Rorug02G0142500

Protein of unknown function (DUF1230)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007147
Physical Location & Seq
Reverse (-)
12526470 .. 12526889
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0142500.1

Sequence Viewer

Length: 261 bp
ATGGTTCTTCATAATGATATCAATTTGCTTCATCCATCAGCTGATCTGGAGAAGAGGAAGCACAAGCTCAAGCGGCTTGTGCAGACCCCAAATTCTTTTTTCATGGATGTCAAATGCCAAGGATGTTTCAACATAACTACTGTGTTCAGTCACTCGCAAACTGTTGTGGTGTGTGGGAACTGGCAGACAGTGTTGTGCCAGCCTACTAGTGGGCGTGCTAGGCTCACTGAGGGTTGTTCCTTCAGGAGGAAAGGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009605 GO:0009991 GO:0031667 GO:0042594 GO:0050896 GO:1990641
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1230

Protein Analysis

86

Amino Acids

9.78

Weight (kDa)

9.45

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S27e PF01667 30 - 84 2.9e-24 Ribosomal protein S27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 209, 246
AgsI TTSAA 1 cut(s) 130
AhlI ACTAGT 1 cut(s) 206
AluBI AGCT 2 cut(s) 41, 67
AluI AGCT 2 cut(s) 41, 67
ApoI RAATTY 1 cut(s) 91
BccI CCATC 1 cut(s) 43
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 2 cut(s) 207, 219
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 246
Bse1I ACTGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 3 cut(s) 31, 112, 128
BseLI CCNNNNNNNGG 2 cut(s) 209, 246
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 209, 246
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 220
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 142, 163, 190
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 200, 216
BstDEI CTNAG 1 cut(s) 228
BstENI CCTNNNNNAGG 1 cut(s) 244
BstF5I GGATG 3 cut(s) 31, 112, 128
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 73, 79, 220
BtsCI GGATG 3 cut(s) 31, 112, 128
BtsIMutI CAGTG 2 cut(s) 195, 225
Cac8I GCNNGC 2 cut(s) 200, 216
CviAII CATG 1 cut(s) 103
CviJI RGCY 5 cut(s) 41, 67, 76, 202, 223
CviKI_1 RGCY 5 cut(s) 41, 67, 76, 202, 223
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 118
Eco32I GATATC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 244
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 12, 104, 134
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 3 cut(s) 18, 119, 135
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 2 cut(s) 207, 219
GluI GCNGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 68
Hin1II CATG 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 47, 244
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 3 cut(s) 142, 163, 190
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 79, 220
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 4 cut(s) 32, 166, 212, 229
MaeI CTAG 2 cut(s) 207, 219
MaeIII GTNAC 1 cut(s) 149
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 64
MluCI AATT 2 cut(s) 22, 91
MnlI CCTC 3 cut(s) 48, 223, 240
MspA1I CMGCKG 1 cut(s) 41
MwoI GCNNNNNNNGC 3 cut(s) 73, 79, 220
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 41
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 1 cut(s) 43
SetI ASST 2 cut(s) 43, 69
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 2 cut(s) 22, 91
SsiI CCGC 1 cut(s) 73
SspMI CTAG 2 cut(s) 207, 219
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 3 cut(s) 142, 163, 190
TasI AATT 2 cut(s) 22, 91
TauI GCSGC 1 cut(s) 76
TscAI CASTG 2 cut(s) 195, 232
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 20, 91
TspRI CASTG 2 cut(s) 195, 232
XagI CCTNNNNNAGG 1 cut(s) 244
XapI RAATTY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 2 cut(s) 207, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.