Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012561

Physical Location & Seq

Genomic Coordinates Reverse (-)

47786372 .. 47793578

Gene Structure 7207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG358800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTCGATAAAAGGCCTAAGAGAGATGCGGGTTCATGGACCGGGTACTTGGCGAAATCAGGTATTGTGAACTCTGTCATTGTGGGAAGTGCTCTTCTTGAATTGTATATGAAGGTTGTTGGGATTGAGAATGGTTGTATAGTTTTCAATAAAATGCTGCTAAGAAATGTGGTGTCTGGGACTACCATTATCACTGGTGAAATTGGTGAGCAAGTTCAAATTGTTGGTGATAATCTCCTTGTTAGAAACCCAAAGCGAGGGGAGAAAGCAATCAAAGAGAAGAGTTGTAATCCCCTTCTTTTCAAGGTGAATCAAATTGGTTCAGTAACCAAAAGTGTTGAAGTGTCAAAACGTGCTGGCCAGGATGCCACGGCAAATCACCGAAGTGGTGCAACTGAGGAAGATGGCACAGTTCTCAAAGCTTTTAACAACATTCTTCATCGAAACAAGATATTTTGGAGTGAAGATGAGTTGGAGATGATGGTAATGGATTTCCTAAGATTGGATTTTGGGAGGTTGAGGAAGCTCTGGGGAGCTATGGCATTGATGAATGCCATGACTAAGTCCGGAGAAGACGAGTTGAGATTAATGCTTCATGTTCAGACTTGCAACAATGAAATGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004634 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0030054 GO:0031967 GO:0031975 GO:0033993 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko03018 ko04066 map00010 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map03018 map04066

Pfam Domains

Protein Families

Enolase_C Enolase_N

Protein Analysis

208

Amino Acids

23.18

Weight (kDa)

8.97

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Enolase_C	PF00113	49 - 134	1.4e-20	Enolase, C-terminal TIM barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12840
malus_domestica	MD15G1256900.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871
rosa_multiflora	Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313860
rosa_rugosa	Rorug02G0091200
rosa_samantha	Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	566
AciI	CCGC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	358
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	257, 502
AgsI	TTSAA	5 cut(s)	101, 148, 218, 304, 341
AjnI	CCWGG	1 cut(s)	360
AleI	CACNNNNGTG	1 cut(s)	384
AluBI	AGCT	3 cut(s)	422, 526, 536
AluI	AGCT	3 cut(s)	422, 526, 536
Alw21I	GWGCWC	1 cut(s)	94
Aor13HI	TCCGGA	1 cut(s)	566
AoxI	GGCC	2 cut(s)	14, 358
ApeKI	GCWGC	1 cut(s)	157
AseI	ATTAAT	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	5 cut(s)	209, 218, 239, 319, 371
AvaII	GGWCC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	2 cut(s)	398, 475
BceAI	ACGGC	1 cut(s)	387
BciT130I	CCWGG	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	43
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	43, 362
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	43, 362
BmsI	GCATC	2 cut(s)	16, 355
BpiI	GAAGAC	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	369
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 502
Bse1I	ACTGG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	566
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	2 cut(s)	257, 502
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	144
BshFI	GGCC	2 cut(s)	16, 360
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	42, 567
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	257, 502
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	16, 360
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp13I	TCCGGA	1 cut(s)	566
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	2 cut(s)	16, 360
BspCNI	CTCAG	1 cut(s)	388
BspEI	TCCGGA	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	2 cut(s)	99, 275
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	5 cut(s)	18, 161, 396, 497, 561
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	41, 360
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	579
BsuRI	GGCC	2 cut(s)	16, 360
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	36, 556, 596
CviJI	RGCY	5 cut(s)	16, 360, 422, 526, 536
CviKI_1	RGCY	5 cut(s)	16, 360, 422, 526, 536
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	5 cut(s)	18, 161, 396, 497, 561
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	2 cut(s)	99, 275
EarI	CTCTTC	2 cut(s)	99, 275
Eco147I	AGGCCT	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	360
FaeI	CATG	3 cut(s)	39, 559, 599
FaiI	YATR	7 cut(s)	37, 108, 110, 140, 539, 557, 597
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	3 cut(s)	35, 555, 595
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	16, 360
HapII	CCGG	2 cut(s)	42, 567
Hin1II	CATG	3 cut(s)	39, 559, 599
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	2 cut(s)	42, 567
HphI	GGTGA	5 cut(s)	209, 218, 239, 319, 371
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	603
Hpy188III	TCNNGA	2 cut(s)	98, 567
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	106, 305
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	392, 609
HpyF3I	CTNAG	5 cut(s)	18, 161, 396, 497, 561
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	3 cut(s)	39, 559, 599
Kpn2I	TCCGGA	1 cut(s)	566
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	533
LpnPI	CCDG	9 cut(s)	45, 55, 162, 180, 342, 347, 374, 514, 580
Lsp1109I	GCAGC	1 cut(s)	144
LweI	GCATC	2 cut(s)	16, 355
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	325
MboII	GAAGA	6 cut(s)	86, 292, 413, 428, 476, 584
MhlI	GDGCHC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	4 cut(s)	101, 201, 219, 315
MluNI	TGGCCA	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	4 cut(s)	251, 391, 507, 513
Mox20I	TGGCCA	1 cut(s)	360
MroI	TCCGGA	1 cut(s)	566
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	2 cut(s)	426, 587
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	360
MspI	CCGG	2 cut(s)	42, 567
MspR9I	CCNGG	2 cut(s)	43, 362
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	362
NciI	CCSGG	1 cut(s)	43
NlaIII	CATG	3 cut(s)	39, 559, 599
OliI	CACNNNNGTG	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	99
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	562
PkrI	GCNGC	1 cut(s)	159
PshBI	ATTAAT	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspPI	GGNCC	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	562
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	426, 587
SatI	GCNGC	1 cut(s)	158
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	43, 362
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	8 cut(s)	64, 117, 309, 355, 424, 518, 528, 538
SfaNI	GCATC	2 cut(s)	16, 355
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	4 cut(s)	101, 201, 219, 315
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	41, 360
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	6, 442
TasI	AATT	4 cut(s)	101, 201, 219, 315
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	426, 587
Tru9I	TTAA	2 cut(s)	426, 587
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	5 cut(s)	24, 125, 428, 563, 584
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	39
VspI	ATTAAT	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.