Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g12840 |
| malus_domestica | MD15G1256900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871 |
| rosa_multiflora | Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00313860 |
| rosa_rugosa | Rorug02G0091200 |
| rosa_samantha | Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 373 |
| AciI | CCGC | 1 cut(s) | 29 |
| AfaI | GTAC | 1 cut(s) | 114 |
| AflIII | ACRYGT | 2 cut(s) | 105, 167 |
| AgsI | TTSAA | 1 cut(s) | 54 |
| AluBI | AGCT | 2 cut(s) | 57, 92 |
| AluI | AGCT | 2 cut(s) | 57, 92 |
| Alw26I | GTCTC | 3 cut(s) | 73, 288, 348 |
| AoxI | GGCC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 1 cut(s) | 235 |
| AspLEI | GCGC | 2 cut(s) | 373, 375 |
| AspS9I | GGNCC | 2 cut(s) | 39, 267 |
| AvaII | GGWCC | 2 cut(s) | 39, 267 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 120, 153 |
| BauI | CACGAG | 1 cut(s) | 132 |
| BbvI | GCAGC | 1 cut(s) | 222 |
| BccI | CCATC | 1 cut(s) | 239 |
| BcoDI | GTCTC | 3 cut(s) | 73, 288, 348 |
| BfaI | CTAG | 1 cut(s) | 63 |
| BisI | GCNGC | 1 cut(s) | 236 |
| BlsI | GCNGC | 1 cut(s) | 237 |
| Bme18I | GGWCC | 2 cut(s) | 39, 267 |
| BmgT120I | GGNCC | 2 cut(s) | 39, 267 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmsI | GCATC | 2 cut(s) | 16, 325 |
| Bpu10I | CCTNAGC | 1 cut(s) | 18 |
| Bse1I | ACTGG | 1 cut(s) | 42 |
| BseGI | GGATG | 1 cut(s) | 255 |
| BseNI | ACTGG | 1 cut(s) | 42 |
| BsePI | GCGCGC | 1 cut(s) | 371 |
| BseXI | GCAGC | 1 cut(s) | 222 |
| Bsh1236I | CGCG | 1 cut(s) | 373 |
| BshFI | GGCC | 1 cut(s) | 16 |
| BsmAI | GTCTC | 3 cut(s) | 73, 288, 348 |
| BsmI | GAATGC | 1 cut(s) | 288 |
| BsnI | GGCC | 1 cut(s) | 16 |
| BspACI | CCGC | 1 cut(s) | 29 |
| BspANI | GGCC | 1 cut(s) | 16 |
| BspFNI | CGCG | 1 cut(s) | 373 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BsrI | ACTGG | 1 cut(s) | 42 |
| BssHII | GCGCGC | 1 cut(s) | 371 |
| BssSI | CACGAG | 1 cut(s) | 132 |
| Bst2BI | CACGAG | 1 cut(s) | 132 |
| Bst6I | CTCTTC | 1 cut(s) | 193 |
| BstC8I | GCNNGC | 1 cut(s) | 373 |
| BstDEI | CTNAG | 1 cut(s) | 18 |
| BstF5I | GGATG | 1 cut(s) | 255 |
| BstFNI | CGCG | 1 cut(s) | 373 |
| BstHHI | GCGC | 2 cut(s) | 373, 375 |
| BstMAI | GTCTC | 3 cut(s) | 73, 288, 348 |
| BstNSI | RCATGY | 2 cut(s) | 109, 171 |
| BstUI | CGCG | 1 cut(s) | 373 |
| BstV1I | GCAGC | 1 cut(s) | 222 |
| BsuRI | GGCC | 1 cut(s) | 16 |
| BtsCI | GGATG | 1 cut(s) | 255 |
| Cac8I | GCNNGC | 1 cut(s) | 373 |
| CfoI | GCGC | 2 cut(s) | 373, 375 |
| Cfr13I | GGNCC | 2 cut(s) | 39, 267 |
| Csp6I | GTAC | 1 cut(s) | 113 |
| CviAII | CATG | 5 cut(s) | 36, 106, 157, 168, 209 |
| CviJI | RGCY | 4 cut(s) | 16, 57, 92, 118 |
| CviKI_1 | RGCY | 4 cut(s) | 16, 57, 92, 118 |
| CviQI | GTAC | 1 cut(s) | 113 |
| DdeI | CTNAG | 1 cut(s) | 18 |
| Eam1104I | CTCTTC | 1 cut(s) | 193 |
| EarI | CTCTTC | 1 cut(s) | 193 |
