Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002389.1

Orthogroup ID

OG0012561

Physical Location & Seq

Genomic Coordinates Reverse (-)

102079 .. 102450

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002389.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgcttgaactcaactctcaactgaagcagctagtcaaaatttgcaatgttaaaggcgtctggaagatgttcgataaaaggcttaagagagatgcggtttcatggaccagtatgatttcaggcgatgttagagtctctgatttctctaaagcattagttctgttctctaacatgtgggtacagccaggtctctgcatggacccttttcttcttagcattgcactcaaggcttgtagacttggtattaacttgtcttatggggaagctgtacatgggtacttggcgaaattgggtattgtgaactctatctttgtgggaagtgctcttcttgacttgtatatgaaggttgtggggattgagaagggtgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

123

Amino Acids

13.64

Weight (kDa)

9.41

Isoelectric Point (pI)

22.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12840
malus_domestica	MD15G1256900.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871
rosa_multiflora	Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313860
rosa_rugosa	Rorug02G0091200
rosa_samantha	Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	235
AciI	CCGC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	3 cut(s)	180, 270, 278
AflII	CTTAAG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	2 cut(s)	31, 266
AluI	AGCT	2 cut(s)	31, 266
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	139, 194
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	105, 199
AvaII	GGWCC	2 cut(s)	105, 199
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	139, 194
BfaI	CTAG	1 cut(s)	32
BfrI	CTTAAG	1 cut(s)	83
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	105, 199
BmgT120I	GGNCC	2 cut(s)	105, 199
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	2 cut(s)	52, 216
BseBI	CCWGG	1 cut(s)	186
BseMI	GCAATG	2 cut(s)	52, 216
BseNI	ACTGG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	139, 194
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	268
BspACI	CCGC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	52, 216
BsrGI	TGTACA	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	212
BstMAI	GTCTC	2 cut(s)	139, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	40
BtgZI	GCGATG	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	105, 199
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	179, 269, 277
CviAII	CATG	4 cut(s)	102, 172, 196, 272
CviJI	RGCY	5 cut(s)	31, 82, 184, 230, 266
CviKI_1	RGCY	5 cut(s)	31, 82, 184, 230, 266
CviQI	GTAC	3 cut(s)	179, 269, 277
DdeI	CTNAG	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	105, 199
Eco57I	CTGAAG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	184
FaeI	CATG	4 cut(s)	105, 175, 199, 275
FaiI	YATR	9 cut(s)	103, 113, 173, 197, 258, 273, 339, 341, 370
FatI	CATG	4 cut(s)	101, 171, 195, 271
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	1 cut(s)	29
HgaI	GACGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	4 cut(s)	105, 175, 199, 275
HinfI	GANTC	1 cut(s)	132
Hpy166II	GTNNAC	2 cut(s)	236, 301
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	61, 329
Hpy8I	GTNNAC	2 cut(s)	236, 301
HpyAV	CCTTC	2 cut(s)	337, 355
HpyCH4V	TGCA	3 cut(s)	45, 195, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	105, 175, 199, 275
LguI	GCTCTTC	1 cut(s)	330
LpnPI	CCDG	5 cut(s)	46, 105, 121, 171, 198
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	32
MboII	GAAGA	3 cut(s)	76, 200, 317
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	39, 287
MlyI	GAGTC	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	3 cut(s)	51, 84, 246
MspCI	CTTAAG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	105, 175, 199, 275
NlaIV	GGNNCC	1 cut(s)	201
NspI	RCATGY	1 cut(s)	175
PciI	ACATGT	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	105, 199
RsaI	GTAC	3 cut(s)	180, 270, 278
RsaNI	GTAC	3 cut(s)	179, 269, 277
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	51, 84, 246
SatI	GCNGC	1 cut(s)	29
Sau96I	GGNCC	2 cut(s)	105, 199
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	4 cut(s)	33, 190, 268, 348
SfaNI	GCATC	1 cut(s)	82
SinI	GGWCC	2 cut(s)	105, 199
SmlI	CTYRAG	2 cut(s)	83, 224
SmoI	CTYRAG	2 cut(s)	83, 224
Sse9I	AATT	2 cut(s)	39, 287
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	184
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	39, 287
TatI	WGTACW	1 cut(s)	268
Tru1I	TTAA	3 cut(s)	51, 84, 246
Tru9I	TTAA	3 cut(s)	51, 84, 246
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	90, 356
Vha464I	CTTAAG	1 cut(s)	83
VpaK11BI	GGWCC	2 cut(s)	105, 199
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.