Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010952.1

Orthogroup ID

OG0007147

Physical Location & Seq

Genomic Coordinates Forward (+)

53006 .. 56168

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010952.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgctccgggtagatgtgtattgctctctactttctagtccccgacaagtcaagttggtaaatgtcggcagcagaagtttagggtcatggcagatccagcagcgtagcgctcaaagactacccaaggggatttctgtcaaggccgtgaatgatgggacgggagggggaacaagcggatttcggggtcagagctgggagcctgggtcagaaattgaggttccttttgaacaaagaccggtgaatgagtactcatctttgaaggaaggaaccttgtactcgtggggcaatctgggaccggggccttttttccttcgtcttggaggtttgtggttggtaacattcacagttttaggagcgcccatagcagctgcaagctttaatccatcaagggaccctctacgatttgttctagcagctggaaccggaactcttttccttgtatcgttgatcgtcttaagaatttatctgggatggagttacgttggcgatagactactatcagcagtcataccttacgaagagactggatggtatgatggacaaatgtgggtgaaaccacctgaggtcctggctcgtgacagacttttgggctcttacaaggttaaaccagtcatcaagttgctgaaacagactctagtcggaacaggggtattgcttgtttcagcagtgatgctattcatctttgctacaccagtggaggatttcgttcaaaccacattttctacaaaagaaaactcatcaaatgtttctgtctcaaaactgagaagagaagaattgcttaaattgcctacggaagtaaaatctgatgatgacctagcagcagctgctgctgaggcggcagacggaagaccagtctactgcagagataggttttatcgtgcactagcaggtgacaatactgcaagtcggatgatctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009605 GO:0009991 GO:0031667 GO:0042594 GO:0050896 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1230

Protein Analysis

306

Amino Acids

33.61

Weight (kDa)

