Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007147

Physical Location & Seq

Genomic Coordinates Reverse (-)

20120779 .. 20124228

Gene Structure 3450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25620.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCTCCGAGCGCAAGTGTATTGCTCTCTGCTCTTTAGTCCTCCACAAGTCAAGTTAGTGACGGTTGGTAGCAGCTCCAGCTCATGGCTCATCCAATACCGTAGTGCTAGAAGGCTGCCCAGGGGGGTTTCTATCAAGGCCTTGAAAGATGGGGCAGGCGGGGAAACGAGCGGCTTCCGCGGGCAGAGTTGGGATCCGGGATCAGAAATTGAGGTTCCTTTTGAGCAAAGGCCGGTGAATGAGTACTCGTCTCTGAAGGACGGAGCCTTGTATTCGTGGGGCGAACTGGGACCTGGGCCCTTTTTACTTCGACTCGGAGGTTTGTGGTTGGTAACTTTCACAACTCTAGGATTGCCTATTGCAGCTGCAAGCTTTAATCCATCAAGGGACCCTCTAAGATTTGCGCTAGCCGCTGGAACTGGAACTCTTTTTGTTGTATCGTTGATTGTCTTAAGAATTTATCTGGGATGGAGTTATGTTGGTGATAGGCTACTATCAGCAGTTATACCTTACGAAGAGAGTGGCTGGTATGACGGACAAATGTGGGTAAAGCCACCTGAGGTCTTGGCTCGTGACAGACTCTTGGGATCTTACAAGGTCAAACCAGTCATCAAATTGCTGAAACAGACTCTAGTTGGAACAGGGGCATTACTTGTTACAGGAGTGCTGCTGTTTATCTTTGCTACACCAGTGGAAGACTTCGTTCGCACCACATTTGGCACGAAACAAAACTCGTCAGATATTTCCGCCTCAAAAATCAGCTCAAAGTTCAATATAAGTAAAGAGGAGTTGCTTAAATTGCCTACGGATGTGAAGGCCAATGATGATCTAGCAGCAGCTGCTGCTGAGGCTGCTGACGGAAGACCAGTCTACTGCAGAGATAGGTTTTATCGTGCATTAGCAGGTGGACAATACTGCAAATGGGAGGACCTGCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009605 GO:0009991 GO:0031667 GO:0042594 GO:0050896 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1230

Protein Analysis

314

Amino Acids

34.28

Weight (kDa)

