FvH4_1g16102

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013471
Physical Location & Seq
Reverse (-)
9205308 .. 9207647
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16102.t1

Sequence Viewer

Length: 1365 bp
ATGACTTCTCCTTTCAAATTCACCCGGAATTATCTGGTTTTGAGACCAGACAAAGCTGGTCCGATCAAGCTCGTACAGTTCTTGTGGTCTGGCTATATAGCAGAAGGAGAAGATGCTATGATATTGTGCGCGCAGGGAGAGGAAGAAAACCTCAAACGTAAATGGCTTATATCACTCACCCTCCTGCTTCAAATGATTTTGTTATGGATCGCTAAACCCATGAGAAACTTTGGTTTAGCTTTTGAGTGGTTCCTCAACCTTCCCTCCAGTAACCGAGCCTGGCTTCAGCTCTCTCTTGATCTTTTAACAGGTGACTTGAAGAAAGAGAAAGAATCAGCGAGTTTCATTTCCACTGTTGGACATACAGACAAGAGAGTGAAGTTGGATAGTAGCATCAGCCGGGAAGATGTCAGATATAAACGAGCGCTTTCTGCAATGGCTGCTAAAATAGCATATGAAAACGAAGCCTTCATTAGAGATATGGTCACAAATAAGTGGCAGATGGATCTCATCAAGTTCTATGACTTTTATAACTATTATCAAGAAAAAAACACTACACAAGCCTTCATGCTCCACGATCCTGTTGATGAATTGATCGTAGTGGCATTCAGAGGTACCGAGTTCTTTGATGCAGATGCATGGAGTACTGACCTCGACATTTCCTGGTTCAAATACAGGTGCATTGGGAAAGTCCATGGTGGTTTTATGAAAGCCCTAGGCTTAACCCCAGAAGGTTTTCCTGATGAAGAACCAGAAACAGAGTACCGTTTAGCTTATTACACTCTTAGGAAGCGATTGCGAGATCTCGTGAAAGACAACAACACGAAGTTCATAGTGACTGGCCATAGCTTGGGTGGTGCACTGGCAATTTTGTTTGCAGCGATTTTGGCCTTGCATAATGAAGGTTTGTTGTTGGAAAGATTGGAAGGGGTTTATACGTTCGGGCAGCCAAGAGTTGGGGATAAGGATTTTCAAAGATTCATGGAGAAACAAATGAAAGATCATAATATCAAGTACCAGAGGATCGTTTATAGTCACGATTTGGTTCCTAGGATACCCTTTGATAGTTCTACATTTTTGTTCAAGCATTTTGGTACCTGCCTCTACTATAATAGCCTCTATAAAGAAAAGATACTTAAGGAAGAGCCAAACAAGAATTACTTTGCTCCAATGTTCAAGTACCTAGTTGCTGTTTGGGAGCTTATAAGAAGCTTCATAATTCCATACGTAAAAGGATGGGAGTACAAAGAAACTTGGTTACTCAGGGGGATCAGAGTATTTGGACTCATAATACCAGGTTTTGCAGCTCATAATCCGCATGATTATGTTAATGCAACTCGACTGGCTGAGTCAACTGTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

455

Amino Acids

53.01

Weight (kDa)

