Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001051.1

Orthogroup ID

OG0013471

Physical Location & Seq

Genomic Coordinates Reverse (-)

218248 .. 220415

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001051.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgacttctcctgtcgaattcaaaacccagaattatttggttttgaaaccaaacaaggctggtccgatcaagctcgtacaattcttgtgggctggctacatagcggagggagaagatgctatgatattgtgcccaaagggagaggaggaaaatctcaaacgtaaatggcttatatctttcatcctcctgcttcaaatgattctgttatggattgccaatcccatgagaaactttggtttagtttttgagtggttcctcaaccttccttctagtaagcgaaactggcttgagctctctcttgatcttttaacagattatcaaggaagacatactactcaagccttcatgctccatgaccctgttgatcaattgatcgttgtggcattcagaggtaccgagttctttgatgcagatgcatggagtactgacctcgatatttcctggtacgactacaggtgcattgggaaagttcatggtgggtttatgaaagccctaggcttaacccccgaaggttttcctgacaaagaaccagaactagacgctccgtaccctttagcttactacactctcaggaatcaattgcgagatctcgtgaaagacaccaataacacgaaattcatagtgaccggccatagcttgggtggtgcactggcaattttgtttgcagcaattttggcattgcataaggaagatttgttgttggaaagattgcaaggggtttatacgttcgggcagccacgagttggggataaggactttcaaggattcatggagaaacaaatgaaaaatcataagatcaagtatcagaggatcgtttatagtaacgatttggttcctaggataccctttgatagttctacatttttgttcaagcattttgggacatgcctctactataacagcctgtataaagaaaagatgcttacagaagagccaaacaagaattactttgctccaaaggaggcaatattcaagtacctagttgctgcttgggagctcataagaagcttcataattccacacgtagaaggatgggagtacaaagaaacttggttactcaaggggattagggtatttggactcataataccaggttttgcagctcataatccccatgattatgttaatgcaacccgactggctgagtcagctgtgaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

386

Amino Acids

44.66

Weight (kDa)

