Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009251

Physical Location & Seq

Genomic Coordinates Reverse (-)

13910473 .. 13911769

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1163100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTCGCACTGCTTTCTCATAAGCTACTATCAAGGAATATGCAGAATGCAAAGCACTTCGTTTTGGTTCACGGCAGTTGCCTCGGAGCATGGTGTTGGTACAAGCTTGTTGCCCTACTCCGACATGCTGGCCACCGCGTCACCGCGTTGGACCTCGGTGGTTCTGGGATCCATTCCAACCAGATTCACGAGGTCACTTCCATTTGGGATTATGTCCAGCCATTGATGGAGTTCTTGGGTTCTATTCCTGAAGATGAGAAGGTGATATTGGTAGGTCATAGTTATGGCGGCCTTCCTATATCTTTAGCCATGGAGATGTTTCCTCAGAAGATTTCGGTTGCTGTTTTTGTCACAGCCTATTTGCCTCATTACACTTTCCCCCCCGGAGTCCTCATACAAGAATTCTTGAAAAGGACCTCGGCGGAGTCGTTATTGGATTGCCAGTTCACATTTGGACAAAATAACCCGGAAAATCAGTTGACTTCAGTTCTGTTTGGTTCACAATATATGGCAGCCAAATTGTACCAGCACTGCAAACCAGAGGATCTGGAATTAGCTAAAATGTTGATAAGGCCATCTGGGATGTTCTTGGAAGACATGAACAAGGAAGGGTTGCTTACAGAAGCGAAATTCGGGTCGGTAACTAGGGTTTTTGTAGTGTGTGAAGAAGATGAGGTGATGAAAGAAGAATTTCAACGGTGGATGATTGAGAATAGTCCGAATGCAGAAGTGAGATTGATTAGAGAAGCTGGCCATATGGTCATGCTAACAAAGCCTATAGAACTTTGCCAATGCTTATGTGAAGTGGCTATGAAAACACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787 GO:0016788 GO:0052689 GO:0080032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

275

Amino Acids

31.0

Weight (kDa)

