Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009251

Physical Location & Seq

Genomic Coordinates Reverse (-)

8393838 .. 8395503

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGATGAGAATCAGAAACACTTCGTTTTGGTCCATGGAACTTGCCATGGAGCATGGTGTTGGTACAAGCTTATCCCTCTGCTCCGCGGCGCTGGTCACCGTGTCACTGCTCTGGACCTTGGTGCTTCTGGGATCGACTCCAAGCAGGTGGACGAGGTCCCTTCACTTTGGGATTATGTCAAATCATTGATGGAGTTCATGGCTACTATTCCTCATGATGAGAAGGTCATATTGGTTTGCCATAGCTACGGCGGCCTTCCCATATCTCTAGCCATGGAGAGGTTTCCTCACAAGATTTTGGTTTCAGTCTTTGTCACAGCTTATTTGCCTCATTACAGTTCTCCACCAGGAACTCTCATACAAGAATTCTTGAAGAGGACCTCAGCGGAATCCTTGTTGGATAACCAGTTTACATTTGACAAAAACACAGAAAATCCGGCAATTACTTCTGTTATGTTTGGTCCAAAATACATGGCTGCCAAACTGTACCAGAACTGCAAGTTAGAGGATCTGGAACTAGCTAAACTGTTGCTAAGGCCATCAGGGATGTTCATAGAAGAGTTGAGCAAGGAGTGCCTGCTAACAGAAGCGAAATTCGGGTCAGTGAAGAGAGTTTATGTGGTGTGCCAAGAGGATGAGGTTATGAAGGAAGACTTCCAACGATGGATGATTAAGAGCAATGGTCCGACAGACGAAGTGAAGTTGATCAAGGGTGCTGGTCATATGGTCATGCTATCAAAGCCCCAAGAACTTTGCCAATGCTTATGTGGAGTTGCTGAGGATTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787 GO:0016788 GO:0052689 GO:0080032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

264

Amino Acids

29.65

Weight (kDa)

