Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009251

Physical Location & Seq

Genomic Coordinates Forward (+)

35493109 .. 35493381

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1272500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAGAATGCAAAGCATTTCGTTTTGGTTCATGGCACTTGCCTCGGAGCATGGTGTTGGTACAAGCTTGTTACCCTACTCCGACATGCCGGCCACCGCGTCACTGCGTTGGACCTCGAGGGTTCTGGGATCCATTCCAACCAGATTCATGAGGTCACTTCCATTTGGCCATTGATGGAGTTCTTGGGTTCTATTCATGAAGATGAGAAGCCTATTTGCCTCATTACACTTCCCTTCCCGGAGTCCTCATACAAGGTCCGCCTACACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787 GO:0016788 GO:0052689 GO:0080032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

91

Amino Acids

10.31

Weight (kDa)

6.42

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50440 AT4G37140 AT4G37140
fragaria_vesca	FvH4_1g14950
malus_domestica	MD02G1163100.v1.1 MD16G1272500.v1.1
prunus_persica	Prupe.7G140900_v2.0.a1
pyrus_communis	pycom02g12930
rosa_chinensis	RchiOBHm_Chr2g0104001
rosa_laevigata	RLG00000017276
rosa_multiflora	Rmu_co8299591.1_g000001 Rmu_co8302563.1_g000001 Rmu_sc0001720.1_g000016 Rmu_sc0019524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139220
rosa_rugosa	Rorug02G0118400 Rorug02G0118400
rosa_samantha	Rh2AG167800 Rh2BG174800 Rh2CG173500 Rh2DG173300
rosa_wichuraiana	Rw2G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	116
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	97, 259
AclWI	GGATC	2 cut(s)	124, 137
AcoI	YGGCCR	2 cut(s)	91, 167
AfaI	GTAC	1 cut(s)	62
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
AlwI	GGATC	2 cut(s)	124, 137
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	91, 167
AspS9I	GGNCC	2 cut(s)	112, 256
AsuC2I	CCSGG	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	112, 256
BalI	TGGCCA	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	129
BccI	CCATC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BcnI	CCSGG	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	112, 256
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	112, 256
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	93, 169
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	90, 239
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	93, 169
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	2 cut(s)	97, 259
BspANI	GGCC	2 cut(s)	93, 169
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	2 cut(s)	148, 196
BspLI	GGNNCC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	124, 137
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	93, 169
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	91
CciI	TCATGA	2 cut(s)	148, 196
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	112, 256
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	5 cut(s)	32, 51, 86, 149, 197
CviJI	RGCY	4 cut(s)	67, 93, 169, 211
CviKI_1	RGCY	4 cut(s)	67, 93, 169, 211
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	2 cut(s)	91, 167
EciI	GGCGGA	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	112, 256
Eco88I	CYCGRG	1 cut(s)	116
FaeI	CATG	5 cut(s)	35, 54, 89, 152, 200
FaiI	YATR	6 cut(s)	33, 52, 87, 150, 198, 250
FatI	CATG	5 cut(s)	31, 50, 85, 148, 196
HaeIII	GGCC	2 cut(s)	93, 169
HapII	CCGG	2 cut(s)	90, 239
HgaI	GACGC	1 cut(s)	88
Hin1II	CATG	5 cut(s)	35, 54, 89, 152, 200
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	2 cut(s)	145, 242
HpaII	CCGG	2 cut(s)	90, 239
Hpy188I	TCNGA	2 cut(s)	47, 83
Hpy188III	TCNNGA	2 cut(s)	149, 197
HpyAV	CCTTC	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	11
Hsp92II	CATG	5 cut(s)	35, 54, 89, 152, 200
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	4 cut(s)	103, 111, 155, 252
MaeIII	GTNAC	3 cut(s)	70, 100, 154
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	212
MflI	RGATCY	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	169
MluNI	TGGCCA	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	3 cut(s)	90, 106, 162
MnlI	CCTC	6 cut(s)	53, 112, 125, 145, 230, 256
Mox20I	TGGCCA	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	169
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	169
MspI	CCGG	2 cut(s)	90, 239
MspR9I	CCNGG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	13
MvnI	CGCG	1 cut(s)	99
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	1 cut(s)	129
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	5 cut(s)	35, 54, 89, 152, 200
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	2 cut(s)	100, 154
NspI	RCATGY	1 cut(s)	89
PaeR7I	CTCGAG	1 cut(s)	116
PagI	TCATGA	2 cut(s)	148, 196
PctI	GAATGC	1 cut(s)	13
PdiI	GCCGGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	237
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	2 cut(s)	112, 256
PspXI	VCTCGAGB	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	112, 256
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	4 cut(s)	69, 117, 156, 258
Sfr274I	CTCGAG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	112, 256
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SsiI	CCGC	2 cut(s)	97, 259
StyD4I	CCNGG	1 cut(s)	237
TaqI	TCGA	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	100, 154
Tsp45I	GTSAC	2 cut(s)	100, 154
TspDTI	ATGAA	4 cut(s)	20, 137, 185, 213
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	112, 256
XceI	RCATGY	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.