Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007147

Physical Location & Seq

Genomic Coordinates Reverse (-)

11357438 .. 11360712

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14750.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCTCCGGGCGCAGGTGTATTGCTCTCTGCTCCTTAGTCCTCCACAAGTCAAGTTAGTGAAGGTTGGTAGCAGCTCTAGCTCATGGCTGATCCAATACCGTAGTGCTCAGAGGCTACCCAAGGAGGTTTCTGTCAAGGCCTTGAAAGATGGGGCAGGTGGGGAAACGAGCGGCTTCCGCGGGCAGAGTTGGGATCCCGGGTCAGAAATTGAGGTTCCTTTTGAGCAAAGGCCGGTGAATGAGTACTCGTCTCTGAAGGACGGAGTCTTCTATTCGTGGGGCGAACTGGGACCTGTGCCTTTTTTACTTCGACTTGGAGGTTTGTGGTTGGTAACTTTCACAACCCTAGGATTGCCTATTGCAGCTGCAAGCTTCAATCCATCAAGGGACCCTCTAAGATTTGCGCTAGCGGCTGGAACTGGAACTCTTTTTGTTGTGTCGTTGATTGTCTTAAGAATTTATCTGGGATGGAGTTATGTTGGTGATAGGCTACTATCAGCAGTTATACCTTACGAAGAGAGTGGCTGGTATGACGGACAAATGTGGGTAAAGCCACCTGAGGTTAGCACCCTCCTTATCCTTTCTCAGTTAATAAGGATCAAGGTTAAACCCGTCATAAAATTGCTGAAGCAGACTCTAGTGGGAACAGGAGCATTACTTGTTACAGGAGTGCTGCTATTTATCTTTGCTACACAGGTGGAGGATTTGACTCACACCACATTCGGCACAAAACAAAACCCGTCAAGTGCTTCCGCCTCAAAGATCAGCTCAAAGCTCAATATAAGTAAAGAGGAGTTACTTAAACTGCCTACAGACGTGAAGGCCAATGATGATCTAGCAGCAGCAGCTGCTGAGGCTGCTGATGGAAGACCAGTCTACTGCCGAGATAGGTTTTATCGTGCATTAGCAGGTGGACAGTACTGCAAATGGGAGGATCTACTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009605 GO:0009991 GO:0031667 GO:0042594 GO:0050896 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1230

Protein Analysis

316

Amino Acids

34.48

Weight (kDa)

