Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009251

Physical Location & Seq

Genomic Coordinates Reverse (-)

15623763 .. 15626128

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGATGAGAACCAAAAACACTTTGTTCTGGTTCATGGAACTTGCCATGGAGCATGGTGTTGGTACAAAAGCATCGCCCTACTCCGGGGCGCTGGTCACCGTGTCACTGCTCTGGACCTTGGTGCTTCTGGGATCAACTCCAAGCAGGTGAACGAGATCGCTTCAATTTGGGATTATGCCAAGCCATTGATGGAGTTCATGGCTTCTATTCCTCATGATGAGAAGGTCATACTGGTTGGGCATAGCTACGGTGGCCTTCCTATATCTCTAGCCATGGAGAGGTTTTCTCAGAAGATTTTGATTGCAGTCTTTGTCACAGCCTATTTGCCTCATTACAGTTCTCCACCAGGAACTCTCATACAAGAATACTTGAAGAGGACCTCAGCGGAATCCTTGTTGGATAACCAATTTACATTCGACAATAACACAGAAAATCCGGCAATTACTTCTGTTATGTTTGGTCCAAAGTACATGGCGGCCAAACTGTACCAGAACTGCAAGTCAGAGGACCTGGAACTAGCTAAACTGTTGCTAAGGCCATCTGGGATGTTCATAGAAGAATTGAGCAAGAAGTGTCGGCTAACAGAAGCGAAATTCGGGTCGGTGAAGAGAGTTTATGTGGTCTGCGAAGAAGATGAGGTGATGGAGGAAGACTTCCAACGGTGGATGATTAAGAGCAATGGTCCGACAGACGGAGTGAAATTAATTAGGGGTGCTGGTCATATGGTCATGCTATCAAAGCCCCAAGAACTATGCCAATGCTTATGTGAAGTTGCGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787 GO:0016788 GO:0052689 GO:0080032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

260

Amino Acids

29.2

Weight (kDa)

