Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009251

Physical Location & Seq

Genomic Coordinates Reverse (-)

15200374 .. 15202696

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGATGAGAACCAAAAACACTTTGTTCTGGTTCATGGAACTTGCCATGGAGCATGGTGTTGGTACAAGCTTATAGCCCTACTCCGGGGCGCTGGTCACCGTGTCACTGCTCTGGACCTTGGTGCTTCTGGGATCAACTCCAAGCAGGTGGACGAGGTCGCTTCAATTTGGGATTATGCCAAGCCATTGATGGAGTTCATGGCTTCTATTCCTCATGATGAGAAGGTCATACTGGTTGGGCATAGCTACGGTGGCCTTCCTATATCTCTAGCCATGGAGAGGTTTCCTCAGAAAACTTTGGTTGCAGTCTTTGTCACAGCCTATTTGCCTCATTACAGTTCTCCACCAGGAACTCTCATACAAGAATACTTGAAGAGGACCTCAGCGGAATCCTTGTTGGATAACCAATTTACATTCGACAATAACACAGAAAATCCGGCAATTACTTCTGTTATGTTTGGTCCAAAGTACATGGCTGCCAAACTGTACCAGAACTGCAAGTCAGAGGCAAGTGAAAAACTGCTATTAGCTATTATTTTTCCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016787 GO:0016788 GO:0052689 GO:0080032

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

182

Amino Acids

20.28

Weight (kDa)

6.36

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	3 - 137	2.4e-08	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	7 - 121	4.6e-16	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	8 - 133	1.9e-13	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50440 AT4G37140 AT4G37140
fragaria_vesca	FvH4_1g14950
malus_domestica	MD02G1163100.v1.1 MD16G1272500.v1.1
prunus_persica	Prupe.7G140900_v2.0.a1
pyrus_communis	pycom02g12930
rosa_chinensis	RchiOBHm_Chr2g0104001
rosa_laevigata	RLG00000017276
rosa_multiflora	Rmu_co8299591.1_g000001 Rmu_co8302563.1_g000001 Rmu_sc0001720.1_g000016 Rmu_sc0019524.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139220
rosa_rugosa	Rorug02G0118400 Rorug02G0118400
rosa_samantha	Rh2AG167800 Rh2BG174800 Rh2CG173500 Rh2DG173300
rosa_wichuraiana	Rw2G013120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AciI	CCGC	2 cut(s)	386, 542
AclWI	GGATC	1 cut(s)	140
AfaI	GTAC	3 cut(s)	65, 470, 488
AfiI	CCNNNNNNNGG	3 cut(s)	84, 85, 279
AgsI	TTSAA	2 cut(s)	165, 373
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	3 cut(s)	70, 246, 530
AluI	AGCT	3 cut(s)	70, 246, 530
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	115, 378, 461
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	3 cut(s)	115, 378, 461
BbvCI	CCTCAGC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	86
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	2 cut(s)	86, 348
Bme18I	GGWCC	3 cut(s)	115, 378, 461
BmgT120I	GGNCC	3 cut(s)	115, 378, 461
BmrFI	CCNGG	2 cut(s)	86, 348
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
Bpu10I	CCTNAGC	1 cut(s)	382
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	4 cut(s)	46, 85, 118, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 85, 279
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	4 cut(s)	46, 85, 118, 273
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	84, 85, 279
BseMII	CTCAG	2 cut(s)	302, 396
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	85, 437
BslI	CCNNNNNNNGG	3 cut(s)	84, 85, 279
BsnI	GGCC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	132
Bsp19I	CCATGG	2 cut(s)	46, 273
BspACI	CCGC	2 cut(s)	386, 542
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	301, 395
BspHI	TCATGA	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	4 cut(s)	46, 85, 118, 273
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	3 cut(s)	46, 118, 273
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	4 cut(s)	101, 251, 338, 486
Bst6I	CTCTTC	1 cut(s)	368
BstDEI	CTNAG	2 cut(s)	288, 382
BstDSI	CCRYGG	2 cut(s)	46, 273
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	348
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	84, 346
BstV1I	GCAGC	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	46, 273
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	136
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	115, 378, 461
Csp6I	GTAC	3 cut(s)	64, 469, 487
CviAII	CATG	7 cut(s)	35, 47, 54, 199, 215, 274, 472
CviQI	GTAC	3 cut(s)	64, 469, 487
DdeI	CTNAG	2 cut(s)	288, 382
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	3 cut(s)	46, 118, 273
Eco47I	GGWCC	3 cut(s)	115, 378, 461
Eco91I	GGTNACC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	378
EcoO65I	GGTNACC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	3 cut(s)	46, 118, 273
ErhI	CCWWGG	3 cut(s)	46, 118, 273
FaeI	CATG	7 cut(s)	38, 50, 57, 202, 218, 277, 475
FatI	CATG	7 cut(s)	34, 46, 53, 198, 214, 273, 471
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	477
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	2 cut(s)	85, 437
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	38, 50, 57, 202, 218, 277, 475
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	85, 437
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	291, 505
Hpy188III	TCNNGA	2 cut(s)	113, 215
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	217, 266
HpyCH4III	ACNGT	4 cut(s)	101, 251, 338, 486
HpyCH4V	TGCA	2 cut(s)	305, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	288, 382
Hsp92II	CATG	7 cut(s)	38, 50, 57, 202, 218, 277, 475
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	3 cut(s)	95, 103, 313
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	385
MluCI	AATT	3 cut(s)	165, 407, 441
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	8 cut(s)	148, 222, 273, 297, 339, 369, 391, 499
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	85, 437
MspR9I	CCNGG	2 cut(s)	86, 348
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	2 cut(s)	46, 273
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	7 cut(s)	38, 50, 57, 202, 218, 277, 475
NmuCI	GTSAC	3 cut(s)	95, 103, 313
PagI	TCATGA	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	389
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	478
PpuMI	RGGWCCY	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	346
PspEI	GGTNACC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	346
PspPI	GGNCC	3 cut(s)	115, 378, 461
PspPPI	RGGWCCY	1 cut(s)	378
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	3 cut(s)	65, 470, 488
RsaNI	GTAC	3 cut(s)	64, 469, 487
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	3 cut(s)	115, 378, 461
ScrFI	CCNGG	2 cut(s)	86, 348
SetI	ASST	9 cut(s)	72, 120, 150, 159, 228, 248, 284, 383, 532
SinI	GGWCC	3 cut(s)	115, 378, 461
Sse9I	AATT	3 cut(s)	165, 407, 441
SsiI	CCGC	2 cut(s)	386, 542
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	84, 346
StyI	CCWWGG	3 cut(s)	46, 118, 273
TaaI	ACNGT	4 cut(s)	101, 251, 338, 486
TaqI	TCGA	1 cut(s)	417
TasI	AATT	3 cut(s)	165, 407, 441
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	389
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	3 cut(s)	95, 103, 313
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	3 cut(s)	95, 103, 313
TspDTI	ATGAA	2 cut(s)	23, 187
TspRI	CASTG	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	3 cut(s)	115, 378, 461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.