| Eco147I | AGGCCT | 1 cut(s) | 16 |
| Eco47I | GGWCC | 2 cut(s) | 39, 267 |
| FaeI | CATG | 5 cut(s) | 39, 109, 160, 171, 212 |
| FatI | CATG | 5 cut(s) | 35, 105, 156, 167, 208 |
| Fnu4HI | GCNGC | 1 cut(s) | 236 |
| FokI | GGATG | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 1 cut(s) | 236 |
| FspBI | CTAG | 1 cut(s) | 63 |
| GlaI | GCGC | 2 cut(s) | 372, 374 |
| GluI | GCNGC | 1 cut(s) | 236 |
| HaeIII | GGCC | 1 cut(s) | 16 |
| HhaI | GCGC | 2 cut(s) | 373, 375 |
| Hin1II | CATG | 5 cut(s) | 39, 109, 160, 171, 212 |
| Hin6I | GCGC | 2 cut(s) | 371, 373 |
| HinP1I | GCGC | 2 cut(s) | 371, 373 |
| HinfI | GANTC | 3 cut(s) | 66, 74, 309 |
| Hpy166II | GTNNAC | 1 cut(s) | 129 |
| Hpy188I | TCNGA | 3 cut(s) | 73, 244, 343 |
| Hpy188III | TCNNGA | 2 cut(s) | 293, 323 |
| Hpy8I | GTNNAC | 1 cut(s) | 129 |
| HpyAV | CCTTC | 1 cut(s) | 258 |
| HpyCH4V | TGCA | 4 cut(s) | 160, 212, 238, 348 |
| HpyF3I | CTNAG | 1 cut(s) | 18 |
| Hsp92II | CATG | 5 cut(s) | 39, 109, 160, 171, 212 |
| HspAI | GCGC | 2 cut(s) | 371, 373 |
| LmnI | GCTCC | 1 cut(s) | 283 |
| LpnPI | CCDG | 1 cut(s) | 55 |
| Lsp1109I | GCAGC | 1 cut(s) | 222 |
| LweI | GCATC | 2 cut(s) | 16, 325 |
| MaeI | CTAG | 1 cut(s) | 63 |
| MaeIII | GTNAC | 2 cut(s) | 170, 323 |
| MboII | GAAGA | 1 cut(s) | 210 |
| MlyI | GAGTC | 2 cut(s) | 75, 303 |
| MnlI | CCTC | 3 cut(s) | 88, 299, 355 |
| Mva1269I | GAATGC | 1 cut(s) | 288 |
| MvnI | CGCG | 1 cut(s) | 373 |
| NlaIII | CATG | 5 cut(s) | 39, 109, 160, 171, 212 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| NmuCI | GTSAC | 1 cut(s) | 323 |
| NspI | RCATGY | 2 cut(s) | 109, 171 |
| PauI | GCGCGC | 1 cut(s) | 371 |
| PceI | AGGCCT | 1 cut(s) | 16 |
| PciI | ACATGT | 2 cut(s) | 105, 167 |
| PctI | GAATGC | 1 cut(s) | 288 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| PkrI | GCNGC | 1 cut(s) | 237 |
| PleI | GAGTC | 2 cut(s) | 74, 303 |
| PpsI | GAGTC | 2 cut(s) | 74, 303 |
| PscI | ACATGT | 2 cut(s) | 105, 167 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PspPI | GGNCC | 2 cut(s) | 39, 267 |
| PteI | GCGCGC | 1 cut(s) | 371 |
| RsaI | GTAC | 1 cut(s) | 114 |
| RsaNI | GTAC | 1 cut(s) | 113 |
| SatI | GCNGC | 1 cut(s) | 236 |
| Sau96I | GGNCC | 2 cut(s) | 39, 267 |
| SchI | GAGTC | 2 cut(s) | 75, 303 |
| SetI | ASST | 2 cut(s) | 59, 94 |
| SfaNI | GCATC | 2 cut(s) | 16, 325 |
| SinI | GGWCC | 2 cut(s) | 39, 267 |
| SseBI | AGGCCT | 1 cut(s) | 16 |
| SsiI | CCGC | 1 cut(s) | 29 |
| SspMI | CTAG | 1 cut(s) | 63 |
| StuI | AGGCCT | 1 cut(s) | 16 |
| TaqI | TCGA | 2 cut(s) | 6, 292 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| TseFI | GTSAC | 1 cut(s) | 323 |
| TseI | GCWGC | 1 cut(s) | 235 |
| Tsp45I | GTSAC | 1 cut(s) | 323 |
| TspDTI | ATGAA | 1 cut(s) | 24 |
| VpaK11BI | GGWCC | 2 cut(s) | 39, 267 |
| XceI | RCATGY | 2 cut(s) | 109, 171 |
| XspI | CTAG | 1 cut(s) | 63 |