Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007147

Physical Location & Seq

Genomic Coordinates Reverse (-)

9934697 .. 9938869

Gene Structure 4173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCTCCGGGTGGATGTGTATTGCTCTCTACTTTCTAGTCCTCGACAAGTCAAGTTGGTAAATGTCGGCAACAGAAGTTTAGGGTCATGGCAGATACAGCAGCGTAGTGCTCAAAGACTACCCAAGGGGATTTCTGTCAAGGCGGTGAAAGATGGGATGGGAGGGGAAACAAGCGGATTTCGGGGTCAGAGTTGGGAGCCTGGGTCAGAAGTTGAGGTTCCCTTTGAACAAAGACCGGTGAATGAGTACTCATCTTTGAAGGAATCAACCTTGTACTCATGGGGCGATCTGGGACCAGGGCCTTTTTTCCTTCGTCTAGGAGGTTTGTGGTTGGTAACATTCACAGTTTTAGGAGCACCTATAGCAGCTGCAAGCTTTAATCCAGCAAGGGTAGAATGGTTCTACGCCTGCAAGACTGTCATATTTCTTTACTCTCCTTCCATTCCAACCTTGCAGGACCCTCTAAGATTTGTGCTCGCAGCTGGAACTGGAACTCTTTTCCTGGGATGGAGTTACGTTGGTGATAGACTACTATCAGCTGTCATACCTTATGAAGAGACTGGATGGTATGATGGACAAATGTGGGTGAAACCACCTGAGGTCCTGGCTCGTGACAGACTGTTGGGCTCTTACAAGGTTAAACCAGTCATCAAGTTGCTGAAACAGACTCTAGTCGGAACAGGGGTATTGCTTGTTTCAGCAGTGATGCTATTTATCTTTGCTACACCAGTGGAGGATTTCATTCAAACCACATTTTCTACAAAAGAAAACTCATCAAATGTTTCCGTCTCAAAAATGAGAAGAGAAGACCTGCTTAAATTGCCTATAGAGGTGAAATCTGATGATGACCTAGCAGCAGCTGCTGCTGAGGCGGCAGATGGAAGACCAGTGTACTGCAGAGATAGGTTTTATCGTGCACTAGCAGGTGGACAATACTGCAAGTCGGATGATCTACTCATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009605 GO:0009991 GO:0031667 GO:0042594 GO:0050896 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1230

Protein Analysis

322

Amino Acids

35.53

Weight (kDa)

