Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019524.1

Orthogroup ID

OG0009251

Physical Location & Seq

Genomic Coordinates Forward (+)

8238 .. 9355

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019524.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggatgagaaccaaaaacactttgttctggttcatggaacttgccatggatcatggtgttggtacaaaagcatcgccctactccggggcgctggtcacggtgtcactgctctggaccttggtgcttctgggatcaactccaagcaggtggacgagatcgcttcaatttgggattatgccaagccattgatggagttcatggcttctattcctcatgatgagaaggtcatactggttgggcatagctacggtggccttcctatatctctagccatggagaggtttcctcagaagattttggttgcagtctttgtcacagcctatttgcctcattacagttctccaccaggaactctcatacaagaatacttgaagaggacctcagcggaatccttgttggataaccaatttacattcgacaataacacagaaaatccggcaattacttctgttatgtttggtccaaagtacatggctgccaaactataccagaactgcaagtcagaggacctggaactagctaaactgttgctaaggccatctgggatgttcatagaagaattgatcagcaagaagtgtcggctaacagaagcgaaattcgggtcggtgaagagagtttatgtggtctgcgaagaagatgaggtgatggaggaagacttccaacggtggatgatcaagagcaatggtccgacagacggagtgaaattaattaggggtgctggtcatatggtcatgctatcaaagccccaagaactttgccaatgcttatgtgaagttgcggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787 GO:0016788 GO:0052689 GO:0080032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

261

Amino Acids

29.23

Weight (kDa)