9.1

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67370
fragaria_vesca	FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200
malus_domestica	MD02G1181900.v1.1 MD15G1293200.v1.1
prunus_persica	Prupe.6G224400_v2.0.a1 Prupe.6G224400_v2.0.a1
pyrus_communis	pycom02g14750 pycom15g25620
rosa_chinensis	RchiOBHm_Chr2g0107351
rosa_laevigata	RLG00000017572
rosa_multiflora	Rmu_co8510805.1_g000001 Rmu_sc0010952.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136410
rosa_rugosa	Rorug02G0142300 Rorug02G0142400 Rorug02G0142500
rosa_samantha	Rh2AG193000 Rh2BG205200 Rh2CG198300 Rh2DG200300
rosa_wichuraiana	Rw2G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	4, 146, 899
Acc36I	ACCTGC	3 cut(s)	4, 146, 899
AccBSI	CCGCTC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	876
AccII	CGCG	1 cut(s)	180
AciI	CCGC	5 cut(s)	171, 178, 180, 410, 753
AclWI	GGATC	5 cut(s)	85, 188, 201, 605, 942
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	2 cut(s)	275, 647
AfaI	GTAC	2 cut(s)	245, 920
AfiI	CCNNNNNNNGG	1 cut(s)	13
AflII	CTTAAG	2 cut(s)	451, 941
AgsI	TTSAA	2 cut(s)	145, 376
AjiI	CACGTC	1 cut(s)	817
AluBI	AGCT	7 cut(s)	75, 81, 365, 372, 768, 775, 848
AluI	AGCT	7 cut(s)	75, 81, 365, 372, 768, 775, 848
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	5 cut(s)	85, 188, 201, 605, 942
AlwNI	CAGNNNCTG	2 cut(s)	848, 851
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	3 cut(s)	138, 230, 822
ApeKI	GCWGC	9 cut(s)	72, 362, 365, 673, 839, 842, 845, 848, 857
ApoI	RAATTY	1 cut(s)	456
AspA2I	CCTAGG	1 cut(s)	346
AspLEI	GCGC	2 cut(s)	13, 406
AspS9I	GGNCC	2 cut(s)	290, 388
AsuC2I	CCSGG	3 cut(s)	8, 198, 199
AsuHPI	GGTGA	2 cut(s)	247, 494
AsuNHI	GCTAGC	1 cut(s)	406
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	290, 388
AvrII	CCTAGG	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	558
BamHI	GGATCC	1 cut(s)	193
BbsI	GAAGAC	2 cut(s)	259, 874
Bbv12I	GWGCWC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	852
BbvI	GCAGC	9 cut(s)	84, 352, 374, 660, 835, 844, 851, 854, 857
BccI	CCATC	4 cut(s)	143, 388, 462, 857
BcnI	CCSGG	3 cut(s)	8, 198, 199
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	5 cut(s)	78, 347, 407, 638, 836
BfmI	CTRYAG	1 cut(s)	810
BfrI	CTTAAG	2 cut(s)	451, 941
BfuAI	ACCTGC	3 cut(s)	4, 146, 899
BlnI	CCTAGG	1 cut(s)	346
BmcAI	AGTACT	2 cut(s)	245, 920
Bme1390I	CCNGG	3 cut(s)	8, 198, 199
Bme18I	GGWCC	2 cut(s)	290, 388
BmeT110I	CYCGRG	1 cut(s)	197
BmgBI	CACGTC	1 cut(s)	817
BmgT120I	GGNCC	2 cut(s)	290, 388
BmiI	GGNNCC	5 cut(s)	195, 216, 291, 389, 390
BmrFI	CCNGG	3 cut(s)	8, 198, 199
BmrI	ACTGGG	1 cut(s)	296
BmtI	GCTAGC	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	296
BpiI	GAAGAC	2 cut(s)	259, 874
Bpu10I	CCTNAGC	1 cut(s)	852
BpuMI	CCSGG	3 cut(s)	8, 198, 199
BsaJI	CCNNGG	4 cut(s)	120, 178, 197, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	3 cut(s)	291, 424, 872
Bse21I	CCTNAGG	1 cut(s)	558
BseDI	CCNNGG	4 cut(s)	120, 178, 197, 346
BseGI	GGATG	1 cut(s)	473
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	4 cut(s)	122, 549, 599, 843
BseNI	ACTGG	3 cut(s)	291, 424, 872
BseRI	GAGGAG	1 cut(s)	806
BseXI	GCAGC	9 cut(s)	84, 352, 374, 660, 835, 844, 851, 854, 857
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	140, 232, 824
BsiHKAI	GWGCWC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	3 cut(s)	7, 198, 233
BslFI	GGGAC	2 cut(s)	303, 401
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	303, 401