8.75

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CGLD27-like	PF06799	72 - 131	2.7e-12	Conserved in the green lineage and diatoms 27
CGLD27-like	PF06799	139 - 235	1.2e-36	Conserved in the green lineage and diatoms 27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67370
fragaria_vesca	FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200
malus_domestica	MD02G1181900.v1.1 MD15G1293200.v1.1
prunus_persica	Prupe.6G224400_v2.0.a1 Prupe.6G224400_v2.0.a1
pyrus_communis	pycom02g14750 pycom15g25620
rosa_chinensis	RchiOBHm_Chr2g0107351
rosa_laevigata	RLG00000017572
rosa_multiflora	Rmu_co8510805.1_g000001 Rmu_sc0010952.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136410
rosa_rugosa	Rorug02G0142300 Rorug02G0142400 Rorug02G0142500
rosa_samantha	Rh2AG193000 Rh2BG205200 Rh2CG198300 Rh2DG200300
rosa_wichuraiana	Rw2G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	914
Acc36I	ACCTGC	2 cut(s)	819, 914
AciI	CCGC	3 cut(s)	143, 174, 872
AfaI	GTAC	3 cut(s)	248, 275, 893
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	227, 259, 746
AjnI	CCWGG	4 cut(s)	199, 295, 501, 603
AluBI	AGCT	5 cut(s)	368, 375, 482, 539, 860
AluI	AGCT	5 cut(s)	368, 375, 482, 539, 860
Alw21I	GWGCWC	4 cut(s)	112, 358, 477, 919
Alw26I	GTCTC	2 cut(s)	551, 793
Alw44I	GTGCAC	1 cut(s)	915
AlwNI	CAGNNNCTG	2 cut(s)	860, 863
AoxI	GGCC	1 cut(s)	299
ApaLI	GTGCAC	1 cut(s)	915
ApeKI	GCWGC	8 cut(s)	100, 365, 368, 479, 854, 857, 860, 863
AsiGI	ACCGGT	1 cut(s)	235
AspS9I	GGNCC	4 cut(s)	293, 299, 457, 601
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	5 cut(s)	157, 250, 533, 598, 844
AvaII	GGWCC	3 cut(s)	293, 457, 601
AxyI	CCTNAGG	1 cut(s)	597
BaeGI	GKGCMC	1 cut(s)	919
BanII	GRGCYC	1 cut(s)	629
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	2 cut(s)	813, 889
Bbv12I	GWGCWC	4 cut(s)	112, 358, 477, 919
BbvCI	CCTCAGC	1 cut(s)	867
BbvI	GCAGC	8 cut(s)	112, 355, 377, 491, 847, 850, 866, 869
BccI	CCATC	6 cut(s)	146, 151, 501, 558, 566, 872
BciT130I	CCWGG	4 cut(s)	201, 297, 503, 605
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	2 cut(s)	551, 793
BfaI	CTAG	5 cut(s)	36, 317, 671, 851, 920
BfmI	CTRYAG	3 cut(s)	360, 825, 895
BfuAI	ACCTGC	2 cut(s)	819, 914
BisI	GCNGC	9 cut(s)	101, 366, 369, 480, 855, 858, 861, 864, 873
BlsI	GCNGC	9 cut(s)	102, 367, 370, 481, 856, 859, 862, 865, 874
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	5 cut(s)	8, 201, 297, 503, 605
Bme18I	GGWCC	3 cut(s)	293, 457, 601
BmgT120I	GGNCC	4 cut(s)	293, 299, 457, 601
BmiI	GGNNCC	4 cut(s)	198, 219, 294, 459
BmrFI	CCNGG	5 cut(s)	8, 201, 297, 503, 605
BmsI	GCATC	1 cut(s)	696
BoxI	GACNNNNGTC	1 cut(s)	671
BpiI	GAAGAC	2 cut(s)	813, 889
Bpu10I	CCTNAGC	1 cut(s)	867
BpuMI	CCSGG	1 cut(s)	8
BsaJI	CCNNGG	4 cut(s)	123, 200, 296, 502
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	5 cut(s)	493, 565, 644, 728, 887
Bse21I	CCTNAGG	1 cut(s)	597
BseBI	CCWGG	4 cut(s)	201, 297, 503, 605
BseDI	CCNNGG	4 cut(s)	123, 200, 296, 502
BseGI	GGATG	5 cut(s)	19, 162, 512, 569, 952
BseMII	CTCAG	2 cut(s)	588, 858
BseNI	ACTGG	5 cut(s)	493, 565, 644, 728, 887
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	8 cut(s)	112, 355, 377, 491, 847, 850, 866, 869
BshFI	GGCC	1 cut(s)	301
BshTI	ACCGGT	1 cut(s)	235
BsiHKAI	GWGCWC	4 cut(s)	112, 358, 477, 919
BsiSI	CCGG	2 cut(s)	7, 236
BslFI	GGGAC	1 cut(s)	306
