Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g12840 |
| malus_domestica | MD15G1256900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871 |
| rosa_multiflora | Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00313860 |
| rosa_rugosa | Rorug02G0091200 |
| rosa_samantha | Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 252 |
| AciI | CCGC | 2 cut(s) | 99, 167 |
| AcsI | RAATTY | 2 cut(s) | 48, 294 |
| AcuI | CTGAAG | 1 cut(s) | 299 |
| AcyI | GRCGYC | 1 cut(s) | 312 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 21 |
| AgsI | TTSAA | 1 cut(s) | 63 |
| AluBI | AGCT | 1 cut(s) | 286 |
| AluI | AGCT | 1 cut(s) | 286 |
| Alw26I | GTCTC | 1 cut(s) | 125 |
| AoxI | GGCC | 1 cut(s) | 335 |
| ApeKI | GCWGC | 1 cut(s) | 283 |
| ApoI | RAATTY | 2 cut(s) | 48, 294 |
| BbvI | GCAGC | 1 cut(s) | 295 |
| BccI | CCATC | 1 cut(s) | 243 |
| BcoDI | GTCTC | 1 cut(s) | 125 |
| BfaI | CTAG | 3 cut(s) | 21, 239, 287 |
| BfmI | CTRYAG | 1 cut(s) | 34 |
| BisI | GCNGC | 2 cut(s) | 168, 284 |
| BlsI | GCNGC | 2 cut(s) | 169, 285 |
| BmsI | GCATC | 2 cut(s) | 100, 170 |
| BpuEI | CTTGAG | 1 cut(s) | 242 |
| BsaHI | GRCGYC | 1 cut(s) | 312 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 21 |
| Bse1I | ACTGG | 2 cut(s) | 125, 181 |
| BseGI | GGATG | 1 cut(s) | 185 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 21 |
| BseNI | ACTGG | 2 cut(s) | 125, 181 |
| BseXI | GCAGC | 1 cut(s) | 295 |
| BshFI | GGCC | 1 cut(s) | 337 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 21 |
| BsmAI | GTCTC | 1 cut(s) | 125 |
| BsnI | GGCC | 1 cut(s) | 337 |
| BspACI | CCGC | 2 cut(s) | 99, 167 |
| BspANI | GGCC | 1 cut(s) | 337 |
| BsrI | ACTGG | 2 cut(s) | 125, 181 |
| BssNI | GRCGYC | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 1 cut(s) | 74 |
| BstACI | GRCGYC | 1 cut(s) | 312 |
| BstC8I | GCNNGC | 2 cut(s) | 27, 31 |
| BstDEI | CTNAG | 1 cut(s) | 339 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 19 |
| BstF5I | GGATG | 1 cut(s) | 185 |
| BstMAI | GTCTC | 1 cut(s) | 125 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 223 |
| BstNSI | RCATGY | 1 cut(s) | 259 |
| BstSFI | CTRYAG | 1 cut(s) | 34 |
| BstV1I | GCAGC | 1 cut(s) | 295 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 53 |
| BsuRI | GGCC | 1 cut(s) | 337 |
| BtsCI | GGATG | 1 cut(s) | 185 |
| Cac8I | GCNNGC | 2 cut(s) | 27, 31 |
| CseI | GACGC | 1 cut(s) | 320 |
| CviAII | CATG | 3 cut(s) | 53, 248, 256 |
| CviJI | RGCY | 5 cut(s) | 25, 81, 170, 286, 337 |
| CviKI_1 | RGCY | 5 cut(s) | 25, 81, 170, 286, 337 |
| DdeI | CTNAG | 1 cut(s) | 339 |
| Eco147I | AGGCCT | 1 cut(s) | 337 |
| Eco57I | CTGAAG | 1 cut(s) | 299 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 19 |