5.79

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50440 AT4G37140 AT4G37140
fragaria_vesca	FvH4_1g14950
malus_domestica	MD02G1163100.v1.1 MD16G1272500.v1.1
prunus_persica	Prupe.7G140900_v2.0.a1
pyrus_communis	pycom02g12930
rosa_chinensis	RchiOBHm_Chr2g0104001
rosa_laevigata	RLG00000017276
rosa_multiflora	Rmu_co8299591.1_g000001 Rmu_co8302563.1_g000001 Rmu_sc0001720.1_g000016 Rmu_sc0019524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139220
rosa_rugosa	Rorug02G0118400 Rorug02G0118400
rosa_samantha	Rh2AG167800 Rh2BG174800 Rh2CG173500 Rh2DG173300
rosa_wichuraiana	Rw2G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	2 cut(s)	386, 779
AclWI	GGATC	2 cut(s)	58, 140
AcsI	RAATTY	1 cut(s)	596
AfaI	GTAC	2 cut(s)	65, 470
AfiI	CCNNNNNNNGG	4 cut(s)	84, 85, 279, 695
AgsI	TTSAA	2 cut(s)	165, 373
AjnI	CCWGG	2 cut(s)	346, 510
AluBI	AGCT	2 cut(s)	246, 521
AluI	AGCT	2 cut(s)	246, 521
AlwI	GGATC	2 cut(s)	58, 140
AoxI	GGCC	2 cut(s)	253, 536
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	596
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AseI	ATTAAT	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	5 cut(s)	115, 378, 461, 508, 686
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	619, 655
AvaII	GGWCC	5 cut(s)	115, 378, 461, 508, 686
BbsI	GAAGAC	1 cut(s)	660
BbvCI	CCTCAGC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	184, 547, 640
BciT130I	CCWGG	2 cut(s)	348, 512
BclI	TGATCA	2 cut(s)	564, 672
BcnI	CCSGG	1 cut(s)	86
BfaI	CTAG	2 cut(s)	269, 518
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	3 cut(s)	86, 348, 512
Bme18I	GGWCC	5 cut(s)	115, 378, 461, 508, 686
BmgT120I	GGNCC	5 cut(s)	115, 378, 461, 508, 686
BmrFI	CCNGG	3 cut(s)	86, 348, 512
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	660
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	2 cut(s)	382, 533
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	4 cut(s)	46, 85, 118, 273
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 85, 279, 695
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	2 cut(s)	348, 512
BseDI	CCNNGG	4 cut(s)	46, 85, 118, 273
BseGI	GGATG	3 cut(s)	10, 552, 675
BseLI	CCNNNNNNNGG	4 cut(s)	84, 85, 279, 695
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	2 cut(s)	302, 396
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	2 cut(s)	255, 538
BsiSI	CCGG	2 cut(s)	85, 437
BslI	CCNNNNNNNGG	4 cut(s)	84, 85, 279, 695
BsnI	GGCC	2 cut(s)	255, 538
Bsp143I	GATC	5 cut(s)	50, 132, 156, 564, 672
Bsp19I	CCATGG	2 cut(s)	46, 273
BspACI	CCGC	2 cut(s)	386, 779
BspANI	GGCC	2 cut(s)	255, 538
BspCNI	CTCAG	2 cut(s)	301, 395
BspHI	TCATGA	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	58, 140
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	4 cut(s)	46, 85, 118, 273
BssMI	GATC	5 cut(s)	50, 132, 156, 564, 672
BssT1I	CCWWGG	3 cut(s)	46, 118, 273
Bst2UI	CCWGG	2 cut(s)	348, 512
Bst4CI	ACNGT	5 cut(s)	101, 251, 338, 528, 666
Bst6I	CTCTTC	2 cut(s)	368, 605
BstDEI	CTNAG	3 cut(s)	288, 382, 533
BstDSI	CCRYGG	2 cut(s)	46, 273
BstF5I	GGATG	3 cut(s)	10, 552, 675
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	5 cut(s)	53, 135, 159, 567, 675
BstMBI	GATC	5 cut(s)	50, 132, 156, 564, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 742
BstNI	CCWGG	2 cut(s)	348, 512
BstSCI	CCNGG	3 cut(s)	84, 346, 510
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	660
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	255, 538
BtgI	CCRYGG	2 cut(s)	46, 273
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	10, 552, 675
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	136
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	5 cut(s)	115, 378, 461, 508, 686
Csp6I	GTAC	2 cut(s)	64, 469
CviAII	CATG	8 cut(s)	35, 47, 54, 199, 215, 274, 472, 733
CviQI	GTAC	2 cut(s)	64, 469
DdeI	CTNAG	3 cut(s)	288, 382, 533
DpnI	GATC	5 cut(s)	52, 134, 158, 566, 674
DpnII	GATC	5 cut(s)	50, 132, 156, 564, 672
Eam1104I	CTCTTC	2 cut(s)	368, 605
EarI	CTCTTC	2 cut(s)	368, 605
Eco130I	CCWWGG	3 cut(s)	46, 118, 273
Eco47I	GGWCC	5 cut(s)	115, 378, 461, 508, 686
EcoO109I	RGGNCCY	2 cut(s)	378, 508
EcoRII	CCWGG	2 cut(s)	346, 510
EcoT14I	CCWWGG	3 cut(s)	46, 118, 273
ErhI	CCWWGG	3 cut(s)	46, 118, 273
FaeI	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 736
FatI	CATG	8 cut(s)	34, 46, 53, 198, 214, 273, 471, 732
FauNDI	CATATG	1 cut(s)	726
FbaI	TGATCA	2 cut(s)	564, 672
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	3 cut(s)	17, 559, 682
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	2 cut(s)	269, 518
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	477
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	255, 538
HapII	CCGG	2 cut(s)	85, 437
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 736
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	85, 437
HphI	GGTGA	2 cut(s)	619, 655
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	291, 505, 690
Hpy188III	TCNNGA	3 cut(s)	113, 215, 676
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	217, 266
HpyCH4III	ACNGT	5 cut(s)	101, 251, 338, 528, 666
HpyCH4V	TGCA	2 cut(s)	305, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 742
HpyF3I	CTNAG	3 cut(s)	288, 382, 533
Hsp92II	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 736
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	2 cut(s)	564, 672
Kzo9I	GATC	5 cut(s)	50, 132, 156, 564, 672
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	269, 518
MaeIII	GTNAC	3 cut(s)	95, 103, 313
MalI	GATC	5 cut(s)	52, 134, 158, 566, 674
MboI	GATC	5 cut(s)	50, 132, 156, 564, 672
MboII	GAAGA	7 cut(s)	304, 385, 569, 622, 644, 647, 665
MluCI	AATT	7 cut(s)	165, 407, 441, 560, 596, 704, 708
MmeI	TCCRAC	3 cut(s)	378, 685, 713
MnlI	CCTC	9 cut(s)	222, 273, 297, 339, 369, 391, 499, 634, 643
MseI	TTAA	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	85, 437
MspR9I	CCNGG	3 cut(s)	86, 348, 512
MvaI	CCWGG	2 cut(s)	348, 512
MwoI	GCNNNNNNNGC	2 cut(s)	252, 742
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	2 cut(s)	46, 273
NdeI	CATATG	1 cut(s)	726
NdeII	GATC	5 cut(s)	50, 132, 156, 564, 672
NlaIII	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 736
NmuCI	GTSAC	3 cut(s)	95, 103, 313
PagI	TCATGA	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	478
PpuMI	RGGWCCY	2 cut(s)	378, 508
PshBI	ATTAAT	1 cut(s)	707
Psp5II	RGGWCCY	2 cut(s)	378, 508
Psp6I	CCWGG	2 cut(s)	346, 510
PspGI	CCWGG	2 cut(s)	346, 510
PspPI	GGNCC	5 cut(s)	115, 378, 461, 508, 686
PspPPI	RGGWCCY	2 cut(s)	378, 508
RsaI	GTAC	2 cut(s)	65, 470
RsaNI	GTAC	2 cut(s)	64, 469
SaqAI	TTAA	1 cut(s)	707
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	5 cut(s)	50, 132, 156, 564, 672
Sau96I	GGNCC	5 cut(s)	115, 378, 461, 508, 686
ScrFI	CCNGG	3 cut(s)	86, 348, 512
SetI	ASST	9 cut(s)	120, 150, 228, 248, 284, 383, 513, 523, 645
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	5 cut(s)	115, 378, 461, 508, 686
Sse9I	AATT	7 cut(s)	165, 407, 441, 560, 596, 704, 708
SsiI	CCGC	2 cut(s)	386, 779
SspMI	CTAG	2 cut(s)	269, 518
StyD4I	CCNGG	3 cut(s)	84, 346, 510
StyI	CCWWGG	3 cut(s)	46, 118, 273
TaaI	ACNGT	5 cut(s)	101, 251, 338, 528, 666
TaqI	TCGA	1 cut(s)	417
TasI	AATT	7 cut(s)	165, 407, 441, 560, 596, 704, 708
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	3 cut(s)	95, 103, 313
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	3 cut(s)	95, 103, 313
TspDTI	ATGAA	3 cut(s)	23, 187, 541
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	5 cut(s)	115, 378, 461, 508, 686
VspI	ATTAAT	1 cut(s)	707
XapI	RAATTY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	2 cut(s)	269, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.