Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g12840 |
| malus_domestica | MD15G1256900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871 |
| rosa_multiflora | Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00313860 |
| rosa_rugosa | Rorug02G0091200 |
| rosa_samantha | Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 381 |
| AccII | CGCG | 1 cut(s) | 617 |
| AciI | CCGC | 1 cut(s) | 323 |
| AcsI | RAATTY | 1 cut(s) | 504 |
| AfaI | GTAC | 4 cut(s) | 204, 212, 552, 575 |
| AflIII | ACRYGT | 2 cut(s) | 105, 267 |
| AgsI | TTSAA | 2 cut(s) | 463, 490 |
| AjnI | CCWGG | 1 cut(s) | 118 |
| AluBI | AGCT | 1 cut(s) | 420 |
| AluI | AGCT | 1 cut(s) | 420 |
| Alw21I | GWGCWC | 1 cut(s) | 259 |
| Alw26I | GTCTC | 3 cut(s) | 73, 128, 368 |
| ApeKI | GCWGC | 2 cut(s) | 83, 115 |
| ApoI | RAATTY | 1 cut(s) | 504 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 545 |
| AspLEI | GCGC | 3 cut(s) | 157, 374, 448 |
| AspS9I | GGNCC | 2 cut(s) | 39, 133 |
| AsuHPI | GGTGA | 2 cut(s) | 229, 296 |
| AvaII | GGWCC | 2 cut(s) | 39, 133 |
| Bbv12I | GWGCWC | 1 cut(s) | 259 |
| BbvI | GCAGC | 2 cut(s) | 95, 127 |
| BciT130I | CCWGG | 1 cut(s) | 120 |
| BcoDI | GTCTC | 3 cut(s) | 73, 128, 368 |
| BfmI | CTRYAG | 2 cut(s) | 81, 421 |
| BisI | GCNGC | 3 cut(s) | 84, 116, 323 |
| BlsI | GCNGC | 3 cut(s) | 85, 117, 324 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| Bme18I | GGWCC | 2 cut(s) | 39, 133 |
| BmgT120I | GGNCC | 2 cut(s) | 39, 133 |
| BmiI | GGNNCC | 1 cut(s) | 135 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BpuEI | CTTGAG | 1 cut(s) | 143 |
| BsaI | GGTCTC | 2 cut(s) | 128, 368 |
| Bse118I | RCCGGY | 1 cut(s) | 374 |
| Bse1I | ACTGG | 1 cut(s) | 364 |
| Bse3DI | GCAATG | 3 cut(s) | 150, 324, 437 |
| BseBI | CCWGG | 1 cut(s) | 120 |
| BseGI | GGATG | 1 cut(s) | 640 |
| BseMI | GCAATG | 3 cut(s) | 150, 324, 437 |
| BseMII | CTCAG | 2 cut(s) | 160, 252 |
| BseNI | ACTGG | 1 cut(s) | 364 |
| BseXI | GCAGC | 2 cut(s) | 95, 127 |
| BseYI | CCCAGC | 1 cut(s) | 325 |
| BsgI | GTGCAG | 2 cut(s) | 134, 626 |
| Bsh1236I | CGCG | 1 cut(s) | 617 |
| BsiHKAI | GWGCWC | 1 cut(s) | 259 |
| BsiSI | CCGG | 1 cut(s) | 375 |
| BsmAI | GTCTC | 3 cut(s) | 73, 128, 368 |
| Bso31I | GGTCTC | 2 cut(s) | 128, 368 |
| Bsp1286I | GDGCHC | 1 cut(s) | 259 |
| Bsp1407I | TGTACA | 2 cut(s) | 202, 573 |
| Bsp68I | TCGCGA | 1 cut(s) | 617 |
| BspACI | CCGC | 1 cut(s) | 323 |
| BspCNI | CTCAG | 2 cut(s) | 159, 251 |
| BspFNI | CGCG | 1 cut(s) | 617 |
| BspLI | GGNNCC | 1 cut(s) | 135 |
| BspMAI | CTGCAG | 1 cut(s) | 85 |
| BspQI | GCTCTTC | 1 cut(s) | 264 |
| BspTNI | GGTCTC | 2 cut(s) | 128, 368 |
| BsrDI | GCAATG | 3 cut(s) | 150, 324, 437 |
| BsrFI | RCCGGY | 1 cut(s) | 374 |
| BsrGI | TGTACA | 2 cut(s) | 202, 573 |
| BsrI | ACTGG | 1 cut(s) | 364 |
