Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013471

Physical Location & Seq

Genomic Coordinates Reverse (-)

17403655 .. 17404398

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACTTCTCCTGTCGAATTCAAAACCCAGAATTATTTGGTTTTGAAACCAAACAAGGCTGGTCCGATCAAGCTCGTACAATTCTTGTGGGCTGGCTACATAGCGGAGGGAGAAGATGCTATGATTTTGTGCCCAAAGGGAGAGGAGGAAAATCTCAAACGTAAATGGCTTATATCTTTCATCCTCCTGCTTCAAATGATTCTGTTATGGATTGCCAAACCCATGAGAAACTTTGGTTTAGTTTTTGAGTGGTTCCTCAACCTTCCTTCTAGTAAGCGAAACTGGCTTGAGCTCTCTCTTGATCTTTTAACAGGTGACATAAAGAAAGAGAAAGACTCAGCGAGTTTCATTTCCACTGTTGGACATACAGACAAGAGAGTGAAGTTGGATAGTAGCATCAGCCGGTTAGATGTCAGATATAGAAGAGCACTCTATGCAATGGCTGCTAAAATAGCATATGAGAACCAAGCCTTCATTGAAACTACTGTAAAAAATCATTGGAAGGTAAAATACATGTATGATGTTCGTGCGGAAAAACAATATAAATTGATGAGTTTGTATCCTGTTGAAATCCACAAATTTGAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

196

Amino Acids

23.02

Weight (kDa)

9.42

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45201 AT1G45201 AT1G45201
fragaria_vesca	FvH4_1g16102
rosa_chinensis	RchiOBHm_Chr2g0105731 RchiOBHm_Chr2g0105741
rosa_laevigata	RLG00000017454 RLG00000017455 RLG00000028698
rosa_multiflora	Rmu_sc0001051.1_g000063 Rmu_sc0021235.1_g000003
rosa_roxburghii	Rroxscaffold_2G00137940
rosa_rugosa	Rorug02G0129900
rosa_samantha	Rh2AG181300 Rh2BG190400 Rh2CG185500 Rh2DG187300
rosa_wichuraiana	Rw2G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 530
AcsI	RAATTY	2 cut(s)	17, 578
AfaI	GTAC	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	6 cut(s)	22, 46, 194, 479, 569, 584
AluBI	AGCT	2 cut(s)	73, 292
AluI	AGCT	2 cut(s)	73, 292
Alw21I	GWGCWC	2 cut(s)	294, 430
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	17, 578
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	294
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
Bbv12I	GWGCWC	2 cut(s)	294, 430
BbvI	GCAGC	1 cut(s)	430
BciVI	GTATCC	1 cut(s)	570
BfaI	CTAG	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	570
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	254
BmsI	GCATC	2 cut(s)	106, 405
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpuEI	CTTGAG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	294, 430
BsiSI	CCGG	1 cut(s)	403
Bsp1286I	GDGCHC	3 cut(s)	134, 294, 430
Bsp143I	GATC	2 cut(s)	66, 301
BspACI	CCGC	2 cut(s)	104, 530
BspCNI	CTCAG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	402
BssMI	GATC	2 cut(s)	66, 301
Bst4CI	ACNGT	2 cut(s)	358, 487
Bst6I	CTCTTC	1 cut(s)	418
BstAPI	GCANNNNNTGC	2 cut(s)	434, 443
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	69, 304
BstMBI	GATC	2 cut(s)	66, 301
BstMWI	GCNNNNNNNGC	4 cut(s)	283, 434, 443, 452
BstNSI	RCATGY	1 cut(s)	517
BstSLI	GKGCMC	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	77
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviAII	CATG	2 cut(s)	223, 514
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	2 cut(s)	68, 303
DpnII	GATC	2 cut(s)	66, 301
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	2 cut(s)	226, 517
FatI	CATG	2 cut(s)	222, 513
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	1 cut(s)	444
HapII	CCGG	1 cut(s)	403
Hin1II	CATG	2 cut(s)	226, 517
HinfI	GANTC	2 cut(s)	199, 335
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	66, 416
Hpy188III	TCNNGA	1 cut(s)	299
HpyAV	CCTTC	4 cut(s)	272, 276, 481, 496
HpyCH4III	ACNGT	2 cut(s)	358, 487
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	283, 434, 443, 452
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	226, 517
Kzo9I	GATC	2 cut(s)	66, 301
LguI	GCTCTTC	1 cut(s)	418
LpnPI	CCDG	9 cut(s)	24, 41, 45, 78, 200, 268, 297, 416, 576
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	2 cut(s)	106, 405
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	2 cut(s)	68, 303
MboI	GATC	2 cut(s)	66, 301
MboII	GAAGA	2 cut(s)	125, 435
MhlI	GDGCHC	3 cut(s)	134, 294, 430
MluCI	AATT	5 cut(s)	17, 31, 80, 545, 578
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	340, 366
MnlI	CCTC	5 cut(s)	100, 136, 139, 194, 266
MseI	TTAA	2 cut(s)	308, 589
MspI	CCGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	4 cut(s)	283, 434, 443, 452
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	2 cut(s)	66, 301
NlaIII	CATG	2 cut(s)	226, 517
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	1 cut(s)	517
PciI	ACATGT	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PscI	ACATGT	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	418
SaqAI	TTAA	2 cut(s)	308, 589
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	2 cut(s)	66, 301
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	134, 294, 430
SetI	ASST	6 cut(s)	75, 163, 264, 294, 316, 507
SfaNI	GCATC	2 cut(s)	106, 405
SinI	GGWCC	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	5 cut(s)	17, 31, 80, 545, 578
SsiI	CCGC	2 cut(s)	104, 530
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	358, 487
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	15
TasI	AATT	5 cut(s)	17, 31, 80, 545, 578
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	308, 589
Tru9I	TTAA	2 cut(s)	308, 589
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	3 cut(s)	169, 337, 463
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	2 cut(s)	17, 578
XceI	RCATGY	1 cut(s)	517
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.