BsmAI	GTCTC	2 cut(s)	551, 793
BsmBI	CGTCTC	1 cut(s)	793
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	301
Bsp1286I	GDGCHC	5 cut(s)	112, 358, 477, 629, 919
Bsp143I	GATC	2 cut(s)	286, 949
BspACI	CCGC	3 cut(s)	143, 174, 872
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	2 cut(s)	589, 859
BspHI	TCATGA	1 cut(s)	957
BspLI	GGNNCC	4 cut(s)	198, 219, 294, 459
BspMAI	CTGCAG	1 cut(s)	899
BspMI	ACCTGC	2 cut(s)	819, 914
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	5 cut(s)	493, 565, 644, 728, 887
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	4 cut(s)	123, 200, 296, 502
BssMI	GATC	2 cut(s)	286, 949
BssSI	CACGAG	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	4 cut(s)	201, 297, 503, 605
Bst4CI	ACNGT	3 cut(s)	346, 418, 621
Bst6I	CTCTTC	2 cut(s)	549, 796
BstAPI	GCANNNNNTGC	2 cut(s)	860, 863
BstC8I	GCNNGC	3 cut(s)	373, 409, 477
BstDEI	CTNAG	3 cut(s)	464, 597, 867
BstF5I	GGATG	5 cut(s)	19, 162, 512, 569, 952
BstKTI	GATC	2 cut(s)	289, 952
BstMAI	GTCTC	2 cut(s)	551, 793
BstMBI	GATC	2 cut(s)	286, 949
BstMWI	GCNNNNNNNGC	7 cut(s)	97, 362, 820, 860, 863, 869, 872
BstNI	CCWGG	4 cut(s)	201, 297, 503, 605
BstPAI	GACNNNNGTC	1 cut(s)	671
BstSCI	CCNGG	5 cut(s)	6, 199, 295, 501, 603
BstSFI	CTRYAG	3 cut(s)	360, 825, 895
BstSLI	GKGCMC	1 cut(s)	919
BstV1I	GCAGC	8 cut(s)	112, 355, 377, 491, 847, 850, 866, 869
BstV2I	GAAGAC	2 cut(s)	813, 889
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	5 cut(s)	19, 162, 512, 569, 952
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	3 cut(s)	708, 735, 894
BveI	ACCTGC	2 cut(s)	819, 914
Cac8I	GCNNGC	3 cut(s)	373, 409, 477
CaiI	CAGNNNCTG	2 cut(s)	860, 863
CciI	TCATGA	1 cut(s)	957
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	4 cut(s)	293, 299, 457, 601
Csp6I	GTAC	3 cut(s)	247, 274, 892
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	3 cut(s)	87, 279, 958
CviJI	RGCY	9 cut(s)	199, 301, 368, 375, 482, 539, 608, 627, 860
CviKI_1	RGCY	9 cut(s)	199, 301, 368, 375, 482, 539, 608, 627, 860
CviQI	GTAC	3 cut(s)	247, 274, 892
DdeI	CTNAG	3 cut(s)	464, 597, 867
DpnI	GATC	2 cut(s)	288, 951
DpnII	GATC	2 cut(s)	286, 949
Eam1104I	CTCTTC	2 cut(s)	549, 796
EarI	CTCTTC	2 cut(s)	549, 796
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	629
Eco47I	GGWCC	3 cut(s)	293, 457, 601
Eco81I	CCTNAGG	1 cut(s)	597
EcoO109I	RGGNCCY	3 cut(s)	299, 457, 601
EcoRII	CCWGG	4 cut(s)	199, 295, 501, 603
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	793
FaeI	CATG	3 cut(s)	90, 282, 961
FaiI	YATR	9 cut(s)	88, 280, 362, 422, 545, 552, 570, 827, 959
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	3 cut(s)	86, 278, 957
Fnu4HI	GCNGC	9 cut(s)	101, 366, 369, 480, 855, 858, 861, 864, 873
FokI	GGATG	5 cut(s)	26, 169, 519, 576, 959
FriOI	GRGCYC	1 cut(s)	629
Fsp4HI	GCNGC	9 cut(s)	101, 366, 369, 480, 855, 858, 861, 864, 873
FspBI	CTAG	5 cut(s)	36, 317, 671, 851, 920
GluI	GCNGC	9 cut(s)	101, 366, 369, 480, 855, 858, 861, 864, 873
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	2 cut(s)	7, 236
Hin1II	CATG	3 cut(s)	90, 282, 961
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	2 cut(s)	263, 667
HpaII	CCGG	2 cut(s)	7, 236
HphI	GGTGA	5 cut(s)	157, 250, 533, 598, 844
Hpy166II	GTNNAC	3 cut(s)	892, 917, 929
Hpy188I	TCNGA	5 cut(s)	189, 208, 677, 841, 946
Hpy188III	TCNNGA	2 cut(s)	611, 958