BsnI	GGCC	3 cut(s)	140, 232, 824
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	6 cut(s)	90, 193, 597, 762, 832, 934
BspACI	CCGC	5 cut(s)	171, 178, 180, 410, 753
BspANI	GGCC	3 cut(s)	140, 232, 824
BspCNI	CTCAG	4 cut(s)	121, 550, 598, 844
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	5 cut(s)	195, 216, 291, 389, 390
BspMI	ACCTGC	3 cut(s)	4, 146, 899
BspOI	GCTAGC	1 cut(s)	410
BspPI	GGATC	5 cut(s)	85, 188, 201, 605, 942
BspTI	CTTAAG	2 cut(s)	451, 941
BsrBI	CCGCTC	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	3 cut(s)	291, 424, 872
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	4 cut(s)	120, 178, 197, 346
BssMI	GATC	6 cut(s)	90, 193, 597, 762, 832, 934
BssT1I	CCWWGG	2 cut(s)	120, 346
Bst4CI	ACNGT	2 cut(s)	101, 918
Bst6I	CTCTTC	1 cut(s)	510
BstAFI	CTTAAG	2 cut(s)	451, 941
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstC8I	GCNNGC	3 cut(s)	182, 370, 408
BstDEI	CTNAG	6 cut(s)	35, 108, 395, 558, 585, 852
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	473
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	13, 406
BstKTI	GATC	6 cut(s)	93, 196, 600, 765, 835, 937
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	6 cut(s)	90, 193, 597, 762, 832, 934
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 78, 177, 410, 845, 848, 854, 857
BstSCI	CCNGG	3 cut(s)	6, 196, 197
BstSFI	CTRYAG	1 cut(s)	810
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	9 cut(s)	84, 352, 374, 660, 835, 844, 851, 854, 857
BstV2I	GAAGAC	2 cut(s)	259, 874
BstX2I	RGATCY	2 cut(s)	193, 934
BstYI	RGATCY	2 cut(s)	193, 934
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	140, 232, 824
BtgI	CCRYGG	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	1 cut(s)	473
BveI	ACCTGC	3 cut(s)	4, 146, 899
Cac8I	GCNNGC	3 cut(s)	182, 370, 408
CaiI	CAGNNNCTG	2 cut(s)	848, 851
CfoI	GCGC	2 cut(s)	13, 406
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	290, 388
Cfr42I	CCGCGG	1 cut(s)	181
Cfr9I	CCCGGG	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	244, 919
CviAII	CATG	1 cut(s)	84
CviQI	GTAC	2 cut(s)	244, 919
DdeI	CTNAG	6 cut(s)	35, 108, 395, 558, 585, 852
DpnI	GATC	6 cut(s)	92, 195, 599, 764, 834, 936
DpnII	GATC	6 cut(s)	90, 193, 597, 762, 832, 934
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	742
Eco130I	CCWWGG	2 cut(s)	120, 346
Eco147I	AGGCCT	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	290, 388
Eco57I	CTGAAG	2 cut(s)	275, 647
Eco81I	CCTNAGG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	197
EcoO109I	RGGNCCY	2 cut(s)	290, 388
EcoT14I	CCWWGG	2 cut(s)	120, 346
ErhI	CCWWGG	2 cut(s)	120, 346
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	1 cut(s)	87
FaiI	YATR	6 cut(s)	85, 477, 506, 531, 617, 782
FaqI	GGGAC	2 cut(s)	303, 401
FatI	CATG	1 cut(s)	83
FauI	CCCGC	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	876
FokI	GGATG	1 cut(s)	480
FspBI	CTAG	5 cut(s)	78, 347, 407, 638, 836
GlaI	GCGC	2 cut(s)	12, 405
HaeIII	GGCC	3 cut(s)	140, 232, 824
HapII	CCGG	3 cut(s)	7, 198, 233
HhaI	GCGC	2 cut(s)	13, 406
Hin1II	CATG	1 cut(s)	87
Hin6I	GCGC	2 cut(s)	11, 404
HinP1I	GCGC	2 cut(s)	11, 404
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	3 cut(s)	264, 634, 709
HpaII	CCGG	3 cut(s)	7, 198, 233
HphI	GGTGA	2 cut(s)	247, 494
Hpy166II	GTNNAC	2 cut(s)	877, 914
Hpy188I	TCNGA	3 cut(s)	111, 205, 255
Hpy8I	GTNNAC	2 cut(s)	877, 914
HpyAV	CCTTC	3 cut(s)	55, 250, 814
HpyCH4III	ACNGT	2 cut(s)	101, 918