6.81

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45201 AT1G45201 AT1G45201
fragaria_vesca	FvH4_1g16102
rosa_chinensis	RchiOBHm_Chr2g0105731 RchiOBHm_Chr2g0105741
rosa_laevigata	RLG00000017454 RLG00000017455 RLG00000028698
rosa_multiflora	Rmu_sc0001051.1_g000063 Rmu_sc0021235.1_g000003
rosa_roxburghii	Rroxscaffold_2G00137940
rosa_rugosa	Rorug02G0129900
rosa_samantha	Rh2AG181300 Rh2BG190400 Rh2CG185500 Rh2DG187300
rosa_wichuraiana	Rw2G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	2 cut(s)	637, 743
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	17, 614
AfaI	GTAC	7 cut(s)	78, 394, 424, 446, 548, 977, 1040
AfiI	CCNNNNNNNGG	2 cut(s)	637, 743
AflIII	ACRYGT	1 cut(s)	1021
AgsI	TTSAA	6 cut(s)	22, 46, 194, 761, 871, 973
AjnI	CCWGG	2 cut(s)	440, 1090
AluBI	AGCT	8 cut(s)	73, 292, 557, 636, 997, 1008, 1103, 1151
AluI	AGCT	8 cut(s)	73, 292, 557, 636, 997, 1008, 1103, 1151
Alw21I	GWGCWC	3 cut(s)	294, 649, 999
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	818
AoxI	GGCC	1 cut(s)	628
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	4 cut(s)	665, 733, 986, 1100
ApoI	RAATTY	2 cut(s)	17, 614
Asp700I	GAANNNNTTC	1 cut(s)	513
Asp718I	GGTACC	1 cut(s)	392
AspA2I	CCTAGG	2 cut(s)	493, 836
AspS9I	GGNCC	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	62
AvrII	CCTAGG	2 cut(s)	493, 836
BaeGI	GKGCMC	2 cut(s)	134, 649
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	294, 999
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BauI	CACGAG	2 cut(s)	590, 738
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	3 cut(s)	294, 649, 999
BbvI	GCAGC	4 cut(s)	677, 745, 973, 1112
BccI	CCATC	1 cut(s)	1026
BciT130I	CCWGG	2 cut(s)	442, 1092
BciVI	GTATCC	1 cut(s)	834
BclI	TGATCA	1 cut(s)	364
BfaI	CTAG	5 cut(s)	270, 494, 536, 837, 980
BfmI	CTRYAG	1 cut(s)	451
BfuI	GTATCC	1 cut(s)	834
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	4 cut(s)	666, 734, 987, 1101
BlnI	CCTAGG	2 cut(s)	493, 836
BlsI	GCNGC	4 cut(s)	667, 735, 988, 1102
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	442, 1092
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	3 cut(s)	254, 394, 834
BmrFI	CCNGG	2 cut(s)	442, 1092
BmsI	GCATC	4 cut(s)	106, 397, 403, 909
BpiI	GAAGAC	1 cut(s)	331
BpuEI	CTTGAG	3 cut(s)	308, 321, 1043
BsaAI	YACGTR	1 cut(s)	1024
BsaJI	CCNNGG	2 cut(s)	493, 836
Bsc4I	CCNNNNNNNGG	2 cut(s)	637, 743
Bse118I	RCCGGY	1 cut(s)	626
Bse1I	ACTGG	3 cut(s)	287, 654, 1143
Bse3DI	GCAATG	1 cut(s)	677
BseBI	CCWGG	2 cut(s)	442, 1092
BseDI	CCNNGG	2 cut(s)	493, 836
BseGI	GGATG	2 cut(s)	180, 1037
BseLI	CCNNNNNNNGG	2 cut(s)	637, 743
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	2 cut(s)	583, 1134
BseNI	ACTGG	3 cut(s)	287, 654, 1143
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	2 cut(s)	134, 649
BseXI	GCAGC	4 cut(s)	677, 745, 973, 1112
BshFI	GGCC	1 cut(s)	630
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	3 cut(s)	294, 649, 999
BsiSI	CCGG	1 cut(s)	627
BslFI	GGGAC	1 cut(s)	895
BslI	CCNNNNNNNGG	2 cut(s)	637, 743
BsmFI	GGGAC	1 cut(s)	895
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	630
Bsp1286I	GDGCHC	4 cut(s)	134, 294, 649, 999
Bsp143I	GATC	7 cut(s)	66, 301, 364, 372, 586, 795, 810
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	2 cut(s)	582, 1135
BspLI	GGNNCC	3 cut(s)	254, 394, 834
BspPI	GGATC	1 cut(s)	818
BspQI	GCTCTTC	1 cut(s)	924