5.86

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	3 - 244	5.7e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	7 - 248	1.9e-18	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	8 - 252	1.4e-21	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50440 AT4G37140 AT4G37140
fragaria_vesca	FvH4_1g14950
malus_domestica	MD02G1163100.v1.1 MD16G1272500.v1.1
prunus_persica	Prupe.7G140900_v2.0.a1
pyrus_communis	pycom02g12930
rosa_chinensis	RchiOBHm_Chr2g0104001
rosa_laevigata	RLG00000017276
rosa_multiflora	Rmu_co8299591.1_g000001 Rmu_co8302563.1_g000001 Rmu_sc0001720.1_g000016 Rmu_sc0019524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139220
rosa_rugosa	Rorug02G0118400 Rorug02G0118400
rosa_samantha	Rh2AG167800 Rh2BG174800 Rh2CG173500 Rh2DG173300
rosa_wichuraiana	Rw2G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	85, 87, 252, 386
AclWI	GGATC	2 cut(s)	140, 516
AcsI	RAATTY	2 cut(s)	365, 593
AfaI	GTAC	2 cut(s)	65, 488
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	4 cut(s)	70, 246, 320, 521
AluI	AGCT	4 cut(s)	70, 246, 320, 521
AlwI	GGATC	2 cut(s)	140, 516
AoxI	GGCC	2 cut(s)	253, 536
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	2 cut(s)	365, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	6 cut(s)	31, 115, 157, 378, 461, 683
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	6 cut(s)	31, 115, 157, 378, 461, 683
BbsI	GAAGAC	1 cut(s)	657
BbvCI	CCTCAGC	2 cut(s)	382, 777
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	184, 547, 657
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	348
BclI	TGATCA	1 cut(s)	705
BfaI	CTAG	2 cut(s)	269, 518
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	3 cut(s)	88, 253, 477
BlsI	GCNGC	3 cut(s)	89, 254, 478
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	6 cut(s)	31, 115, 157, 378, 461, 683
BmgT120I	GGNCC	6 cut(s)	31, 115, 157, 378, 461, 683
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	3 cut(s)	382, 533, 777
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	5 cut(s)	34, 46, 85, 118, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	685
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	5 cut(s)	34, 46, 85, 118, 273
BseGI	GGATG	4 cut(s)	10, 552, 640, 672
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	2 cut(s)	396, 768
BseNI	ACTGG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	463
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	255, 538
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	255, 538
Bsp143I	GATC	3 cut(s)	132, 508, 705
Bsp19I	CCATGG	3 cut(s)	34, 46, 273
BspACI	CCGC	4 cut(s)	85, 87, 252, 386
BspANI	GGCC	2 cut(s)	255, 538
BspCNI	CTCAG	2 cut(s)	395, 769
BspFNI	CGCG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	159
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	140, 516
BsrDI	GCAATG	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	5 cut(s)	34, 46, 85, 118, 273
BssMI	GATC	3 cut(s)	132, 508, 705
BssT1I	CCWWGG	4 cut(s)	34, 46, 118, 273
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	4 cut(s)	101, 338, 486, 528
Bst6I	CTCTTC	3 cut(s)	368, 552, 602
BstAPI	GCANNNNNTGC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	578
BstDEI	CTNAG	3 cut(s)	382, 533, 777
BstDSI	CCRYGG	4 cut(s)	34, 46, 85, 273
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	4 cut(s)	10, 552, 640, 672
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	135, 511, 708
BstMBI	GATC	3 cut(s)	132, 508, 705
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 573, 739
BstNI	CCWGG	1 cut(s)	348
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	346
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	508
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	255, 538
BtgI	CCRYGG	4 cut(s)	34, 46, 85, 273
BtsCI	GGATG	4 cut(s)	10, 552, 640, 672
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 609
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	578
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	6 cut(s)	31, 115, 157, 378, 461, 683
Cfr42I	CCGCGG	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	64, 487
CviAII	CATG	8 cut(s)	35, 47, 54, 199, 215, 274, 472, 730
CviQI	GTAC	2 cut(s)	64, 487
DdeI	CTNAG	3 cut(s)	382, 533, 777
DpnI	GATC	3 cut(s)	134, 510, 707
DpnII	GATC	3 cut(s)	132, 508, 705
Eam1104I	CTCTTC	3 cut(s)	368, 552, 602
EarI	CTCTTC	3 cut(s)	368, 552, 602
Eco130I	CCWWGG	4 cut(s)	34, 46, 118, 273
Eco47I	GGWCC	6 cut(s)	31, 115, 157, 378, 461, 683
Eco91I	GGTNACC	1 cut(s)	95
EcoO109I	RGGNCCY	2 cut(s)	157, 378
EcoO65I	GGTNACC	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	4 cut(s)	34, 46, 118, 273
ErhI	CCWWGG	4 cut(s)	34, 46, 118, 273
FaeI	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 733
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	8 cut(s)	34, 46, 53, 198, 214, 273, 471, 729
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	3 cut(s)	88, 253, 477
FokI	GGATG	4 cut(s)	17, 559, 647, 679
Fsp4HI	GCNGC	3 cut(s)	88, 253, 477
FspBI	CTAG	2 cut(s)	269, 518
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	88, 253, 477
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	255, 538
HapII	CCGG	1 cut(s)	437
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 733
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	3 cut(s)	10, 137, 389
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	151, 411
Hpy188I	TCNGA	2 cut(s)	15, 687
Hpy188III	TCNNGA	4 cut(s)	113, 215, 370, 512
Hpy8I	GTNNAC	2 cut(s)	151, 411
HpyAV	CCTTC	4 cut(s)	171, 217, 266, 640
HpyCH4III	ACNGT	4 cut(s)	101, 338, 486, 528
HpyCH4V	TGCA	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 573, 739
HpyF3I	CTNAG	3 cut(s)	382, 533, 777
Hsp92II	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 733
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	705
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	132, 508, 705
LmnI	GCTCC	2 cut(s)	50, 87
Lsp1109I	GCAGC	1 cut(s)	463
MaeI	CTAG	2 cut(s)	269, 518
MaeIII	GTNAC	3 cut(s)	95, 103, 313
MalI	GATC	3 cut(s)	134, 510, 707
MboI	GATC	3 cut(s)	132, 508, 705
MboII	GAAGA	4 cut(s)	385, 569, 619, 662
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	3 cut(s)	365, 441, 593
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	3 cut(s)	378, 682, 710
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	2 cut(s)	672, 790
MspA1I	CMGCKG	2 cut(s)	87, 386
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	252, 573, 739
NcoI	CCATGG	3 cut(s)	34, 46, 273
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	3 cut(s)	132, 508, 705
NlaIII	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 733
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	3 cut(s)	95, 103, 313
PagI	TCATGA	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	10, 389
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	89, 254, 478
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	2 cut(s)	157, 378
Psp5II	RGGWCCY	2 cut(s)	157, 378
Psp6I	CCWGG	1 cut(s)	346
PspEI	GGTNACC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	6 cut(s)	31, 115, 157, 378, 461, 683
PspPPI	RGGWCCY	2 cut(s)	157, 378
PsuI	RGATCY	1 cut(s)	508
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	2 cut(s)	65, 488
RsaNI	GTAC	2 cut(s)	64, 487
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	672, 790
SatI	GCNGC	3 cut(s)	88, 253, 477
Sau3AI	GATC	3 cut(s)	132, 508, 705
Sau96I	GGNCC	6 cut(s)	31, 115, 157, 378, 461, 683
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	348
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	6 cut(s)	31, 115, 157, 378, 461, 683
Sse9I	AATT	3 cut(s)	365, 441, 593
SsiI	CCGC	4 cut(s)	85, 87, 252, 386
SspMI	CTAG	2 cut(s)	269, 518
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	4 cut(s)	34, 46, 118, 273
TaaI	ACNGT	4 cut(s)	101, 338, 486, 528
TaqI	TCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	365, 441, 593
TauI	GCSGC	2 cut(s)	90, 255
TfiI	GAWTC	2 cut(s)	10, 389
Tru1I	TTAA	2 cut(s)	672, 790
Tru9I	TTAA	2 cut(s)	672, 790
TscAI	CASTG	2 cut(s)	112, 609
TseFI	GTSAC	3 cut(s)	95, 103, 313
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	3 cut(s)	95, 103, 313
TspDTI	ATGAA	3 cut(s)	187, 541, 659
TspRI	CASTG	2 cut(s)	112, 609
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	6 cut(s)	31, 115, 157, 378, 461, 683
XapI	RAATTY	2 cut(s)	365, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	269, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.