Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012561

Physical Location & Seq

Genomic Coordinates Forward (+)

7287629 .. 7288695

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0091200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGACGTTGTCGACGCCTGCGGAGGGAGAGTGACGATTGGTGACGTCTCCAGCAGAGCTGGGCTCAAGCTCAATGAGGCTCAAAACGCTTTGCAGGCTCTCGCTGCCGACACTGAGGGCTTCTTGGAGGTCTCGGATGAAGGCGATGTGCTTTATGTTTTCCCCAAAGATTATCGAGCAAAGCTTCTTGCCAAATCGTTTCGATTGAGAATTGAGCCTCTGCTGGAGAAAGCAAAGGCCGGGACCAAGTATGTAGTGAGGATTTCATTTGGAACTGCCCTCATTGCCTCCATTGTTCTTGTTTATACTACAATCATTGTTGCCCTTTCTTCCAGTAGGAGCGAGGATGACAATCGTGGACGACGTGGAAGATCATATGATTCGTGGTTCACTTTTTACATGAGTCCCTGTGACCTCTTTTGGAGAAGTAGCAGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

146

Amino Acids

16.23

Weight (kDa)

8.58

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12840
malus_domestica	MD15G1256900.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871
rosa_multiflora	Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313860
rosa_rugosa	Rorug02G0091200
rosa_samantha	Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	21
AcyI	GRCGYC	2 cut(s)	15, 45
AfiI	CCNNNNNNNGG	1 cut(s)	24
AjiI	CACGTC	1 cut(s)	365
AluBI	AGCT	3 cut(s)	59, 70, 184
AluI	AGCT	3 cut(s)	59, 70, 184
Alw26I	GTCTC	2 cut(s)	52, 136
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	52, 136
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	243
BmgBI	CACGTC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpmI	CTGGAG	2 cut(s)	34, 245
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	351
BsaHI	GRCGYC	2 cut(s)	15, 45
BsaI	GGTCTC	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	351
BseGI	GGATG	2 cut(s)	142, 352
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	256, 390
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	2 cut(s)	52, 136
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	2 cut(s)	256, 390
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	371
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	371
BssNI	GRCGYC	2 cut(s)	15, 45
Bst4CI	ACNGT	1 cut(s)	438
BstACI	GRCGYC	2 cut(s)	15, 45
BstC8I	GCNNGC	2 cut(s)	19, 96
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	142, 352
BstKTI	GATC	1 cut(s)	374
BstMAI	GTCTC	2 cut(s)	52, 136
BstMBI	GATC	1 cut(s)	371
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 284
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	239
BtgZI	GCGATG	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	142, 352
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	19, 96
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	1 cut(s)	23
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	9 cut(s)	59, 64, 70, 80, 98, 120, 184, 217, 239
CviKI_1	RGCY	9 cut(s)	59, 64, 70, 80, 98, 120, 184, 217, 239
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	373
DpnII	GATC	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	1 cut(s)	403
FaiI	YATR	6 cut(s)	156, 252, 306, 376, 378, 401
FaqI	GGGAC	2 cut(s)	256, 390
FatI	CATG	1 cut(s)	399
FauNDI	CATATG	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	149, 359
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	2 cut(s)	34, 245
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	23
Hin1I	GRCGYC	2 cut(s)	15, 45
Hin1II	CATG	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	380, 403
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	3 cut(s)	13, 359, 390
Hpy188I	TCNGA	1 cut(s)	136
Hpy8I	GTNNAC	3 cut(s)	13, 359, 390
Hpy99I	CGWCG	2 cut(s)	17, 366
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	3 cut(s)	6, 45, 364
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 284
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	3 cut(s)	6, 45, 364
Hsp92I	GRCGYC	2 cut(s)	15, 45
Hsp92II	CATG	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	8 cut(s)	31, 45, 64, 80, 209, 253, 346, 421
Lsp1109I	GCAGC	1 cut(s)	91
MaeII	ACGT	3 cut(s)	6, 45, 364
MaeIII	GTNAC	3 cut(s)	31, 41, 410
MalI	GATC	1 cut(s)	373
MboI	GATC	1 cut(s)	371
MboII	GAAGA	2 cut(s)	321, 381
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	412
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 104, 284
NciI	CCSGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	1 cut(s)	371
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	3 cut(s)	31, 41, 410
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	380
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	243
PsyI	GACNNNGTC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	11
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	371
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	8 cut(s)	9, 48, 61, 72, 132, 186, 367, 417
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	3 cut(s)	9, 48, 367
TaqI	TCGA	3 cut(s)	12, 175, 202
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	380
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	3 cut(s)	31, 41, 410
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	3 cut(s)	31, 41, 410
TspDTI	ATGAA	2 cut(s)	153, 255
TspRI	CASTG	1 cut(s)	118
Tth111I	GACNNNGTC	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	12
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.