8.42

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 200 - 355 6.3e-34 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 531, 1205
Acc36I ACCTGC 1 cut(s) 1106
Acc65I GGTACC 2 cut(s) 614, 1094
AccB1I GGYRCC 2 cut(s) 614, 1094
AccB7I CCANNNNNTGG 2 cut(s) 850, 956
AccII CGCG 1 cut(s) 131
AciI CCGC 1 cut(s) 1316
AclWI GGATC 5 cut(s) 215, 513, 572, 1031, 1277
AcoI YGGCCR 1 cut(s) 841
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 8 cut(s) 75, 616, 646, 764, 1016, 1096, 1181, 1244
AfeI AGCGCT 1 cut(s) 426
AfiI CCNNNNNNNGG 2 cut(s) 850, 956
AflII CTTAAG 1 cut(s) 1136
AgsI TTSAA 7 cut(s) 16, 191, 319, 670, 974, 1084, 1177
AjnI CCWGG 3 cut(s) 278, 662, 1294
AluBI AGCT 9 cut(s) 56, 70, 239, 289, 773, 849, 1201, 1212, 1307
AluI AGCT 9 cut(s) 56, 70, 239, 289, 773, 849, 1201, 1212, 1307
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 858
AlwI GGATC 5 cut(s) 215, 513, 572, 1031, 1277
Aor51HI AGCGCT 1 cut(s) 426
AoxI GGCC 2 cut(s) 841, 888
ApaLI GTGCAC 1 cut(s) 858
ApeKI GCWGC 4 cut(s) 440, 878, 946, 1304
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 735
Asp718I GGTACC 2 cut(s) 614, 1094
AspA2I CCTAGG 2 cut(s) 715, 1049
AspLEI GCGC 3 cut(s) 131, 133, 427
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 2 cut(s) 25, 401
AsuHPI GGTGA 3 cut(s) 13, 169, 323
AvaII GGWCC 1 cut(s) 59
AvrII CCTAGG 2 cut(s) 715, 1049
BaeGI GKGCMC 1 cut(s) 862
BalI TGGCCA 1 cut(s) 843
BanI GGYRCC 2 cut(s) 614, 1094
BauI CACGAG 1 cut(s) 806
Bbv12I GWGCWC 1 cut(s) 862
BbvI GCAGC 4 cut(s) 427, 890, 958, 1316
BccI CCATC 2 cut(s) 496, 1230
BciT130I CCWGG 3 cut(s) 280, 664, 1296
BciVI GTATCC 1 cut(s) 1047
BcnI CCSGG 2 cut(s) 25, 401
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 3 cut(s) 716, 1050, 1184
BfoI RGCGCY 1 cut(s) 428
BfrI CTTAAG 1 cut(s) 1136
BfuAI ACCTGC 1 cut(s) 1106
BfuI GTATCC 1 cut(s) 1047
BglII AGATCT 1 cut(s) 802
BisI GCNGC 4 cut(s) 441, 879, 947, 1305
BlnI CCTAGG 2 cut(s) 715, 1049
BlsI GCNGC 4 cut(s) 442, 880, 948, 1306
BmcAI AGTACT 1 cut(s) 646
Bme1390I CCNGG 5 cut(s) 25, 280, 401, 664, 1296
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 4 cut(s) 251, 616, 1047, 1096
BmrFI CCNGG 5 cut(s) 25, 280, 401, 664, 1296
BmsI GCATC 4 cut(s) 103, 402, 619, 625
BpmI CTGGAG 1 cut(s) 250
BpuMI CCSGG 2 cut(s) 25, 401
BsaAI YACGTR 1 cut(s) 1228
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 3 cut(s) 694, 715, 1049
BsaXI ACNNNNNCTCC 4 cut(s) 165, 195, 248, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 850, 956
Bse1I ACTGG 4 cut(s) 267, 844, 867, 1347
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 3 cut(s) 280, 664, 1296
BseDI CCNNGG 3 cut(s) 694, 715, 1049