9.22

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67370
fragaria_vesca	FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200
malus_domestica	MD02G1181900.v1.1 MD15G1293200.v1.1
prunus_persica	Prupe.6G224400_v2.0.a1 Prupe.6G224400_v2.0.a1
pyrus_communis	pycom02g14750 pycom15g25620
rosa_chinensis	RchiOBHm_Chr2g0107351
rosa_laevigata	RLG00000017572
rosa_multiflora	Rmu_co8510805.1_g000001 Rmu_sc0010952.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136410
rosa_rugosa	Rorug02G0142300 Rorug02G0142400 Rorug02G0142500
rosa_samantha	Rh2AG193000 Rh2BG205200 Rh2CG198300 Rh2DG200300
rosa_wichuraiana	Rw2G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	893
Acc36I	ACCTGC	1 cut(s)	893
AccB7I	CCANNNNNTGG	1 cut(s)	84
AccBSI	CCGCTC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	870
AccII	CGCG	1 cut(s)	180
AciI	CCGC	6 cut(s)	159, 171, 178, 180, 411, 747
AclWI	GGATC	4 cut(s)	188, 201, 208, 595
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflII	CTTAAG	2 cut(s)	451, 935
AgsI	TTSAA	2 cut(s)	145, 772
AjnI	CCWGG	2 cut(s)	119, 292
AluBI	AGCT	6 cut(s)	75, 81, 365, 372, 762, 839
AluI	AGCT	6 cut(s)	75, 81, 365, 372, 762, 839
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	4 cut(s)	188, 201, 208, 595
AlwNI	CAGNNNCTG	2 cut(s)	839, 842
AoxI	GGCC	4 cut(s)	138, 230, 296, 816
ApaI	GGGCCC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	456
AspLEI	GCGC	2 cut(s)	13, 406
AspS9I	GGNCC	5 cut(s)	290, 296, 297, 388, 928
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	247, 494
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	3 cut(s)	290, 388, 928
AxyI	CCTNAGG	1 cut(s)	558
BaeGI	GKGCMC	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	570
BbsI	GAAGAC	2 cut(s)	702, 868
BbvCI	CCTCAGC	1 cut(s)	846
BccI	CCATC	3 cut(s)	143, 388, 462
BciT130I	CCWGG	2 cut(s)	121, 294
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	5 cut(s)	108, 347, 407, 632, 830
BfmI	CTRYAG	1 cut(s)	874
BfrI	CTTAAG	2 cut(s)	451, 935
BfuAI	ACCTGC	1 cut(s)	893
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	3 cut(s)	121, 198, 294
Bme18I	GGWCC	3 cut(s)	290, 388, 928
BmgT120I	GGNCC	5 cut(s)	290, 296, 297, 388, 928
BmiI	GGNNCC	7 cut(s)	195, 216, 265, 291, 298, 389, 390
BmrFI	CCNGG	3 cut(s)	121, 198, 294
BmrI	ACTGGG	1 cut(s)	296
BmtI	GCTAGC	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	296
BpiI	GAAGAC	2 cut(s)	702, 868
BpmI	CTGGAG	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	846
BpuMI	CCSGG	1 cut(s)	198
BsaJI	CCNNGG	4 cut(s)	119, 120, 178, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	5 cut(s)	291, 424, 605, 689, 866
Bse21I	CCTNAGG	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	121, 294
BseDI	CCNNGG	4 cut(s)	119, 120, 178, 293
BseGI	GGATG	3 cut(s)	90, 473, 814
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	549, 837
BseNI	ACTGG	5 cut(s)	291, 424, 605, 689, 866
BseRI	GAGGAG	1 cut(s)	800
BseSI	GKGCMC	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	4 cut(s)	140, 232, 298, 818
BsiSI	CCGG	2 cut(s)	197, 233
BslFI	GGGAC	2 cut(s)	303, 401
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	303, 401
BsnI	GGCC	4 cut(s)	140, 232, 298, 818
Bsp120I	GGGCCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	193, 200, 587, 826
BspACI	CCGC	6 cut(s)	159, 171, 178, 180, 411, 747
BspANI	GGCC	4 cut(s)	140, 232, 298, 818