| BssAI | RCCGGY | 1 cut(s) | 374 |
| Bst2UI | CCWGG | 1 cut(s) | 120 |
| Bst6I | CTCTTC | 1 cut(s) | 264 |
| BstAUI | TGTACA | 2 cut(s) | 202, 573 |
| BstC8I | GCNNGC | 1 cut(s) | 450 |
| BstDEI | CTNAG | 2 cut(s) | 146, 238 |
| BstF5I | GGATG | 1 cut(s) | 640 |
| BstFNI | CGCG | 1 cut(s) | 617 |
| BstHHI | GCGC | 3 cut(s) | 157, 374, 448 |
| BstMAI | GTCTC | 3 cut(s) | 73, 128, 368 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 161 |
| BstNI | CCWGG | 1 cut(s) | 120 |
| BstNSI | RCATGY | 2 cut(s) | 109, 271 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BstSFI | CTRYAG | 2 cut(s) | 81, 421 |
| BstUI | CGCG | 1 cut(s) | 617 |
| BstV1I | GCAGC | 2 cut(s) | 95, 127 |
| BtsCI | GGATG | 1 cut(s) | 640 |
| BtsIMutI | CAGTG | 1 cut(s) | 357 |
| BtuMI | TCGCGA | 1 cut(s) | 617 |
| Cac8I | GCNNGC | 1 cut(s) | 450 |
| CfoI | GCGC | 3 cut(s) | 157, 374, 448 |
| Cfr10I | RCCGGY | 1 cut(s) | 374 |
| Cfr13I | GGNCC | 2 cut(s) | 39, 133 |
| CseI | GACGC | 1 cut(s) | 323 |
| Csp6I | GTAC | 4 cut(s) | 203, 211, 551, 574 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 148, 183, 565, 600 |
| CviAII | CATG | 7 cut(s) | 36, 106, 130, 206, 268, 571, 622 |
| CviJI | RGCY | 5 cut(s) | 57, 92, 118, 164, 420 |
| CviKI_1 | RGCY | 5 cut(s) | 57, 92, 118, 164, 420 |
| CviQI | GTAC | 4 cut(s) | 203, 211, 551, 574 |
| DdeI | CTNAG | 2 cut(s) | 146, 238 |
| Eam1104I | CTCTTC | 1 cut(s) | 264 |
| EarI | CTCTTC | 1 cut(s) | 264 |
| Eco31I | GGTCTC | 2 cut(s) | 128, 368 |
| Eco47I | GGWCC | 2 cut(s) | 39, 133 |
| EcoRII | CCWGG | 1 cut(s) | 118 |
| FaeI | CATG | 7 cut(s) | 39, 109, 133, 209, 271, 574, 625 |
| FatI | CATG | 7 cut(s) | 35, 105, 129, 205, 267, 570, 621 |
| Fnu4HI | GCNGC | 3 cut(s) | 84, 116, 323 |
| Fsp4HI | GCNGC | 3 cut(s) | 84, 116, 323 |
| GlaI | GCGC | 3 cut(s) | 156, 373, 447 |
| GluI | GCNGC | 3 cut(s) | 84, 116, 323 |
| GsaI | CCCAGC | 1 cut(s) | 329 |
| HapII | CCGG | 1 cut(s) | 375 |
| HgaI | GACGC | 1 cut(s) | 323 |
| HhaI | GCGC | 3 cut(s) | 157, 374, 448 |
| Hin1II | CATG | 7 cut(s) | 39, 109, 133, 209, 271, 574, 625 |
| Hin6I | GCGC | 3 cut(s) | 155, 372, 446 |
| HinP1I | GCGC | 3 cut(s) | 155, 372, 446 |
| HinfI | GANTC | 2 cut(s) | 66, 74 |
| HpaII | CCGG | 1 cut(s) | 375 |
| HphI | GGTGA | 2 cut(s) | 229, 296 |
| Hpy166II | GTNNAC | 2 cut(s) | 170, 235 |
| Hpy188I | TCNGA | 1 cut(s) | 73 |
| Hpy188III | TCNNGA | 2 cut(s) | 263, 616 |
| Hpy8I | GTNNAC | 2 cut(s) | 170, 235 |
| HpyAV | CCTTC | 4 cut(s) | 171, 271, 289, 457 |
| HpyCH4V | TGCA | 5 cut(s) | 83, 115, 129, 430, 607 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 161 |
| HpyF3I | CTNAG | 2 cut(s) | 146, 238 |
| Hsp92II | CATG | 7 cut(s) | 39, 109, 133, 209, 271, 574, 625 |
| HspAI | GCGC | 3 cut(s) | 155, 372, 446 |
| LguI | GCTCTTC | 1 cut(s) | 264 |
