Rroxscaffold_4G00313860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012561
Physical Location & Seq
Forward (+)
37606792 .. 37610617
3826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00313860.1

Sequence Viewer

Length: 393 bp
ATGATGAACTCCCCCACCACCTCCTCGGGAAGCGCCTTCGCCACCTCCTCGAGAACCACCCGTGGTGCCCCCGCCGGGAACACCTCCACCGCCACTACTAGAGAAGCGCCTTTCCTCCACCACGAGAAGCACCGACACCATCATGAGAGGTTCCTTCCCCTCCGTGAGAGGAACCCTTTCGCCTACCGAGACCAACCCAATGCTTTCGATGTGCCGGTTGAGACATCTCCTTCTTCCGTTCCCGTGCCGATAGTTGCAGCTGTGACCGAATCAACACCAAAGCACCTTGAGCGAGAAAACCCATCTAGGTCACGATTGTCGGATCTTAATGTTCATGAGTTGAAGCTTCTTGGATGCTCCTACAATCGAGTTGTGTTGGAGTGTGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.4

Weight (kDa)

8.77

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 2 cut(s) 72, 90
AclWI GGATC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 343
AluBI AGCT 2 cut(s) 260, 346
AluI AGCT 2 cut(s) 260, 346
Alw26I GTCTC 2 cut(s) 183, 215
AlwI GGATC 1 cut(s) 330
Ama87I CYCGRG 2 cut(s) 25, 49
ApeKI GCWGC 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 2 cut(s) 35, 109
AsuC2I CCSGG 1 cut(s) 76
AvaI CYCGRG 2 cut(s) 25, 49
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 65
BauI CACGAG 1 cut(s) 122
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 147, 310
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 183, 215
BfaI CTAG 2 cut(s) 99, 306
BfoI RGCGCY 2 cut(s) 36, 110
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 76
BmeT110I CYCGRG 2 cut(s) 25, 49
BmiI GGNNCC 3 cut(s) 67, 152, 173
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 24, 61
BsaXI ACNNNNNCTCC 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 214
BseDI CCNNGG 2 cut(s) 24, 61
BseGI GGATG 1 cut(s) 359
BseLI CCNNNNNNNGG 1 cut(s) 75
BseRI GAGGAG 2 cut(s) 13, 37
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 65
BsiHKCI CYCGRG 2 cut(s) 25, 49
BsiSI CCGG 2 cut(s) 75, 215
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 2 cut(s) 183, 215
Bso31I GGTCTC 1 cut(s) 183
BsoBI CYCGRG 2 cut(s) 25, 49
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 322
BspACI CCGC 2 cut(s) 72, 90
BspHI TCATGA 2 cut(s) 142, 334
BspLI GGNNCC 3 cut(s) 67, 152, 173
BspPI GGATC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 24, 61
BssMI GATC 1 cut(s) 322
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 359
BstH2I RGCGCY 2 cut(s) 36, 110
BstHHI GCGC 2 cut(s) 35, 109
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 2 cut(s) 183, 215
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 74
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 1 cut(s) 359
CciI TCATGA 2 cut(s) 142, 334
CfoI GCGC 2 cut(s) 35, 109
Cfr10I RCCGGY 1 cut(s) 214
CviAII CATG 2 cut(s) 143, 335
CviJI RGCY 2 cut(s) 260, 346
CviKI_1 RGCY 2 cut(s) 260, 346
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eco31I GGTCTC 1 cut(s) 183
Eco88I CYCGRG 2 cut(s) 25, 49
FaeI CATG 2 cut(s) 146, 338
FaiI YATR 2 cut(s) 144, 336
FatI CATG 2 cut(s) 142, 334
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 2 cut(s) 99, 306
GlaI GCGC 2 cut(s) 34, 108
GluI GCNGC 1 cut(s) 258
HaeII RGCGCY 2 cut(s) 36, 110
HapII CCGG 2 cut(s) 75, 215
HhaI GCGC 2 cut(s) 35, 109
Hin1II CATG 2 cut(s) 146, 338
Hin6I GCGC 2 cut(s) 33, 107
HinP1I GCGC 2 cut(s) 33, 107
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 1 cut(s) 269
HpaII CCGG 2 cut(s) 75, 215
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 5 cut(s) 27, 51, 143, 312, 335
HpyAV CCTTC 3 cut(s) 46, 164, 240
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
Hsp92II CATG 2 cut(s) 146, 338
HspAI GCGC 2 cut(s) 33, 107
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 2 cut(s) 88, 228
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 344
MaeI CTAG 2 cut(s) 99, 306
MaeIII GTNAC 2 cut(s) 262, 309
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 1 cut(s) 225
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 70
MmeI TCCRAC 2 cut(s) 300, 357
MnlI CCTC 9 cut(s) 31, 34, 55, 58, 94, 125, 141, 162, 170
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 2 cut(s) 75, 215
MspR9I CCNGG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 76
NdeII GATC 1 cut(s) 322
NlaIII CATG 2 cut(s) 146, 338
NlaIV GGNNCC 3 cut(s) 67, 152, 173
NmuCI GTSAC 2 cut(s) 262, 309
PaeR7I CTCGAG 1 cut(s) 49
PagI TCATGA 2 cut(s) 142, 334
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 67, 152, 173
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 1 cut(s) 70
SetI ASST 8 cut(s) 23, 47, 86, 152, 262, 288, 311, 348
SfaNI GCATC 1 cut(s) 344
Sfr274I CTCGAG 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 49, 287
SmoI CTYRAG 2 cut(s) 49, 287
SsiI CCGC 2 cut(s) 72, 90
SspMI CTAG 2 cut(s) 99, 306
StyD4I CCNGG 1 cut(s) 74
TaqI TCGA 3 cut(s) 50, 207, 367
TaqII GACCGA 1 cut(s) 281
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseFI GTSAC 2 cut(s) 262, 309
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 2 cut(s) 262, 309
TspDTI ATGAA 2 cut(s) 20, 323
TspGWI ACGGA 2 cut(s) 152, 226
XhoI CTCGAG 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 2 cut(s) 99, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.