Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8302563.1

Orthogroup ID

OG0009251

Physical Location & Seq

Genomic Coordinates Forward (+)

71 .. 629

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8302563.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggaaacaaagtacttgaagaggacctcagcggaatccttgttggataaccaatttacattcgacaataacacagaaaatccggcaattacttctgttatgtttggtccaaagtacatggctgccaaactataccagaactgcaagtcagaggacctggaactagctaaactgttgctaaggccatctgggatgttcatagaagaattgatcagcaagaagtgtcggctaacagaagcgaaattcgggtcggtgaagagagtttatgtggtctgcgaagaagatgaggtgatggaggaagacttccaacggtggatgatcaagagcaatggtccgacagacggagtgaaattaattaggggtgctggtcatatggtcatgctatcaaagccccaagaactttgccaatgcttatgtgaagttgcggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787 GO:0016788 GO:0052689 GO:0080032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

143

Amino Acids

16.33

Weight (kDa)

5.36

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50440 AT4G37140 AT4G37140
fragaria_vesca	FvH4_1g14950
malus_domestica	MD02G1163100.v1.1 MD16G1272500.v1.1
prunus_persica	Prupe.7G140900_v2.0.a1
pyrus_communis	pycom02g12930
rosa_chinensis	RchiOBHm_Chr2g0104001
rosa_laevigata	RLG00000017276
rosa_multiflora	Rmu_co8299591.1_g000001 Rmu_co8302563.1_g000001 Rmu_sc0001720.1_g000016 Rmu_sc0019524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139220
rosa_rugosa	Rorug02G0118400 Rorug02G0118400
rosa_samantha	Rh2AG167800 Rh2BG174800 Rh2CG173500 Rh2DG173300
rosa_wichuraiana	Rw2G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 425
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	2 cut(s)	14, 116
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AseI	ATTAAT	1 cut(s)	353
AspS9I	GGNCC	4 cut(s)	24, 107, 154, 332
AsuHPI	GGTGA	2 cut(s)	265, 301
AvaII	GGWCC	4 cut(s)	24, 107, 154, 332
BbsI	GAAGAC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	2 cut(s)	193, 286
BciT130I	CCWGG	1 cut(s)	158
BclI	TGATCA	2 cut(s)	210, 318
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	4 cut(s)	24, 107, 154, 332
BmgT120I	GGNCC	4 cut(s)	24, 107, 154, 332
BmrFI	CCNGG	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	306
Bpu10I	CCTNAGC	2 cut(s)	28, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	198, 321
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	341
BsnI	GGCC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	210, 318
BspACI	CCGC	2 cut(s)	32, 425
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	334
BssMI	GATC	2 cut(s)	210, 318
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	174, 312
Bst6I	CTCTTC	2 cut(s)	14, 251
BstDEI	CTNAG	2 cut(s)	28, 179
BstF5I	GGATG	2 cut(s)	198, 321
BstKTI	GATC	2 cut(s)	213, 321
BstMBI	GATC	2 cut(s)	210, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	198, 321
Cfr13I	GGNCC	4 cut(s)	24, 107, 154, 332
Csp6I	GTAC	2 cut(s)	13, 115
CviAII	CATG	2 cut(s)	118, 379
CviJI	RGCY	5 cut(s)	122, 167, 184, 229, 391
CviKI_1	RGCY	5 cut(s)	122, 167, 184, 229, 391
CviQI	GTAC	2 cut(s)	13, 115
DdeI	CTNAG	2 cut(s)	28, 179
DpnI	GATC	2 cut(s)	212, 320
DpnII	GATC	2 cut(s)	210, 318
Eam1104I	CTCTTC	2 cut(s)	14, 251
EarI	CTCTTC	2 cut(s)	14, 251
Eco47I	GGWCC	4 cut(s)	24, 107, 154, 332
EcoO109I	RGGNCCY	2 cut(s)	24, 154
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	121, 382
FaiI	YATR	9 cut(s)	101, 119, 133, 200, 267, 372, 374, 380, 415
FatI	CATG	2 cut(s)	117, 378
FauNDI	CATATG	1 cut(s)	372
FbaI	TGATCA	2 cut(s)	210, 318
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	205, 328
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	2 cut(s)	121, 382
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	265, 301
Hpy188I	TCNGA	2 cut(s)	151, 336
Hpy188III	TCNNGA	1 cut(s)	322
HpyCH4III	ACNGT	2 cut(s)	174, 312
HpyCH4V	TGCA	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	2 cut(s)	28, 179
Hsp92II	CATG	2 cut(s)	121, 382
Ksp22I	TGATCA	2 cut(s)	210, 318
Kzo9I	GATC	2 cut(s)	210, 318
LpnPI	CCDG	6 cut(s)	96, 143, 149, 170, 174, 351
Lsp1109I	GCAGC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	164
MalI	GATC	2 cut(s)	212, 320
MboI	GATC	2 cut(s)	210, 318
MboII	GAAGA	6 cut(s)	31, 215, 268, 290, 293, 311
MluCI	AATT	6 cut(s)	53, 87, 206, 242, 350, 354
MmeI	TCCRAC	3 cut(s)	24, 331, 359
MnlI	CCTC	5 cut(s)	15, 37, 145, 280, 289
MseI	TTAA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	388
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	2 cut(s)	210, 318
NlaIII	CATG	2 cut(s)	121, 382
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	124
PpuMI	RGGWCCY	2 cut(s)	24, 154
PshBI	ATTAAT	1 cut(s)	353
Psp5II	RGGWCCY	2 cut(s)	24, 154
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspPI	GGNCC	4 cut(s)	24, 107, 154, 332
PspPPI	RGGWCCY	2 cut(s)	24, 154
RsaI	GTAC	2 cut(s)	14, 116
RsaNI	GTAC	2 cut(s)	13, 115
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	210, 318
Sau96I	GGNCC	4 cut(s)	24, 107, 154, 332
ScaI	AGTACT	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	4 cut(s)	29, 159, 169, 291
SinI	GGWCC	4 cut(s)	24, 107, 154, 332
Sse9I	AATT	6 cut(s)	53, 87, 206, 242, 350, 354
SsiI	CCGC	2 cut(s)	32, 425
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	174, 312
TaqI	TCGA	1 cut(s)	63
TasI	AATT	6 cut(s)	53, 87, 206, 242, 350, 354
TatI	WGTACW	2 cut(s)	12, 114
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	187
TspGWI	ACGGA	1 cut(s)	357
VpaK11BI	GGWCC	4 cut(s)	24, 107, 154, 332
VspI	ATTAAT	1 cut(s)	353
XapI	RAATTY	1 cut(s)	242
XspI	CTAG	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.