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	677
BsrFI	RCCGGY	1 cut(s)	626
BsrI	ACTGG	3 cut(s)	287, 654, 1143
BssAI	RCCGGY	1 cut(s)	626
BssECI	CCNNGG	2 cut(s)	493, 836
BssMI	GATC	7 cut(s)	66, 301, 364, 372, 586, 795, 810
BssSI	CACGAG	2 cut(s)	590, 738
BssT1I	CCWWGG	2 cut(s)	493, 836
Bst2BI	CACGAG	2 cut(s)	590, 738
Bst2UI	CCWGG	2 cut(s)	442, 1092
Bst6I	CTCTTC	1 cut(s)	924
BstBAI	YACGTR	1 cut(s)	1024
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	569, 1143
BstF5I	GGATG	2 cut(s)	180, 1037
BstKTI	GATC	7 cut(s)	69, 304, 367, 375, 589, 798, 813
BstMBI	GATC	7 cut(s)	66, 301, 364, 372, 586, 795, 810
BstMWI	GCNNNNNNNGC	3 cut(s)	283, 674, 1148
BstNI	CCWGG	2 cut(s)	442, 1092
BstNSI	RCATGY	1 cut(s)	888
BstSCI	CCNGG	2 cut(s)	440, 1090
BstSFI	CTRYAG	1 cut(s)	451
BstSLI	GKGCMC	2 cut(s)	134, 649
BstV1I	GCAGC	4 cut(s)	677, 745, 973, 1112
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuI	GTATCC	1 cut(s)	834
BsuRI	GGCC	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	180, 1037
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	626
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	1 cut(s)	548
CsiI	ACCWGGT	1 cut(s)	1090
Csp6I	GTAC	7 cut(s)	77, 393, 423, 445, 547, 976, 1039
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviAII	CATG	8 cut(s)	223, 346, 353, 417, 473, 769, 885, 1115
CviQI	GTAC	7 cut(s)	77, 393, 423, 445, 547, 976, 1039
DdeI	CTNAG	2 cut(s)	569, 1143
DpnI	GATC	7 cut(s)	68, 303, 366, 374, 588, 797, 812
DpnII	GATC	7 cut(s)	66, 301, 364, 372, 586, 795, 810
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	924
EarI	CTCTTC	1 cut(s)	924
Ecl136II	GAGCTC	2 cut(s)	292, 997
Eco130I	CCWWGG	2 cut(s)	493, 836
Eco24I	GRGCYC	2 cut(s)	294, 999
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	2 cut(s)	292, 997
EcoICRI	GAGCTC	2 cut(s)	292, 997
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	440, 1090
EcoT14I	CCWWGG	2 cut(s)	493, 836
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	2 cut(s)	294, 999
ErhI	CCWWGG	2 cut(s)	493, 836
FaeI	CATG	8 cut(s)	226, 349, 356, 420, 476, 772, 888, 1118
FalI	AAGNNNNNCTT	2 cut(s)	932, 964
FaqI	GGGAC	1 cut(s)	895
FatI	CATG	8 cut(s)	222, 345, 352, 416, 472, 768, 884, 1114
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	666, 734, 987, 1101
FokI	GGATG	2 cut(s)	167, 1044
FriOI	GRGCYC	2 cut(s)	294, 999
Fsp4HI	GCNGC	4 cut(s)	666, 734, 987, 1101
FspBI	CTAG	5 cut(s)	270, 494, 536, 837, 980
GluI	GCNGC	4 cut(s)	666, 734, 987, 1101
HaeIII	GGCC	1 cut(s)	630
HapII	CCGG	1 cut(s)	627
HgaI	GACGC	1 cut(s)	548
Hin1II	CATG	8 cut(s)	226, 349, 356, 420, 476, 772, 888, 1118
HindIII	AAGCTT	1 cut(s)	1006
HinfI	GANTC	5 cut(s)	199, 574, 765, 1080, 1145
HpaII	CCGG	1 cut(s)	627
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	3 cut(s)	66, 389, 807
Hpy188III	TCNNGA	4 cut(s)	299, 518, 571, 592
Hpy8I	GTNNAC	1 cut(s)	647
HpyAV	CCTTC	5 cut(s)	272, 276, 352, 503, 1022
HpyCH4IV	ACGT	3 cut(s)	160, 725, 1023
HpyCH4V	TGCA	9 cut(s)	410, 416, 459, 647, 665, 682, 712, 1100, 1130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	283, 674, 1148
HpyF3I	CTNAG	2 cut(s)	569, 1143
HpySE526I	ACGT	3 cut(s)	160, 725, 1023
Hsp92II	CATG	8 cut(s)	226, 349, 356, 420, 476, 772, 888, 1118
KpnI	GGTACC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	7 cut(s)	66, 301, 364, 372, 586, 795, 810
LguI	GCTCTTC	1 cut(s)	924