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	4 cut(s)	362, 368, 902, 924
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 78, 177, 410, 845, 848, 854, 857
HpyF3I	CTNAG	6 cut(s)	35, 108, 395, 558, 585, 852
HpySE526I	ACGT	1 cut(s)	816
Hsp92II	CATG	1 cut(s)	87
HspAI	GCGC	2 cut(s)	11, 404
KflI	GGGWCCC	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	6 cut(s)	90, 193, 597, 762, 832, 934
LmnI	GCTCC	3 cut(s)	9, 36, 650
Lsp1109I	GCAGC	9 cut(s)	84, 352, 374, 660, 835, 844, 851, 854, 857
MaeI	CTAG	5 cut(s)	78, 347, 407, 638, 836
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	3 cut(s)	331, 661, 795
MalI	GATC	6 cut(s)	92, 195, 599, 764, 834, 936
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	6 cut(s)	90, 193, 597, 762, 832, 934
MboII	GAAGA	3 cut(s)	259, 527, 879
MflI	RGATCY	2 cut(s)	193, 934
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	3 cut(s)	207, 456, 620
MlyI	GAGTC	3 cut(s)	273, 628, 703
MseI	TTAA	5 cut(s)	452, 590, 606, 801, 942
MspA1I	CMGCKG	3 cut(s)	180, 365, 848
MspCI	CTTAAG	2 cut(s)	451, 941
MspI	CCGG	3 cut(s)	7, 198, 233
MspR9I	CCNGG	3 cut(s)	8, 198, 199
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	8 cut(s)	10, 78, 177, 410, 845, 848, 854, 857
NciI	CCSGG	3 cut(s)	8, 198, 199
NdeII	GATC	6 cut(s)	90, 193, 597, 762, 832, 934
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	87
NlaIV	GGNNCC	5 cut(s)	195, 216, 291, 389, 390
NmeAIII	GCCGAG	1 cut(s)	908
PaqCI	CACCTGC	3 cut(s)	4, 146, 899
PceI	AGGCCT	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	263
PleI	GAGTC	3 cut(s)	272, 628, 703
PpsI	GAGTC	3 cut(s)	272, 628, 703
PpuMI	RGGWCCY	2 cut(s)	290, 388
Psp5II	RGGWCCY	2 cut(s)	290, 388
PspN4I	GGNNCC	5 cut(s)	195, 216, 291, 389, 390
PspPI	GGNCC	2 cut(s)	290, 388
PspPPI	RGGWCCY	2 cut(s)	290, 388
PstNI	CAGNNNCTG	2 cut(s)	848, 851
PsuI	RGATCY	2 cut(s)	193, 934
PsyI	GACNNNGTC	1 cut(s)	263
PvuII	CAGCTG	2 cut(s)	365, 848
RsaI	GTAC	2 cut(s)	245, 920
RsaNI	GTAC	2 cut(s)	244, 919
SacII	CCGCGG	1 cut(s)	181
SaqAI	TTAA	5 cut(s)	452, 590, 606, 801, 942
Sau3AI	GATC	6 cut(s)	90, 193, 597, 762, 832, 934
Sau96I	GGNCC	2 cut(s)	290, 388
ScaI	AGTACT	2 cut(s)	245, 920
SchI	GAGTC	3 cut(s)	273, 628, 703
ScrFI	CCNGG	3 cut(s)	8, 198, 199
SduI	GDGCHC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	810
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SinI	GGWCC	2 cut(s)	290, 388
SmaI	CCCGGG	1 cut(s)	199
SmlI	CTYRAG	2 cut(s)	451, 941
SmoI	CTYRAG	2 cut(s)	451, 941
Sse9I	AATT	3 cut(s)	207, 456, 620
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	5 cut(s)	171, 178, 180, 410, 753
SspMI	CTAG	5 cut(s)	78, 347, 407, 638, 836
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	6, 196, 197
StyI	CCWWGG	2 cut(s)	120, 346
TaaI	ACNGT	2 cut(s)	101, 918
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	1 cut(s)	310
TasI	AATT	3 cut(s)	207, 456, 620
TatI	WGTACW	2 cut(s)	243, 918
TauI	GCSGC	2 cut(s)	174, 413
Tru1I	TTAA	5 cut(s)	452, 590, 606, 801, 942
Tru9I	TTAA	5 cut(s)	452, 590, 606, 801, 942
TseI	GCWGC	9 cut(s)	72, 362, 365, 673, 839, 842, 845, 848, 857
TspGWI	ACGGA	2 cut(s)	276, 549
TspMI	CCCGGG	1 cut(s)	197
Tth111I	GACNNNGTC	1 cut(s)	263
Vha464I	CTTAAG	2 cut(s)	451, 941
VpaK11BI	GGWCC	2 cut(s)	290, 388
XapI	RAATTY	1 cut(s)	456
XmaI	CCCGGG	1 cut(s)	197
XmaJI	CCTAGG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	876
XspI	CTAG	5 cut(s)	78, 347, 407, 638, 836
ZrmI	AGTACT	2 cut(s)	245, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.