Hpy8I	GTNNAC	3 cut(s)	892, 917, 929
HpyAV	CCTTC	3 cut(s)	253, 320, 447
HpyCH4III	ACNGT	3 cut(s)	346, 418, 621
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	6 cut(s)	371, 411, 454, 897, 917, 939
HpyF10VI	GCNNNNNNNGC	7 cut(s)	97, 362, 820, 860, 863, 869, 872
HpyF3I	CTNAG	3 cut(s)	464, 597, 867
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	90, 282, 961
Kzo9I	GATC	2 cut(s)	286, 949
LmnI	GCTCC	3 cut(s)	9, 196, 353
Lsp1109I	GCAGC	8 cut(s)	112, 355, 377, 491, 847, 850, 866, 869
LweI	GCATC	1 cut(s)	696
MaeI	CTAG	5 cut(s)	36, 317, 671, 851, 920
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	334, 512, 611
MalI	GATC	2 cut(s)	288, 951
MboI	GATC	2 cut(s)	286, 949
MboII	GAAGA	4 cut(s)	566, 813, 818, 894
MhlI	GDGCHC	5 cut(s)	112, 358, 477, 629, 919
MluCI	AATT	1 cut(s)	818
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	3 cut(s)	470, 655, 924
MnlI	CCTC	9 cut(s)	51, 155, 208, 314, 471, 592, 727, 823, 862
MseI	TTAA	3 cut(s)	378, 639, 816
MspA1I	CMGCKG	4 cut(s)	368, 482, 539, 860
MspI	CCGG	2 cut(s)	7, 236
MspR9I	CCNGG	5 cut(s)	8, 201, 297, 503, 605
MvaI	CCWGG	4 cut(s)	201, 297, 503, 605
MwoI	GCNNNNNNNGC	7 cut(s)	97, 362, 820, 860, 863, 869, 872
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	2 cut(s)	286, 949
NlaIII	CATG	3 cut(s)	90, 282, 961
NlaIV	GGNNCC	4 cut(s)	198, 219, 294, 459
NmuCI	GTSAC	1 cut(s)	611
PagI	TCATGA	1 cut(s)	957
PaqCI	CACCTGC	1 cut(s)	914
PfeI	GAWTC	1 cut(s)	263
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	9 cut(s)	102, 367, 370, 481, 856, 859, 862, 865, 874
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PpuMI	RGGWCCY	2 cut(s)	457, 601
PshAI	GACNNNNGTC	1 cut(s)	671
Psp5II	RGGWCCY	2 cut(s)	457, 601
Psp6I	CCWGG	4 cut(s)	199, 295, 501, 603
PspGI	CCWGG	4 cut(s)	199, 295, 501, 603
PspN4I	GGNNCC	4 cut(s)	198, 219, 294, 459
PspPI	GGNCC	4 cut(s)	293, 299, 457, 601
PspPPI	RGGWCCY	2 cut(s)	457, 601
PstI	CTGCAG	1 cut(s)	899
PstNI	CAGNNNCTG	2 cut(s)	860, 863
PvuII	CAGCTG	4 cut(s)	368, 482, 539, 860
RsaI	GTAC	3 cut(s)	248, 275, 893
RsaNI	GTAC	3 cut(s)	247, 274, 892
SaqAI	TTAA	3 cut(s)	378, 639, 816
SatI	GCNGC	9 cut(s)	101, 366, 369, 480, 855, 858, 861, 864, 873
Sau3AI	GATC	2 cut(s)	286, 949
Sau96I	GGNCC	4 cut(s)	293, 299, 457, 601
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	5 cut(s)	8, 201, 297, 503, 605
SduI	GDGCHC	5 cut(s)	112, 358, 477, 629, 919
SfaNI	GCATC	1 cut(s)	696
SfcI	CTRYAG	3 cut(s)	360, 825, 895
SinI	GGWCC	3 cut(s)	293, 457, 601
Sse9I	AATT	1 cut(s)	818
SsiI	CCGC	3 cut(s)	143, 174, 872
SspMI	CTAG	5 cut(s)	36, 317, 671, 851, 920
StyD4I	CCNGG	5 cut(s)	6, 199, 295, 501, 603
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	346, 418, 621
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	818
TatI	WGTACW	3 cut(s)	246, 273, 891
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	3 cut(s)	378, 639, 816
Tru9I	TTAA	3 cut(s)	378, 639, 816
TscAI	CASTG	3 cut(s)	708, 735, 894
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	8 cut(s)	100, 365, 368, 479, 854, 857, 860, 863
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	2 cut(s)	567, 730
TspGWI	ACGGA	1 cut(s)	775
TspRI	CASTG	3 cut(s)	708, 735, 894
VneI	GTGCAC	1 cut(s)	915
VpaK11BI	GGWCC	3 cut(s)	293, 457, 601
XspI	CTAG	5 cut(s)	36, 317, 671, 851, 920
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.