BspCNI	CTCAG	2 cut(s)	550, 838
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	7 cut(s)	195, 216, 265, 291, 298, 389, 390
BspMAI	CTGCAG	1 cut(s)	878
BspMI	ACCTGC	1 cut(s)	893
BspOI	GCTAGC	1 cut(s)	410
BspPI	GGATC	4 cut(s)	188, 201, 208, 595
BspTI	CTTAAG	2 cut(s)	451, 935
BsrBI	CCGCTC	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	5 cut(s)	291, 424, 605, 689, 866
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	4 cut(s)	119, 120, 178, 293
BssMI	GATC	4 cut(s)	193, 200, 587, 826
BssSI	CACGAG	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	2 cut(s)	121, 294
Bst4CI	ACNGT	2 cut(s)	64, 101
Bst6I	CTCTTC	1 cut(s)	510
BstAFI	CTTAAG	2 cut(s)	451, 935
BstAPI	GCANNNNNTGC	2 cut(s)	839, 842
BstC8I	GCNNGC	4 cut(s)	157, 182, 370, 408
BstDEI	CTNAG	3 cut(s)	395, 558, 846
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	3 cut(s)	90, 473, 814
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	13, 406
BstKTI	GATC	4 cut(s)	196, 203, 590, 829
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	4 cut(s)	193, 200, 587, 826
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 78, 177, 410, 799, 839, 842, 848, 851
BstNI	CCWGG	2 cut(s)	121, 294
BstSCI	CCNGG	3 cut(s)	119, 196, 292
BstSFI	CTRYAG	1 cut(s)	874
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	1 cut(s)	180
BstV2I	GAAGAC	2 cut(s)	702, 868
BstX2I	RGATCY	2 cut(s)	193, 587
BstYI	RGATCY	2 cut(s)	193, 587
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	4 cut(s)	140, 232, 298, 818
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	90, 473, 814
BtsIMutI	CAGTG	1 cut(s)	696
BveI	ACCTGC	1 cut(s)	893
Cac8I	GCNNGC	4 cut(s)	157, 182, 370, 408
CaiI	CAGNNNCTG	2 cut(s)	839, 842
CfoI	GCGC	2 cut(s)	13, 406
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	5 cut(s)	290, 296, 297, 388, 928
Cfr42I	CCGCGG	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	84
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	3 cut(s)	395, 558, 846
DpnI	GATC	4 cut(s)	195, 202, 589, 828
DpnII	GATC	4 cut(s)	193, 200, 587, 826
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	736
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	3 cut(s)	290, 388, 928
Eco57I	CTGAAG	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	558
EcoO109I	RGGNCCY	4 cut(s)	290, 297, 388, 928
EcoRII	CCWGG	2 cut(s)	119, 292
EcoT38I	GRGCYC	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	1 cut(s)	87
FaiI	YATR	5 cut(s)	85, 477, 506, 531, 776
FaqI	GGGAC	2 cut(s)	303, 401
FatI	CATG	1 cut(s)	83
FauI	CCCGC	2 cut(s)	152, 173
FblI	GTMKAC	1 cut(s)	870
FokI	GGATG	3 cut(s)	77, 480, 821
FriOI	GRGCYC	1 cut(s)	300
FspBI	CTAG	5 cut(s)	108, 347, 407, 632, 830
GlaI	GCGC	2 cut(s)	12, 405
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	4 cut(s)	140, 232, 298, 818
HapII	CCGG	2 cut(s)	197, 233
HhaI	GCGC	2 cut(s)	13, 406
Hin1II	CATG	1 cut(s)	87
Hin6I	GCGC	2 cut(s)	11, 404
HinP1I	GCGC	2 cut(s)	11, 404
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	3 cut(s)	312, 579, 628
HpaII	CCGG	2 cut(s)	197, 233
HphI	GGTGA	2 cut(s)	247, 494
Hpy166II	GTNNAC	2 cut(s)	871, 908
Hpy188I	TCNGA	5 cut(s)	8, 205, 255, 317, 739
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	2 cut(s)	871, 908
HpyAV	CCTTC	3 cut(s)	105, 250, 808
HpyCH4III	ACNGT	2 cut(s)	64, 101
HpyCH4V	TGCA	5 cut(s)	362, 368, 876, 896, 918