BseGI GGATG 1 cut(s) 1241
BseLI CCNNNNNNNGG 2 cut(s) 850, 956
BseMI GCAATG 1 cut(s) 441
BseMII CTCAG 2 cut(s) 1276, 1338
BseNI ACTGG 4 cut(s) 267, 844, 867, 1347
BsePI GCGCGC 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 4 cut(s) 427, 890, 958, 1316
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 843, 890
BshNI GGYRCC 2 cut(s) 614, 1094
BsiHKAI GWGCWC 1 cut(s) 862
BsiSI CCGG 2 cut(s) 25, 400
BslI CCNNNNNNNGG 2 cut(s) 850, 956
BsmAI GTCTC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 2 cut(s) 843, 890
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 862
Bsp19I CCATGG 1 cut(s) 694
BspACI CCGC 1 cut(s) 1316
BspANI GGCC 2 cut(s) 843, 890
BspCNI CTCAG 2 cut(s) 1275, 1339
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 4 cut(s) 251, 616, 1047, 1096
BspMI ACCTGC 1 cut(s) 1106
BspPI GGATC 5 cut(s) 215, 513, 572, 1031, 1277
BspQI GCTCTTC 1 cut(s) 1137
BspT107I GGYRCC 2 cut(s) 614, 1094
BspTI CTTAAG 1 cut(s) 1136
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 4 cut(s) 267, 844, 867, 1347
BssECI CCNNGG 3 cut(s) 694, 715, 1049
BssHII GCGCGC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 806
BssT1I CCWWGG 3 cut(s) 694, 715, 1049
Bst2BI CACGAG 1 cut(s) 806
Bst2UI CCWGG 3 cut(s) 280, 664, 1296
Bst4CI ACNGT 4 cut(s) 78, 355, 767, 1357
Bst6I CTCTTC 1 cut(s) 1137
BstAFI CTTAAG 1 cut(s) 1136
BstAPI GCANNNNNTGC 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 1228
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 3 cut(s) 785, 1262, 1347
BstDSI CCRYGG 1 cut(s) 694
BstF5I GGATG 1 cut(s) 1241
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 428
BstHHI GCGC 3 cut(s) 131, 133, 427
BstMAI GTCTC 1 cut(s) 37
BstMWI GCNNNNNNNGC 4 cut(s) 431, 440, 449, 887
BstNI CCWGG 3 cut(s) 280, 664, 1296
BstSCI CCNGG 5 cut(s) 23, 278, 399, 662, 1294
BstSLI GKGCMC 1 cut(s) 862
BstSNI TACGTA 1 cut(s) 1228
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 4 cut(s) 427, 890, 958, 1316
BstX2I RGATCY 2 cut(s) 505, 802
BstYI RGATCY 2 cut(s) 505, 802
BsuI GTATCC 1 cut(s) 1047
BsuRI GGCC 2 cut(s) 843, 890
BtgI CCRYGG 1 cut(s) 694
BtsCI GGATG 1 cut(s) 1241
BtsIMutI CAGTG 2 cut(s) 351, 860
BveI ACCTGC 1 cut(s) 1106
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 3 cut(s) 131, 133, 427
Cfr13I GGNCC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 1294
Csp6I GTAC 8 cut(s) 74, 615, 645, 763, 1015, 1095, 1180, 1243
CviAII CATG 6 cut(s) 220, 568, 639, 695, 982, 1319
CviQI GTAC 8 cut(s) 74, 615, 645, 763, 1015, 1095, 1180, 1243
DdeI CTNAG 3 cut(s) 785, 1262, 1347
EaeI YGGCCR 1 cut(s) 841
Eam1104I CTCTTC 1 cut(s) 1137
EarI CTCTTC 1 cut(s) 1137