| FaeI | CATG | 3 cut(s) | 56, 251, 259 |
| FaiI | YATR | 4 cut(s) | 54, 122, 249, 257 |
| FatI | CATG | 3 cut(s) | 52, 247, 255 |
| FblI | GTMKAC | 1 cut(s) | 252 |
| Fnu4HI | GCNGC | 2 cut(s) | 168, 284 |
| FokI | GGATG | 1 cut(s) | 192 |
| Fsp4HI | GCNGC | 2 cut(s) | 168, 284 |
| FspBI | CTAG | 3 cut(s) | 21, 239, 287 |
| GluI | GCNGC | 2 cut(s) | 168, 284 |
| HaeIII | GGCC | 1 cut(s) | 337 |
| HgaI | GACGC | 1 cut(s) | 320 |
| Hin1I | GRCGYC | 1 cut(s) | 312 |
| Hin1II | CATG | 3 cut(s) | 56, 251, 259 |
| HinfI | GANTC | 2 cut(s) | 59, 203 |
| Hpy166II | GTNNAC | 1 cut(s) | 253 |
| Hpy188I | TCNGA | 1 cut(s) | 202 |
| Hpy8I | GTNNAC | 1 cut(s) | 253 |
| HpyAV | CCTTC | 2 cut(s) | 61, 200 |
| HpyCH4III | ACNGT | 1 cut(s) | 74 |
| HpyCH4IV | ACGT | 1 cut(s) | 95 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 223 |
| HpyF3I | CTNAG | 1 cut(s) | 339 |
| HpySE526I | ACGT | 1 cut(s) | 95 |
| Hsp92I | GRCGYC | 1 cut(s) | 312 |
| Hsp92II | CATG | 3 cut(s) | 56, 251, 259 |
| LpnPI | CCDG | 5 cut(s) | 138, 153, 162, 179, 329 |
| Lsp1109I | GCAGC | 1 cut(s) | 295 |
| LweI | GCATC | 2 cut(s) | 100, 170 |
| MaeI | CTAG | 3 cut(s) | 21, 239, 287 |
| MaeII | ACGT | 1 cut(s) | 95 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MboII | GAAGA | 1 cut(s) | 331 |
| MluCI | AATT | 2 cut(s) | 48, 294 |
| MseI | TTAA | 2 cut(s) | 186, 306 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 223 |
| NlaIII | CATG | 3 cut(s) | 56, 251, 259 |
| NmuCI | GTSAC | 1 cut(s) | 172 |
| NspI | RCATGY | 1 cut(s) | 259 |
| PceI | AGGCCT | 1 cut(s) | 337 |
| PfeI | GAWTC | 2 cut(s) | 59, 203 |
| PkrI | GCNGC | 2 cut(s) | 169, 285 |
| SaqAI | TTAA | 2 cut(s) | 186, 306 |
| SatI | GCNGC | 2 cut(s) | 168, 284 |
| SetI | ASST | 5 cut(s) | 98, 192, 222, 244, 288 |
| SfaNI | GCATC | 2 cut(s) | 100, 170 |
| SfcI | CTRYAG | 1 cut(s) | 34 |
| SmlI | CTYRAG | 1 cut(s) | 221 |
| SmoI | CTYRAG | 1 cut(s) | 221 |
| Sse9I | AATT | 2 cut(s) | 48, 294 |
| SseBI | AGGCCT | 1 cut(s) | 337 |
| SsiI | CCGC | 2 cut(s) | 99, 167 |
| SspMI | CTAG | 3 cut(s) | 21, 239, 287 |
| StuI | AGGCCT | 1 cut(s) | 337 |
| TaaI | ACNGT | 1 cut(s) | 74 |
| TaiI | ACGT | 1 cut(s) | 98 |
| TaqI | TCGA | 2 cut(s) | 117, 261 |
| TasI | AATT | 2 cut(s) | 48, 294 |
| TauI | GCSGC | 1 cut(s) | 170 |
| TfiI | GAWTC | 2 cut(s) | 59, 203 |
| Tru1I | TTAA | 2 cut(s) | 186, 306 |
| Tru9I | TTAA | 2 cut(s) | 186, 306 |
| TseFI | GTSAC | 1 cut(s) | 172 |
| TseI | GCWGC | 1 cut(s) | 283 |
| Tsp45I | GTSAC | 1 cut(s) | 172 |
| TspDTI | ATGAA | 2 cut(s) | 17, 41 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 19 |
| XapI | RAATTY | 2 cut(s) | 48, 294 |
| XceI | RCATGY | 1 cut(s) | 259 |
| XmiI | GTMKAC | 1 cut(s) | 252 |
| XspI | CTAG | 3 cut(s) | 21, 239, 287 |