5.88

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	18 - 254	2.3e-11	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	19 - 259	2e-18	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	20 - 261	1.5e-20	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50440 AT4G37140 AT4G37140
fragaria_vesca	FvH4_1g14950
malus_domestica	MD02G1163100.v1.1 MD16G1272500.v1.1
prunus_persica	Prupe.7G140900_v2.0.a1
pyrus_communis	pycom02g12930
rosa_chinensis	RchiOBHm_Chr2g0104001
rosa_laevigata	RLG00000017276
rosa_multiflora	Rmu_co8299591.1_g000001 Rmu_co8302563.1_g000001 Rmu_sc0001720.1_g000016 Rmu_sc0019524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139220
rosa_rugosa	Rorug02G0118400 Rorug02G0118400
rosa_samantha	Rh2AG167800 Rh2BG174800 Rh2CG173500 Rh2DG173300
rosa_wichuraiana	Rw2G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	138, 146
AciI	CCGC	4 cut(s)	136, 144, 288, 422
AclWI	GGATC	3 cut(s)	163, 176, 552
AcoI	YGGCCR	2 cut(s)	130, 751
AcsI	RAATTY	3 cut(s)	401, 629, 689
AcuI	CTGAAG	2 cut(s)	270, 468
AfaI	GTAC	2 cut(s)	101, 524
AgsI	TTSAA	2 cut(s)	409, 695
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	25, 106, 557, 749
AluI	AGCT	4 cut(s)	25, 106, 557, 749
AlwI	GGATC	3 cut(s)	163, 176, 552
AoxI	GGCC	4 cut(s)	130, 289, 572, 751
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	3 cut(s)	401, 629, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	620, 652
Asp700I	GAANNNNTTC	1 cut(s)	690
AspS9I	GGNCC	2 cut(s)	151, 414
AsuC2I	CCSGG	2 cut(s)	384, 467
AsuHPI	GGTGA	3 cut(s)	133, 274, 688
AvaII	GGWCC	2 cut(s)	151, 414
BalI	TGGCCA	2 cut(s)	132, 753
BamHI	GGATCC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	600
BbvI	GCAGC	1 cut(s)	524
BccI	CCATC	2 cut(s)	220, 583
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BcnI	CCSGG	2 cut(s)	384, 467
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	777
BisI	GCNGC	2 cut(s)	289, 513
BlsI	GCNGC	2 cut(s)	290, 514
Bme1390I	CCNGG	2 cut(s)	384, 467
Bme18I	GGWCC	2 cut(s)	151, 414
BmgT120I	GGNCC	2 cut(s)	151, 414
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	384, 467
BpiI	GAAGAC	1 cut(s)	600
BpuMI	CCSGG	2 cut(s)	384, 467
BsaJI	CCNNGG	5 cut(s)	82, 154, 309, 382, 417
Bse1I	ACTGG	1 cut(s)	442
BseDI	CCNNGG	5 cut(s)	82, 154, 309, 382, 417
BseGI	GGATG	2 cut(s)	588, 708
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	524
Bsh1236I	CGCG	2 cut(s)	138, 146
BshFI	GGCC	4 cut(s)	132, 291, 574, 753
BsiSI	CCGG	2 cut(s)	384, 467
BsmI	GAATGC	2 cut(s)	52, 727
BsnI	GGCC	4 cut(s)	132, 291, 574, 753
Bsp143I	GATC	2 cut(s)	168, 544
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	4 cut(s)	136, 144, 288, 422
BspANI	GGCC	4 cut(s)	132, 291, 574, 753
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	2 cut(s)	138, 146
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	3 cut(s)	163, 176, 552
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	5 cut(s)	82, 154, 309, 382, 417
BssMI	GATC	2 cut(s)	168, 544
BssSI	CACGAG	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	699
BstC8I	GCNNGC	2 cut(s)	130, 751
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	588, 708
BstFNI	CGCG	2 cut(s)	138, 146
BstKTI	GATC	2 cut(s)	171, 547
BstMBI	GATC	2 cut(s)	168, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	772
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	382, 465
BstSFI	CTRYAG	1 cut(s)	777
BstUI	CGCG	2 cut(s)	138, 146
BstV1I	GCAGC	1 cut(s)	524
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	2 cut(s)	168, 544
BstYI	RGATCY	2 cut(s)	168, 544
BsuRI	GGCC	4 cut(s)	132, 291, 574, 753
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	588, 708
BtsI	GCAGTG	2 cut(s)	8, 529
BtsIMutI	CAGTG	2 cut(s)	8, 529
Cac8I	GCNNGC	2 cut(s)	130, 751
Cfr13I	GGNCC	2 cut(s)	151, 414
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	100, 523
CviAII	CATG	5 cut(s)	90, 125, 310, 598, 763
