208, 931
BssECI	CCNNGG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	80, 491
Bst6I	CTCTTC	2 cut(s)	831, 1007
BstAFI	CTTAAG	1 cut(s)	632
BstBAI	YACGTR	1 cut(s)	34
BstDEI	CTNAG	3 cut(s)	237, 750, 893
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	131, 170
BstFNI	CGCG	1 cut(s)	530
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstMAI	GTCTC	2 cut(s)	480, 545
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 63, 634
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	2 cut(s)	46, 670
BstSCI	CCNGG	3 cut(s)	324, 725, 773
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	3 cut(s)	12, 315, 876
BstV2I	GAAGAC	1 cut(s)	80
BsuRI	GGCC	3 cut(s)	16, 329, 748
BtgI	CCRYGG	1 cut(s)	528
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	131, 170
BtsIMutI	CAGTG	1 cut(s)	924
BveI	ACCTGC	1 cut(s)	392
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	525, 771
Cfr42I	CCGCGG	1 cut(s)	531
CpoI	CGGWCCG	1 cut(s)	525
Csp6I	GTAC	2 cut(s)	492, 778
CspI	CGGWCCG	1 cut(s)	525
CviAII	CATG	4 cut(s)	43, 659, 667, 768
CviQI	GTAC	2 cut(s)	492, 778
DdeI	CTNAG	3 cut(s)	237, 750, 893
Eam1104I	CTCTTC	2 cut(s)	831, 1007
EarI	CTCTTC	2 cut(s)	831, 1007
EciI	GGCGGA	2 cut(s)	249, 335
Eco147I	AGGCCT	2 cut(s)	16, 748
Eco47I	GGWCC	2 cut(s)	525, 771
Eco47III	AGCGCT	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	710
Eco72I	CACGTG	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	324
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	46, 662, 670, 771
FaqI	GGGAC	1 cut(s)	925
FatI	CATG	4 cut(s)	42, 658, 666, 767
FauI	CCCGC	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	3 cut(s)	26, 304, 890
FokI	GGATG	2 cut(s)	118, 157
Fsp4HI	GCNGC	3 cut(s)	26, 304, 890
FspBI	CTAG	2 cut(s)	12, 1093
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	3 cut(s)	26, 304, 890
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	16, 329, 748
HapII	CCGG	3 cut(s)	415, 727, 774
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	46, 662, 670, 771
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	520, 722, 1042
HpaII	CCGG	3 cut(s)	415, 727, 774
HphI	GGTGA	6 cut(s)	197, 440, 941, 950, 971, 1051
Hpy166II	GTNNAC	3 cut(s)	120, 664, 802
Hpy188I	TCNGA	3 cut(s)	175, 359, 427
Hpy188III	TCNNGA	1 cut(s)	830
Hpy8I	GTNNAC	3 cut(s)	120, 664, 802
HpyAV	CCTTC	4 cut(s)	285, 467, 838, 1037
HpyCH4III	ACNGT	2 cut(s)	80, 491
HpyCH4IV	ACGT	3 cut(s)	33, 714, 1084
HpyCH4V	TGCA	9 cut(s)	4, 28, 42, 227, 381, 387, 500, 587, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 63, 634
HpyF3I	CTNAG	3 cut(s)	237, 750, 893
HpySE526I	ACGT	3 cut(s)	33, 714, 1084
Hsp92II	CATG	4 cut(s)	46, 662, 670, 771
HspAI	GCGC	1 cut(s)	246
KspI	CCGCGG	1 cut(s)	531
LguI	GCTCTTC	1 cut(s)	831
Lsp1109I	GCAGC	3 cut(s)	12, 315, 876
LweI	GCATC	2 cut(s)	529, 748
MaeI	CTAG	2 cut(s)	12, 1093
MaeII	ACGT	3 cut(s)	33, 714, 1084
MaeIII	GTNAC	3 cut(s)	710, 973, 1057
MboII	GAAGA	4 cut(s)	80, 742, 818, 1024
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	7 cut(s)	104, 125, 250, 705, 933, 951, 1047
MlyI	GAGTC	1 cut(s)	716
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	734
MseI	TTAA	2 cut(s)	633, 717
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	3 cut(s)	415, 727, 774
MspR9I	CCNGG	3 cut(s)	326, 727, 775
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	3 cut(s)	22, 63, 634
NciI	CCSGG	2 cut(s)	727, 775
NlaIII	CATG	4 cut(s)	46, 662, 670, 771
NlaIV	GGNNCC	2 cut(s)	97, 534
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	46, 670
PaqCI	CACCTGC	1 cut(s)	392
PceI	AGGCCT	2 cut(s)	16, 748
PciSI	GCTCTTC	1 cut(s)	831
PctI	GAATGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	2 cut(s)	520, 1042
PfoI	TCCNGGA	1 cut(s)	725
PkrI	GCNGC	3 cut(s)	27, 305, 891
PleI	GAGTC	1 cut(s)	716
PmaCI	CACGTG	1 cut(s)	34
PmlI	CACGTG	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	716
Ppu21I	YACGTR	1 cut(s)	34
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	324
PspCI	CACGTG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	97, 534
PspPI	GGNCC	2 cut(s)	525, 771
PsrI	GAACNNNNNNTAC	2 cut(s)	352, 384
RsaI	GTAC	2 cut(s)	493, 779
RsaNI	GTAC	2 cut(s)	492, 778
RseI	CAYNNNNRTG	1 cut(s)	572
Rsr2I	CGGWCCG	1 cut(s)	525
RsrII	CGGWCCG	1 cut(s)	525
SacII	CCGCGG	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	2 cut(s)	633, 717
SatI	GCNGC	3 cut(s)	26, 304, 890
Sau96I	GGNCC	2 cut(s)	525, 771
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	3 cut(s)	326, 727, 775
SduI	GDGCHC	1 cut(s)	826
SfaNI	GCATC	2 cut(s)	529, 748
Sfr303I	CCGCGG	1 cut(s)	531
SgrBI	CCGCGG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	525, 771
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	7 cut(s)	104, 125, 250, 705, 933, 951, 1047
SseBI	AGGCCT	2 cut(s)	16, 748
SsiI	CCGC	5 cut(s)	260, 266, 346, 528, 530
SspMI	CTAG	2 cut(s)	12, 1093
StuI	AGGCCT	2 cut(s)	16, 748
StyD4I	CCNGG	3 cut(s)	324, 725, 773
TaaI	ACNGT	2 cut(s)	80, 491
TaiI	ACGT	3 cut(s)	36, 717, 1087
TaqI	TCGA	2 cut(s)	738, 879
TaqII	GACCGA	1 cut(s)	513
TasI	AATT	7 cut(s)	104, 125, 250, 705, 933, 951, 1047
TatI	WGTACW	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	520, 1042
Tru1I	TTAA	2 cut(s)	633, 717
Tru9I	TTAA	2 cut(s)	633, 717
TscAI	CASTG	1 cut(s)	931
TseI	GCWGC	3 cut(s)	25, 303, 889
TspDTI	ATGAA	5 cut(s)	98, 120, 243, 756, 857
TspRI	CASTG	1 cut(s)	931
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	2 cut(s)	525, 771
XapI	RAATTY	1 cut(s)	705
XceI	RCATGY	2 cut(s)	46, 670
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	734
XspI	CTAG	2 cut(s)	12, 1093
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.