| LmnI | GCTCC | 1 cut(s) | 417 |
| LpnPI | CCDG | 7 cut(s) | 39, 105, 132, 311, 345, 388, 617 |
| Lsp1109I | GCAGC | 2 cut(s) | 95, 127 |
| MboII | GAAGA | 3 cut(s) | 134, 251, 535 |
| MhlI | GDGCHC | 1 cut(s) | 259 |
| MluCI | AATT | 3 cut(s) | 504, 556, 590 |
| MlyI | GAGTC | 1 cut(s) | 75 |
| MmeI | TCCRAC | 1 cut(s) | 43 |
| MnlI | CCTC | 4 cut(s) | 22, 88, 382, 618 |
| MroXI | GAANNNNTTC | 1 cut(s) | 545 |
| MslI | CAYNNNNRTG | 2 cut(s) | 110, 272 |
| MspA1I | CMGCKG | 1 cut(s) | 325 |
| MspI | CCGG | 1 cut(s) | 375 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| MvaI | CCWGG | 1 cut(s) | 120 |
| MvnI | CGCG | 1 cut(s) | 617 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 161 |
| NlaIII | CATG | 7 cut(s) | 39, 109, 133, 209, 271, 574, 625 |
| NlaIV | GGNNCC | 1 cut(s) | 135 |
| NruI | TCGCGA | 1 cut(s) | 617 |
| NspI | RCATGY | 2 cut(s) | 109, 271 |
| PciI | ACATGT | 2 cut(s) | 105, 267 |
| PciSI | GCTCTTC | 1 cut(s) | 264 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 464 |
| PdmI | GAANNNNTTC | 1 cut(s) | 545 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| PkrI | GCNGC | 3 cut(s) | 85, 117, 324 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PscI | ACATGT | 2 cut(s) | 105, 267 |
| PsiI | TTATAA | 1 cut(s) | 381 |
| Psp6I | CCWGG | 1 cut(s) | 118 |
| PspFI | CCCAGC | 1 cut(s) | 325 |
| PspGI | CCWGG | 1 cut(s) | 118 |
| PspN4I | GGNNCC | 1 cut(s) | 135 |
| PspPI | GGNCC | 2 cut(s) | 39, 133 |
| PstI | CTGCAG | 1 cut(s) | 85 |
| RruI | TCGCGA | 1 cut(s) | 617 |
| RsaI | GTAC | 4 cut(s) | 204, 212, 552, 575 |
| RsaNI | GTAC | 4 cut(s) | 203, 211, 551, 574 |
| RseI | CAYNNNNRTG | 2 cut(s) | 110, 272 |
| SapI | GCTCTTC | 1 cut(s) | 264 |
| SatI | GCNGC | 3 cut(s) | 84, 116, 323 |
| Sau96I | GGNCC | 2 cut(s) | 39, 133 |
| SchI | GAGTC | 1 cut(s) | 75 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SduI | GDGCHC | 1 cut(s) | 259 |
| SetI | ASST | 4 cut(s) | 33, 124, 282, 422 |
| SfcI | CTRYAG | 2 cut(s) | 81, 421 |
| SinI | GGWCC | 2 cut(s) | 39, 133 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 110, 272 |
| SmlI | CTYRAG | 1 cut(s) | 158 |
| SmoI | CTYRAG | 1 cut(s) | 158 |
| Sse9I | AATT | 3 cut(s) | 504, 556, 590 |
| SsiI | CCGC | 1 cut(s) | 323 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| TaqI | TCGA | 1 cut(s) | 6 |
| TasI | AATT | 3 cut(s) | 504, 556, 590 |
| TatI | WGTACW | 2 cut(s) | 202, 573 |
| TauI | GCSGC | 1 cut(s) | 325 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| TscAI | CASTG | 1 cut(s) | 364 |
| TseI | GCWGC | 2 cut(s) | 83, 115 |
| TspDTI | ATGAA | 4 cut(s) | 24, 24, 290, 536 |
| TspRI | CASTG | 1 cut(s) | 364 |
| VpaK11BI | GGWCC | 2 cut(s) | 39, 133 |
| XapI | RAATTY | 1 cut(s) | 504 |
| XceI | RCATGY | 2 cut(s) | 109, 271 |
| XmnI | GAANNNNTTC | 1 cut(s) | 545 |