LmnI	GCTCC	4 cut(s)	354, 547, 958, 994
Lsp1109I	GCAGC	4 cut(s)	677, 745, 973, 1112
LweI	GCATC	4 cut(s)	106, 397, 403, 909
MabI	ACCWGGT	1 cut(s)	1090
MaeI	CTAG	5 cut(s)	270, 494, 536, 837, 980
MaeII	ACGT	3 cut(s)	160, 725, 1023
MaeIII	GTNAC	3 cut(s)	622, 821, 1053
MalI	GATC	7 cut(s)	68, 303, 366, 374, 588, 797, 812
MboI	GATC	7 cut(s)	66, 301, 364, 372, 586, 795, 810
MboII	GAAGA	4 cut(s)	125, 336, 701, 941
MfeI	CAATTG	2 cut(s)	368, 578
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	4 cut(s)	134, 294, 649, 999
MlyI	GAGTC	2 cut(s)	1074, 1154
MmeI	TCCRAC	1 cut(s)	681
Mph1103I	ATGCAT	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	513
MseI	TTAA	3 cut(s)	308, 500, 1125
MslI	CAYNNNNRTG	1 cut(s)	1119
MspA1I	CMGCKG	1 cut(s)	1151
MspI	CCGG	1 cut(s)	627
MspR9I	CCNGG	2 cut(s)	442, 1092
MunI	CAATTG	2 cut(s)	368, 578
Mva1269I	GAATGC	1 cut(s)	383
MvaI	CCWGG	2 cut(s)	442, 1092
MwoI	GCNNNNNNNGC	3 cut(s)	283, 674, 1148
NdeII	GATC	7 cut(s)	66, 301, 364, 372, 586, 795, 810
NlaIII	CATG	8 cut(s)	226, 349, 356, 420, 476, 772, 888, 1118
NlaIV	GGNNCC	3 cut(s)	254, 394, 834
NmuCI	GTSAC	1 cut(s)	622
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	888
PciSI	GCTCTTC	1 cut(s)	924
PctI	GAATGC	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	199, 574, 765
PflMI	CCANNNNNTGG	2 cut(s)	637, 743
PkrI	GCNGC	4 cut(s)	667, 735, 988, 1102
PleI	GAGTC	2 cut(s)	1074, 1153
PpsI	GAGTC	2 cut(s)	1074, 1153
Ppu21I	YACGTR	1 cut(s)	1024
Psp124BI	GAGCTC	2 cut(s)	294, 999
Psp6I	CCWGG	2 cut(s)	440, 1090
PspGI	CCWGG	2 cut(s)	440, 1090
PspN4I	GGNNCC	3 cut(s)	254, 394, 834
PspPI	GGNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	586
PvuII	CAGCTG	1 cut(s)	1151
RsaI	GTAC	7 cut(s)	78, 394, 424, 446, 548, 977, 1040
RsaNI	GTAC	7 cut(s)	77, 393, 423, 445, 547, 976, 1039
RseI	CAYNNNNRTG	1 cut(s)	1119
SacI	GAGCTC	2 cut(s)	294, 999
SapI	GCTCTTC	1 cut(s)	924
SaqAI	TTAA	3 cut(s)	308, 500, 1125
SatI	GCNGC	4 cut(s)	666, 734, 987, 1101
Sau3AI	GATC	7 cut(s)	66, 301, 364, 372, 586, 795, 810
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	2 cut(s)	1074, 1154
ScrFI	CCNGG	2 cut(s)	442, 1092
SduI	GDGCHC	4 cut(s)	134, 294, 649, 999
SexAI	ACCWGGT	1 cut(s)	1090
SfaNI	GCATC	4 cut(s)	106, 397, 403, 909
SfcI	CTRYAG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	1119
SmlI	CTYRAG	3 cut(s)	287, 336, 1058
SmoI	CTYRAG	3 cut(s)	287, 336, 1058
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	969
SspMI	CTAG	5 cut(s)	270, 494, 536, 837, 980
SstI	GAGCTC	2 cut(s)	294, 999
StyD4I	CCNGG	2 cut(s)	440, 1090
StyI	CCWWGG	2 cut(s)	493, 836
TaiI	ACGT	3 cut(s)	163, 728, 1026
TaqI	TCGA	2 cut(s)	15, 432
TatI	WGTACW	2 cut(s)	422, 1038
TfiI	GAWTC	3 cut(s)	199, 574, 765
Tru1I	TTAA	3 cut(s)	308, 500, 1125
Tru9I	TTAA	3 cut(s)	308, 500, 1125
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	4 cut(s)	665, 733, 986, 1100
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	8 cut(s)	169, 334, 461, 500, 607, 757, 797, 1000
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	1 cut(s)	654
Van91I	CCANNNNNTGG	2 cut(s)	637, 743
VneI	GTGCAC	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	17, 614
XceI	RCATGY	1 cut(s)	888
XcmI	CCANNNNNNNNNTGG	1 cut(s)	638
XmaJI	CCTAGG	2 cut(s)	493, 836
XmnI	GAANNNNTTC	1 cut(s)	513
XspI	CTAG	5 cut(s)	270, 494, 536, 837, 980
ZrmI	AGTACT	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.