Eco105I TACGTA 1 cut(s) 1228
Eco130I CCWWGG 3 cut(s) 694, 715, 1049
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 59
Eco47III AGCGCT 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 269
EcoRII CCWGG 3 cut(s) 278, 662, 1294
EcoT14I CCWWGG 3 cut(s) 694, 715, 1049
EcoT22I ATGCAT 1 cut(s) 640
ErhI CCWWGG 3 cut(s) 694, 715, 1049
FaeI CATG 6 cut(s) 223, 571, 642, 698, 985, 1322
FalI AAGNNNNNCTT 2 cut(s) 1145, 1177
FatI CATG 6 cut(s) 219, 567, 638, 694, 981, 1318
FauNDI CATATG 1 cut(s) 454
Fnu4HI GCNGC 4 cut(s) 441, 879, 947, 1305
FokI GGATG 1 cut(s) 1248
Fsp4HI GCNGC 4 cut(s) 441, 879, 947, 1305
FspBI CTAG 3 cut(s) 716, 1050, 1184
GlaI GCGC 3 cut(s) 130, 132, 426
GluI GCNGC 4 cut(s) 441, 879, 947, 1305
GsuI CTGGAG 1 cut(s) 250
HaeII RGCGCY 1 cut(s) 428
HaeIII GGCC 2 cut(s) 843, 890
HapII CCGG 2 cut(s) 25, 400
HhaI GCGC 3 cut(s) 131, 133, 427
Hin1II CATG 6 cut(s) 223, 571, 642, 698, 985, 1322
Hin6I GCGC 3 cut(s) 129, 131, 425
HinP1I GCGC 3 cut(s) 129, 131, 425
HincII GTYRAC 1 cut(s) 1353
HindII GTYRAC 1 cut(s) 1353
HindIII AAGCTT 1 cut(s) 1210
HinfI GANTC 4 cut(s) 332, 978, 1284, 1349
HpaII CCGG 2 cut(s) 25, 400
HphI GGTGA 3 cut(s) 13, 169, 323
Hpy166II GTNNAC 2 cut(s) 860, 1353
Hpy188I TCNGA 4 cut(s) 63, 413, 611, 1274
Hpy188III TCNNGA 5 cut(s) 296, 542, 740, 808, 1037
Hpy8I GTNNAC 2 cut(s) 860, 1353
HpyAV CCTTC 7 cut(s) 98, 269, 478, 574, 725, 896, 920
HpyCH4III ACNGT 4 cut(s) 78, 355, 767, 1357
HpyCH4IV ACGT 3 cut(s) 157, 938, 1227
HpyCH4V TGCA 9 cut(s) 434, 632, 638, 681, 860, 878, 895, 1304, 1334
HpyF10VI GCNNNNNNNGC 4 cut(s) 431, 440, 449, 887
HpyF3I CTNAG 3 cut(s) 785, 1262, 1347
HpySE526I ACGT 3 cut(s) 157, 938, 1227
Hsp92II CATG 6 cut(s) 223, 571, 642, 698, 985, 1322
HspAI GCGC 3 cut(s) 129, 131, 425
KpnI GGTACC 2 cut(s) 618, 1098
LguI GCTCTTC 1 cut(s) 1137
LmnI GCTCC 3 cut(s) 576, 1171, 1198
Lsp1109I GCAGC 4 cut(s) 427, 890, 958, 1316
LweI GCATC 4 cut(s) 103, 402, 619, 625
MabI ACCWGGT 1 cut(s) 1294
MaeI CTAG 3 cut(s) 716, 1050, 1184
MaeII ACGT 3 cut(s) 157, 938, 1227
MaeIII GTNAC 6 cut(s) 269, 311, 484, 835, 1034, 1257
MboII GAAGA 6 cut(s) 122, 155, 331, 416, 758, 1154
MflI RGATCY 2 cut(s) 505, 802
MhlI GDGCHC 1 cut(s) 862
MlsI TGGCCA 1 cut(s) 843
MluCI AATT 6 cut(s) 17, 28, 590, 867, 1156, 1218
MluNI TGGCCA 1 cut(s) 843
MlyI GAGTC 2 cut(s) 1278, 1358
MmeI TCCRAC 3 cut(s) 337, 363, 894
Mox20I TGGCCA 1 cut(s) 843
Mph1103I ATGCAT 1 cut(s) 640
MroXI GAANNNNTTC 1 cut(s) 735
MscI TGGCCA 1 cut(s) 843
MseI TTAA 4 cut(s) 305, 722, 1137, 1329
MslI CAYNNNNRTG 1 cut(s) 1323
Msp20I TGGCCA 1 cut(s) 843
MspCI CTTAAG 1 cut(s) 1136
MspI CCGG 2 cut(s) 25, 400