CviQI	GTAC	2 cut(s)	100, 523
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	2 cut(s)	170, 546
DpnII	GATC	2 cut(s)	168, 544
EaeI	YGGCCR	2 cut(s)	130, 751
EciI	GGCGGA	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	151, 414
Eco57I	CTGAAG	2 cut(s)	270, 468
EcoO109I	RGGNCCY	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	5 cut(s)	93, 128, 313, 601, 766
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FatI	CATG	5 cut(s)	89, 124, 309, 597, 762
FauNDI	CATATG	1 cut(s)	756
Fnu4HI	GCNGC	2 cut(s)	289, 513
FokI	GGATG	2 cut(s)	595, 715
Fsp4HI	GCNGC	2 cut(s)	289, 513
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	2 cut(s)	289, 513
HaeIII	GGCC	4 cut(s)	132, 291, 574, 753
HapII	CCGG	2 cut(s)	384, 467
HgaI	GACGC	1 cut(s)	127
Hin1II	CATG	5 cut(s)	93, 128, 313, 601, 766
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	184, 387, 425
HpaII	CCGG	2 cut(s)	384, 467
HphI	GGTGA	3 cut(s)	133, 274, 688
Hpy166II	GTNNAC	4 cut(s)	70, 447, 480, 500
Hpy188I	TCNGA	4 cut(s)	86, 122, 327, 720
Hpy188III	TCNNGA	4 cut(s)	188, 248, 406, 548
Hpy8I	GTNNAC	4 cut(s)	70, 447, 480, 500
HpyAV	CCTTC	3 cut(s)	253, 302, 602
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4V	TGCA	4 cut(s)	43, 50, 534, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	772
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	5 cut(s)	93, 128, 313, 601, 766
Kzo9I	GATC	2 cut(s)	168, 544
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	1 cut(s)	524
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	4 cut(s)	139, 193, 349, 640
MalI	GATC	2 cut(s)	170, 546
MboI	GATC	2 cut(s)	168, 544
MboII	GAAGA	6 cut(s)	263, 340, 605, 677, 680, 698
MflI	RGATCY	2 cut(s)	168, 544
MlsI	TGGCCA	2 cut(s)	132, 753
MluCI	AATT	5 cut(s)	401, 518, 551, 629, 689
MluNI	TGGCCA	2 cut(s)	132, 753
MlyI	GAGTC	2 cut(s)	396, 434
MmeI	TCCRAC	3 cut(s)	129, 145, 201
MnlI	CCTC	9 cut(s)	92, 164, 184, 333, 375, 401, 427, 535, 667
Mox20I	TGGCCA	2 cut(s)	132, 753
MroXI	GAANNNNTTC	1 cut(s)	690
MscI	TGGCCA	2 cut(s)	132, 753
MslI	CAYNNNNRTG	2 cut(s)	282, 314
Msp20I	TGGCCA	2 cut(s)	132, 753
MspI	CCGG	2 cut(s)	384, 467
MspR9I	CCNGG	2 cut(s)	384, 467
Mva1269I	GAATGC	2 cut(s)	52, 727
MvnI	CGCG	2 cut(s)	138, 146
MwoI	GCNNNNNNNGC	1 cut(s)	772
NciI	CCSGG	2 cut(s)	384, 467
NcoI	CCATGG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	756
NdeII	GATC	2 cut(s)	168, 544
NlaIII	CATG	5 cut(s)	93, 128, 313, 601, 766
NlaIV	GGNNCC	1 cut(s)	170
NmeAIII	GCCGAG	1 cut(s)	398
NmuCI	GTSAC	3 cut(s)	139, 193, 349
NspI	RCATGY	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	425
PctI	GAATGC	2 cut(s)	52, 727
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	290, 514
PleI	GAGTC	2 cut(s)	395, 433
PpsI	GAGTC	2 cut(s)	395, 433
PpuMI	RGGWCCY	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	151, 414
PspPPI	RGGWCCY	1 cut(s)	414
PsuI	RGATCY	2 cut(s)	168, 544
RsaI	GTAC	2 cut(s)	101, 524
RsaNI	GTAC	2 cut(s)	100, 523
RseI	CAYNNNNRTG	2 cut(s)	282, 314
SatI	GCNGC	2 cut(s)	289, 513
Sau3AI	GATC	2 cut(s)	168, 544
Sau96I	GGNCC	2 cut(s)	151, 414
SchI	GAGTC	2 cut(s)	396, 434
ScrFI	CCNGG	2 cut(s)	384, 467
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	2 cut(s)	151, 414
SmiMI	CAYNNNNRTG	2 cut(s)	282, 314
Sse9I	AATT	5 cut(s)	401, 518, 551, 629, 689
SsiI	CCGC	4 cut(s)	136, 144, 288, 422
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	382, 465
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	699
TasI	AATT	5 cut(s)	401, 518, 551, 629, 689
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	184
TscAI	CASTG	2 cut(s)	15, 536
TseFI	GTSAC	3 cut(s)	139, 193, 349
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	3 cut(s)	139, 193, 349
TspDTI	ATGAA	2 cut(s)	614, 695
TspRI	CASTG	2 cut(s)	15, 536
VpaK11BI	GGWCC	2 cut(s)	151, 414
XapI	RAATTY	3 cut(s)	401, 629, 689
XceI	RCATGY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.