Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001720.1

Orthogroup ID

OG0009251

Physical Location & Seq

Genomic Coordinates Forward (+)

39592 .. 40050

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001720.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggatgagaaccaaaaacactttgttctggttcatggaacttgccatggatcatggtgttggtacaaaagcatcgccctactccggggcgctggtcacggtgtcactgctctggaccttggtgcttctgggatcaactccaagcaggtggacgagatcgcttcaatttgggattatgccaagccattgatggagttcatggcttctattcctcatgatgagaaggtcatactggttgggcatagctacggtggccttcctatatctctagccatggagaggtttcctcagaagattttggttgcagtctttgtcacagcctatttgcctcattacagttctccaccaggaactctcatacaagaagtaagaaaaagctgctgtctttattccaccgctgttaatcttactcacaaattgtcattctgcactctcgtgttactatttgtttatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787 GO:0016788 GO:0052689 GO:0080032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

152

Amino Acids

16.78

Weight (kDa)

7.07

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50440 AT4G37140 AT4G37140
fragaria_vesca	FvH4_1g14950
malus_domestica	MD02G1163100.v1.1 MD16G1272500.v1.1
prunus_persica	Prupe.7G140900_v2.0.a1
pyrus_communis	pycom02g12930
rosa_chinensis	RchiOBHm_Chr2g0104001
rosa_laevigata	RLG00000017276
rosa_multiflora	Rmu_co8299591.1_g000001 Rmu_co8302563.1_g000001 Rmu_sc0001720.1_g000016 Rmu_sc0019524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139220
rosa_rugosa	Rorug02G0118400 Rorug02G0118400
rosa_samantha	Rh2AG167800 Rh2BG174800 Rh2CG173500 Rh2DG173300
rosa_wichuraiana	Rw2G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	2 cut(s)	58, 140
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	84, 85, 279
AgsI	TTSAA	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	346
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	2 cut(s)	246, 378
AluI	AGCT	2 cut(s)	246, 378
AlwI	GGATC	2 cut(s)	58, 140
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	86, 348
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	86, 348
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	4 cut(s)	46, 85, 118, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 85, 279
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	4 cut(s)	46, 85, 118, 273
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	84, 85, 279
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	412
BshFI	GGCC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	3 cut(s)	84, 85, 279
BsnI	GGCC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	50, 132, 156
Bsp19I	CCATGG	2 cut(s)	46, 273
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	58, 140
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	4 cut(s)	46, 85, 118, 273
BssMI	GATC	3 cut(s)	50, 132, 156
BssSI	CACGAG	1 cut(s)	434
BssT1I	CCWWGG	3 cut(s)	46, 118, 273
Bst2BI	CACGAG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	101, 251, 338
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	2 cut(s)	46, 273
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	53, 135, 159
BstMBI	GATC	3 cut(s)	50, 132, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	2 cut(s)	84, 346
BstV1I	GCAGC	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	46, 273
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	136
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	6 cut(s)	35, 47, 54, 199, 215, 274
CviJI	RGCY	7 cut(s)	184, 203, 246, 255, 272, 320, 378
CviKI_1	RGCY	7 cut(s)	184, 203, 246, 255, 272, 320, 378
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	3 cut(s)	52, 134, 158
DpnII	GATC	3 cut(s)	50, 132, 156
Eco130I	CCWWGG	3 cut(s)	46, 118, 273
Eco47I	GGWCC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	3 cut(s)	46, 118, 273
ErhI	CCWWGG	3 cut(s)	46, 118, 273
FaeI	CATG	6 cut(s)	38, 50, 57, 202, 218, 277
FatI	CATG	6 cut(s)	34, 46, 53, 198, 214, 273
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	379
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	6 cut(s)	38, 50, 57, 202, 218, 277
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	113, 215
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	217, 266
HpyCH4III	ACNGT	3 cut(s)	101, 251, 338
HpyCH4V	TGCA	2 cut(s)	305, 429
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	6 cut(s)	38, 50, 57, 202, 218, 277
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	50, 132, 156
LpnPI	CCDG	9 cut(s)	14, 78, 98, 98, 114, 131, 218, 333, 360
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	4 cut(s)	95, 103, 313, 438
MalI	GATC	3 cut(s)	52, 134, 158
MboI	GATC	3 cut(s)	50, 132, 156
MboII	GAAGA	1 cut(s)	304
MluCI	AATT	2 cut(s)	165, 416
MnlI	CCTC	4 cut(s)	222, 273, 297, 339
MseI	TTAA	2 cut(s)	402, 457
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	2 cut(s)	86, 348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	2 cut(s)	46, 273
NdeII	GATC	3 cut(s)	50, 132, 156
NlaIII	CATG	6 cut(s)	38, 50, 57, 202, 218, 277
NmuCI	GTSAC	3 cut(s)	95, 103, 313
OliI	CACNNNNGTG	1 cut(s)	434
PagI	TCATGA	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	402, 457
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	3 cut(s)	50, 132, 156
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	86, 348
SetI	ASST	6 cut(s)	120, 150, 228, 248, 284, 380
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	165, 416
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	84, 346
StyI	CCWWGG	3 cut(s)	46, 118, 273
TaaI	ACNGT	3 cut(s)	101, 251, 338
TasI	AATT	2 cut(s)	165, 416
Tru1I	TTAA	2 cut(s)	402, 457
Tru9I	TTAA	2 cut(s)	402, 457
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	3 cut(s)	95, 103, 313
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	3 cut(s)	95, 103, 313
TspDTI	ATGAA	2 cut(s)	23, 187
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.