MspR9I CCNGG 5 cut(s) 25, 280, 401, 664, 1296
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 3 cut(s) 280, 664, 1296
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 431, 440, 449, 887
NciI CCSGG 2 cut(s) 25, 401
NcoI CCATGG 1 cut(s) 694
NdeI CATATG 1 cut(s) 454
NlaIII CATG 6 cut(s) 223, 571, 642, 698, 985, 1322
NlaIV GGNNCC 4 cut(s) 251, 616, 1047, 1096
NmuCI GTSAC 4 cut(s) 311, 484, 835, 1034
NsiI ATGCAT 1 cut(s) 640
PauI GCGCGC 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 1137
PctI GAATGC 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 735
PfeI GAWTC 2 cut(s) 332, 978
PflMI CCANNNNNTGG 2 cut(s) 850, 956
PkrI GCNGC 4 cut(s) 442, 880, 948, 1306
PleI GAGTC 2 cut(s) 1278, 1357
PpsI GAGTC 2 cut(s) 1278, 1357
Ppu21I YACGTR 1 cut(s) 1228
PsiI TTATAA 2 cut(s) 531, 1205
Psp6I CCWGG 3 cut(s) 278, 662, 1294
PspGI CCWGG 3 cut(s) 278, 662, 1294
PspN4I GGNNCC 4 cut(s) 251, 616, 1047, 1096
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 2 cut(s) 505, 802
PteI GCGCGC 1 cut(s) 129
RsaI GTAC 8 cut(s) 75, 616, 646, 764, 1016, 1096, 1181, 1244
RsaNI GTAC 8 cut(s) 74, 615, 645, 763, 1015, 1095, 1180, 1243
RseI CAYNNNNRTG 1 cut(s) 1323
SapI GCTCTTC 1 cut(s) 1137
SaqAI TTAA 4 cut(s) 305, 722, 1137, 1329
SatI GCNGC 4 cut(s) 441, 879, 947, 1305
Sau96I GGNCC 1 cut(s) 59
ScaI AGTACT 1 cut(s) 646
SchI GAGTC 2 cut(s) 1278, 1358
ScrFI CCNGG 5 cut(s) 25, 280, 401, 664, 1296
SduI GDGCHC 1 cut(s) 862
SexAI ACCWGGT 1 cut(s) 1294
SfaNI GCATC 4 cut(s) 103, 402, 619, 625
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 1323
SmlI CTYRAG 1 cut(s) 1136
SmoI CTYRAG 1 cut(s) 1136
SnaBI TACGTA 1 cut(s) 1228
Sse9I AATT 6 cut(s) 17, 28, 590, 867, 1156, 1218
SsiI CCGC 1 cut(s) 1316
SspMI CTAG 3 cut(s) 716, 1050, 1184
StyD4I CCNGG 5 cut(s) 23, 278, 399, 662, 1294
StyI CCWWGG 3 cut(s) 694, 715, 1049
TaaI ACNGT 4 cut(s) 78, 355, 767, 1357
TaiI ACGT 3 cut(s) 160, 941, 1230
TaqI TCGA 2 cut(s) 654, 1339
TasI AATT 6 cut(s) 17, 28, 590, 867, 1156, 1218
TatI WGTACW 2 cut(s) 644, 1242
TfiI GAWTC 2 cut(s) 332, 978
Tru1I TTAA 4 cut(s) 305, 722, 1137, 1329
Tru9I TTAA 4 cut(s) 305, 722, 1137, 1329
TscAI CASTG 2 cut(s) 358, 867
TseFI GTSAC 4 cut(s) 311, 484, 835, 1034
TseI GCWGC 4 cut(s) 440, 878, 946, 1304
Tsp45I GTSAC 4 cut(s) 311, 484, 835, 1034
TspRI CASTG 2 cut(s) 358, 867
Van91I CCANNNNNTGG 2 cut(s) 850, 956
Vha464I CTTAAG 1 cut(s) 1136
VneI GTGCAC 1 cut(s) 858
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 851
XmaJI CCTAGG 2 cut(s) 715, 1049
XmnI GAANNNNTTC 1 cut(s) 735
XspI CTAG 3 cut(s) 716, 1050, 1184
ZrmI AGTACT 1 cut(s) 646
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.