6.09

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	3 - 145	3.5e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	7 - 248	6.1e-19	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	8 - 252	6e-21	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50440 AT4G37140 AT4G37140
fragaria_vesca	FvH4_1g14950
malus_domestica	MD02G1163100.v1.1 MD16G1272500.v1.1
prunus_persica	Prupe.7G140900_v2.0.a1
pyrus_communis	pycom02g12930
rosa_chinensis	RchiOBHm_Chr2g0104001
rosa_laevigata	RLG00000017276
rosa_multiflora	Rmu_co8299591.1_g000001 Rmu_co8302563.1_g000001 Rmu_sc0001720.1_g000016 Rmu_sc0019524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139220
rosa_rugosa	Rorug02G0118400 Rorug02G0118400
rosa_samantha	Rh2AG167800 Rh2BG174800 Rh2CG173500 Rh2DG173300
rosa_wichuraiana	Rw2G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	3 cut(s)	386, 476, 776
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	593
AfaI	GTAC	3 cut(s)	65, 470, 488
AfiI	CCNNNNNNNGG	4 cut(s)	84, 85, 279, 692
AgsI	TTSAA	2 cut(s)	165, 373
AjnI	CCWGG	2 cut(s)	346, 510
AluBI	AGCT	2 cut(s)	246, 521
AluI	AGCT	2 cut(s)	246, 521
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	3 cut(s)	253, 477, 536
ApoI	RAATTY	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AseI	ATTAAT	1 cut(s)	704
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	5 cut(s)	115, 378, 461, 508, 683
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	4 cut(s)	89, 160, 616, 652
AvaII	GGWCC	5 cut(s)	115, 378, 461, 508, 683
BbsI	GAAGAC	1 cut(s)	657
BbvCI	CCTCAGC	1 cut(s)	382
BccI	CCATC	3 cut(s)	184, 547, 637
BciT130I	CCWGG	2 cut(s)	348, 512
BcnI	CCSGG	1 cut(s)	86
BfaI	CTAG	2 cut(s)	269, 518
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	3 cut(s)	86, 348, 512
Bme18I	GGWCC	5 cut(s)	115, 378, 461, 508, 683
BmgT120I	GGNCC	5 cut(s)	115, 378, 461, 508, 683
BmrFI	CCNGG	3 cut(s)	86, 348, 512
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	2 cut(s)	382, 533
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	4 cut(s)	46, 85, 118, 273
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 85, 279, 692
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	685
BseBI	CCWGG	2 cut(s)	348, 512
BseDI	CCNNGG	4 cut(s)	46, 85, 118, 273
BseGI	GGATG	3 cut(s)	10, 552, 672
BseLI	CCNNNNNNNGG	4 cut(s)	84, 85, 279, 692
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	2 cut(s)	302, 396
BseNI	ACTGG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	255, 479, 538
BsiSI	CCGG	2 cut(s)	85, 437
BslI	CCNNNNNNNGG	4 cut(s)	84, 85, 279, 692
BsnI	GGCC	3 cut(s)	255, 479, 538
Bsp143I	GATC	2 cut(s)	132, 156
Bsp19I	CCATGG	2 cut(s)	46, 273
BspACI	CCGC	3 cut(s)	386, 476, 776
BspANI	GGCC	3 cut(s)	255, 479, 538
BspCNI	CTCAG	2 cut(s)	301, 395
BspHI	TCATGA	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	4 cut(s)	46, 85, 118, 273
BssMI	GATC	2 cut(s)	132, 156
BssT1I	CCWWGG	3 cut(s)	46, 118, 273
Bst2UI	CCWGG	2 cut(s)	348, 512
Bst4CI	ACNGT	6 cut(s)	101, 251, 338, 486, 528, 663
Bst6I	CTCTTC	2 cut(s)	368, 602
BstDEI	CTNAG	3 cut(s)	288, 382, 533
BstDSI	CCRYGG	2 cut(s)	46, 273
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	3 cut(s)	10, 552, 672
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	135, 159
BstMBI	GATC	2 cut(s)	132, 156
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 739
BstNI	CCWGG	2 cut(s)	348, 512
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	3 cut(s)	84, 346, 510
BstV2I	GAAGAC	1 cut(s)	657
BsuRI	GGCC	3 cut(s)	255, 479, 538
BtgI	CCRYGG	2 cut(s)	46, 273
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	10, 552, 672
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	136
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	5 cut(s)	115, 378, 461, 508, 683
Csp6I	GTAC	3 cut(s)	64, 469, 487
CviAII	CATG	8 cut(s)	35, 47, 54, 199, 215, 274, 472, 730
CviQI	GTAC	3 cut(s)	64, 469, 487
DdeI	CTNAG	3 cut(s)	288, 382, 533
DpnI	GATC	2 cut(s)	134, 158
DpnII	GATC	2 cut(s)	132, 156
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	2 cut(s)	368, 602
EarI	CTCTTC	2 cut(s)	368, 602
Eco130I	CCWWGG	3 cut(s)	46, 118, 273
Eco47I	GGWCC	5 cut(s)	115, 378, 461, 508, 683
Eco91I	GGTNACC	1 cut(s)	95
EcoO109I	RGGNCCY	2 cut(s)	378, 508
EcoO65I	GGTNACC	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	346, 510
EcoT14I	CCWWGG	3 cut(s)	46, 118, 273
ErhI	CCWWGG	3 cut(s)	46, 118, 273
FaeI	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 733
FatI	CATG	8 cut(s)	34, 46, 53, 198, 214, 273, 471, 729
FauNDI	CATATG	1 cut(s)	723
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	3 cut(s)	17, 559, 679
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	2 cut(s)	269, 518
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	477
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	255, 479, 538
HapII	CCGG	2 cut(s)	85, 437
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 733
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	85, 437
HphI	GGTGA	4 cut(s)	89, 160, 616, 652
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	291, 505, 687
Hpy188III	TCNNGA	2 cut(s)	113, 215
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	217, 266
HpyCH4III	ACNGT	6 cut(s)	101, 251, 338, 486, 528, 663
HpyCH4V	TGCA	2 cut(s)	305, 498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 739
HpyF3I	CTNAG	3 cut(s)	288, 382, 533
Hsp92II	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 733
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	132, 156
LmnI	GCTCC	1 cut(s)	50
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	269, 518
MaeIII	GTNAC	3 cut(s)	95, 103, 313
MalI	GATC	2 cut(s)	134, 158
MboI	GATC	2 cut(s)	132, 156
MboII	GAAGA	7 cut(s)	304, 385, 569, 619, 641, 644, 662
MluCI	AATT	7 cut(s)	165, 407, 441, 560, 593, 701, 705
MmeI	TCCRAC	3 cut(s)	378, 682, 710
MnlI	CCTC	8 cut(s)	222, 273, 339, 369, 391, 499, 631, 640
MseI	TTAA	2 cut(s)	672, 704
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	85, 437
MspR9I	CCNGG	3 cut(s)	86, 348, 512
MvaI	CCWGG	2 cut(s)	348, 512
MwoI	GCNNNNNNNGC	2 cut(s)	252, 739
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	2 cut(s)	46, 273
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	2 cut(s)	132, 156
NlaIII	CATG	8 cut(s)	38, 50, 57, 202, 218, 277, 475, 733
NmuCI	GTSAC	3 cut(s)	95, 103, 313
PagI	TCATGA	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	478
PpuMI	RGGWCCY	2 cut(s)	378, 508
PshBI	ATTAAT	1 cut(s)	704
Psp5II	RGGWCCY	2 cut(s)	378, 508
Psp6I	CCWGG	2 cut(s)	346, 510
PspEI	GGTNACC	1 cut(s)	95
PspGI	CCWGG	2 cut(s)	346, 510
PspPI	GGNCC	5 cut(s)	115, 378, 461, 508, 683
PspPPI	RGGWCCY	2 cut(s)	378, 508
RsaI	GTAC	3 cut(s)	65, 470, 488
RsaNI	GTAC	3 cut(s)	64, 469, 487
SaqAI	TTAA	2 cut(s)	672, 704
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	2 cut(s)	132, 156
Sau96I	GGNCC	5 cut(s)	115, 378, 461, 508, 683
ScrFI	CCNGG	3 cut(s)	86, 348, 512
SetI	ASST	9 cut(s)	120, 150, 228, 248, 284, 383, 513, 523, 642
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	5 cut(s)	115, 378, 461, 508, 683
Sse9I	AATT	7 cut(s)	165, 407, 441, 560, 593, 701, 705
SsiI	CCGC	3 cut(s)	386, 476, 776
SspMI	CTAG	2 cut(s)	269, 518
StyD4I	CCNGG	3 cut(s)	84, 346, 510
StyI	CCWWGG	3 cut(s)	46, 118, 273
TaaI	ACNGT	6 cut(s)	101, 251, 338, 486, 528, 663
TaqI	TCGA	1 cut(s)	417
TasI	AATT	7 cut(s)	165, 407, 441, 560, 593, 701, 705
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	672, 704
Tru9I	TTAA	2 cut(s)	672, 704
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	3 cut(s)	95, 103, 313
Tsp45I	GTSAC	3 cut(s)	95, 103, 313
TspDTI	ATGAA	3 cut(s)	23, 187, 541
TspGWI	ACGGA	1 cut(s)	708
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	5 cut(s)	115, 378, 461, 508, 683
VspI	ATTAAT	1 cut(s)	704
XapI	RAATTY	1 cut(s)	593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	2 cut(s)	269, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.