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 78, 177, 410, 799, 839, 842, 848, 851
HpyF3I	CTNAG	3 cut(s)	395, 558, 846
Hsp92II	CATG	1 cut(s)	87
HspAI	GCGC	2 cut(s)	11, 404
KflI	GGGWCCC	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	193, 200, 587, 826
LmnI	GCTCC	3 cut(s)	9, 80, 263
MaeI	CTAG	5 cut(s)	108, 347, 407, 632, 830
MaeIII	GTNAC	4 cut(s)	58, 331, 572, 655
MalI	GATC	4 cut(s)	195, 202, 589, 828
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	4 cut(s)	193, 200, 587, 826
MboII	GAAGA	3 cut(s)	527, 707, 873
MflI	RGATCY	2 cut(s)	193, 587
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	4 cut(s)	207, 456, 614, 797
MlyI	GAGTC	3 cut(s)	306, 573, 622
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	9 cut(s)	51, 205, 311, 402, 553, 760, 778, 841, 919
MseI	TTAA	4 cut(s)	375, 452, 795, 936
MspA1I	CMGCKG	4 cut(s)	180, 365, 413, 839
MspCI	CTTAAG	2 cut(s)	451, 935
MspI	CCGG	2 cut(s)	197, 233
MspR9I	CCNGG	3 cut(s)	121, 198, 294
MvaI	CCWGG	2 cut(s)	121, 294
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	9 cut(s)	10, 78, 177, 410, 799, 839, 842, 848, 851
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	193, 200, 587, 826
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	87
NlaIV	GGNNCC	7 cut(s)	195, 216, 265, 291, 298, 389, 390
NmuCI	GTSAC	2 cut(s)	58, 572
PaqCI	CACCTGC	1 cut(s)	893
PasI	CCCWGGG	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	196
PleI	GAGTC	3 cut(s)	306, 573, 622
PpsI	GAGTC	3 cut(s)	306, 573, 622
PpuMI	RGGWCCY	3 cut(s)	290, 388, 928
Psp5II	RGGWCCY	3 cut(s)	290, 388, 928
Psp6I	CCWGG	2 cut(s)	119, 292
PspGI	CCWGG	2 cut(s)	119, 292
PspN4I	GGNNCC	7 cut(s)	195, 216, 265, 291, 298, 389, 390
PspOMI	GGGCCC	1 cut(s)	296
PspPI	GGNCC	5 cut(s)	290, 296, 297, 388, 928
PspPPI	RGGWCCY	3 cut(s)	290, 388, 928
PstI	CTGCAG	1 cut(s)	878
PstNI	CAGNNNCTG	2 cut(s)	839, 842
PsuI	RGATCY	2 cut(s)	193, 587
PvuII	CAGCTG	2 cut(s)	365, 839
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacII	CCGCGG	1 cut(s)	181
SaqAI	TTAA	4 cut(s)	375, 452, 795, 936
Sau3AI	GATC	4 cut(s)	193, 200, 587, 826
Sau96I	GGNCC	5 cut(s)	290, 296, 297, 388, 928
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	3 cut(s)	306, 573, 622
ScrFI	CCNGG	3 cut(s)	121, 198, 294
SduI	GDGCHC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	874
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SinI	GGWCC	3 cut(s)	290, 388, 928
SmlI	CTYRAG	2 cut(s)	451, 935
SmoI	CTYRAG	2 cut(s)	451, 935
Sse9I	AATT	4 cut(s)	207, 456, 614, 797
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	6 cut(s)	159, 171, 178, 180, 411, 747
SspMI	CTAG	5 cut(s)	108, 347, 407, 632, 830
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	119, 196, 292
TaaI	ACNGT	2 cut(s)	64, 101
TaqI	TCGA	1 cut(s)	310
TasI	AATT	4 cut(s)	207, 456, 614, 797
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	2 cut(s)	174, 413
Tru1I	TTAA	4 cut(s)	375, 452, 795, 936
Tru9I	TTAA	4 cut(s)	375, 452, 795, 936
TscAI	CASTG	1 cut(s)	696
TseFI	GTSAC	2 cut(s)	58, 572
Tsp45I	GTSAC	2 cut(s)	58, 572
TspGWI	ACGGA	4 cut(s)	276, 549, 821, 873
TspRI	CASTG	1 cut(s)	696
Van91I	CCANNNNNTGG	1 cut(s)	84
Vha464I	CTTAAG	2 cut(s)	451, 935
VpaK11BI	GGWCC	3 cut(s)	290, 388, 928
XapI	RAATTY	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	870
XspI	CTAG	5 cut(s)	108, 347, 407, 632, 830
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.