9.26

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67370
fragaria_vesca	FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200
malus_domestica	MD02G1181900.v1.1 MD15G1293200.v1.1
prunus_persica	Prupe.6G224400_v2.0.a1 Prupe.6G224400_v2.0.a1
pyrus_communis	pycom02g14750 pycom15g25620
rosa_chinensis	RchiOBHm_Chr2g0107351
rosa_laevigata	RLG00000017572
rosa_multiflora	Rmu_co8510805.1_g000001 Rmu_sc0010952.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136410
rosa_rugosa	Rorug02G0142300 Rorug02G0142400 Rorug02G0142500
rosa_samantha	Rh2AG193000 Rh2BG205200 Rh2CG198300 Rh2DG200300
rosa_wichuraiana	Rw2G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	878
Acc36I	ACCTGC	1 cut(s)	878
AccI	GTMKAC	1 cut(s)	855
AciI	CCGC	2 cut(s)	174, 836
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	459
AfaI	GTAC	2 cut(s)	248, 275
AfeI	AGCGCT	1 cut(s)	109
AflII	CTTAAG	1 cut(s)	454
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	227, 259, 710
AjnI	CCWGG	2 cut(s)	199, 567
AluBI	AGCT	5 cut(s)	192, 368, 375, 416, 824
AluI	AGCT	5 cut(s)	192, 368, 375, 416, 824
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	2 cut(s)	515, 757
Alw44I	GTGCAC	1 cut(s)	879
AlwI	GGATC	1 cut(s)	88
AlwNI	CAGNNNCTG	2 cut(s)	824, 827
Aor51HI	AGCGCT	1 cut(s)	109
AoxI	GGCC	2 cut(s)	141, 299
ApaLI	GTGCAC	1 cut(s)	879
ApeKI	GCWGC	9 cut(s)	69, 100, 365, 368, 413, 818, 821, 824, 827
ApoI	RAATTY	1 cut(s)	459
AsiGI	ACCGGT	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	110, 358
AspS9I	GGNCC	4 cut(s)	293, 299, 391, 565
AsuC2I	CCSGG	2 cut(s)	8, 297
AsuHPI	GGTGA	3 cut(s)	250, 562, 902
AvaII	GGWCC	3 cut(s)	293, 391, 565
AxyI	CCTNAGG	1 cut(s)	561
BaeGI	GKGCMC	1 cut(s)	883
BanII	GRGCYC	1 cut(s)	593
BauI	CACGAG	2 cut(s)	277, 573
BbsI	GAAGAC	1 cut(s)	853
Bbv12I	GWGCWC	1 cut(s)	883
BbvCI	CCTCAGC	1 cut(s)	831
BbvI	GCAGC	9 cut(s)	81, 112, 355, 377, 425, 811, 814, 830, 833
BccI	CCATC	5 cut(s)	146, 391, 465, 522, 530
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	2 cut(s)	201, 569
BcnI	CCSGG	2 cut(s)	8, 297
BcoDI	GTCTC	2 cut(s)	515, 757
BfaI	CTAG	5 cut(s)	36, 410, 635, 815, 884
BfmI	CTRYAG	1 cut(s)	859
BfoI	RGCGCY	2 cut(s)	111, 359
BfrI	CTTAAG	1 cut(s)	454
BfuAI	ACCTGC	1 cut(s)	878
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	4 cut(s)	8, 201, 297, 569
Bme18I	GGWCC	3 cut(s)	293, 391, 565
BmgT120I	GGNCC	4 cut(s)	293, 299, 391, 565
BmiI	GGNNCC	8 cut(s)	198, 219, 268, 294, 300, 392, 393, 421
BmrFI	CCNGG	4 cut(s)	8, 201, 297, 569
BmsI	GCATC	1 cut(s)	660
BoxI	GACNNNNGTC	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	853
Bpu10I	CCTNAGC	1 cut(s)	831
BpuMI	CCSGG	2 cut(s)	8, 297
BsaJI	CCNNGG	3 cut(s)	123, 200, 296
BsaWI	WCCGGW	2 cut(s)	235, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	4 cut(s)	529, 608, 692, 851
Bse21I	CCTNAGG	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	201, 569
BseDI	CCNNGG	3 cut(s)	123, 200, 296
BseGI	GGATG	3 cut(s)	476, 533, 915
BseMII	CTCAG	3 cut(s)	552, 752, 822
BseNI	ACTGG	4 cut(s)	529, 608, 692, 851
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	9 cut(s)	81, 112, 355, 377, 425, 811, 814, 830, 833
BseYI	CCCAGC	1 cut(s)	192
BshFI	GGCC	2 cut(s)	143, 301
BshTI	ACCGGT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	883
BsiSI	CCGG	4 cut(s)	7, 236, 296, 423
BslFI	GGGAC	4 cut(s)	24, 169, 306, 404
BsmAI	GTCTC	2 cut(s)	515, 757
BsmFI	GGGAC	4 cut(s)	24, 169, 306, 404
BsnI	GGCC	2 cut(s)	143, 301
Bsp1286I	GDGCHC	2 cut(s)	593, 883
Bsp143I	GATC	3 cut(s)	93, 447, 912
BspACI	CCGC	2 cut(s)	174, 836
BspANI	GGCC	2 cut(s)	143, 301
BspCNI	CTCAG	3 cut(s)	553, 753, 823
BspLI	GGNNCC	8 cut(s)	198, 219, 268, 294, 300, 392, 393, 421
BspMAI	CTGCAG	1 cut(s)	863
BspMI	ACCTGC	1 cut(s)	878
BspPI	GGATC	1 cut(s)	88
BspTI	CTTAAG	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	4 cut(s)	529, 608, 692, 851
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	123, 200, 296
BssMI	GATC	3 cut(s)	93, 447, 912
BssSI	CACGAG	2 cut(s)	277, 573
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	2 cut(s)	277, 573
Bst2UI	CCWGG	2 cut(s)	201, 569
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	513, 760
BstAFI	CTTAAG	1 cut(s)	454
BstAPI	GCANNNNNTGC	2 cut(s)	824, 827
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	561, 761, 831
BstF5I	GGATG	3 cut(s)	476, 533, 915
BstH2I	RGCGCY	2 cut(s)	111, 359
BstHHI	GCGC	2 cut(s)	110, 358
BstKTI	GATC	3 cut(s)	96, 450, 915
BstMAI	GTCTC	2 cut(s)	515, 757
BstMBI	GATC	3 cut(s)	93, 447, 912
BstMWI	GCNNNNNNNGC	7 cut(s)	97, 362, 784, 824, 827, 833, 836
BstNI	CCWGG	2 cut(s)	201, 569
BstPAI	GACNNNNGTC	1 cut(s)	635
BstSCI	CCNGG	4 cut(s)	6, 199, 295, 567
BstSFI	CTRYAG	1 cut(s)	859
BstSLI	GKGCMC	1 cut(s)	883
BstV1I	GCAGC	9 cut(s)	81, 112, 355, 377, 425, 811, 814, 830, 833
BstV2I	GAAGAC	1 cut(s)	853
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	143, 301
BtsCI	GGATG	3 cut(s)	476, 533, 915
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	2 cut(s)	672, 699
BveI	ACCTGC	1 cut(s)	878
Cac8I	GCNNGC	1 cut(s)	373
CaiI	CAGNNNCTG	2 cut(s)	824, 827
CfoI	GCGC	2 cut(s)	110, 358
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	4 cut(s)	293, 299, 391, 565
Csp6I	GTAC	2 cut(s)	247, 274
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	1 cut(s)	87
CviQI	GTAC	2 cut(s)	247, 274
DdeI	CTNAG	3 cut(s)	561, 761, 831
DpnI	GATC	3 cut(s)	95, 449, 914
DpnII	GATC	3 cut(s)	93, 447, 912
Eam1104I	CTCTTC	2 cut(s)	513, 760
EarI	CTCTTC	2 cut(s)	513, 760
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	593
Eco47I	GGWCC	3 cut(s)	293, 391, 565
Eco47III	AGCGCT	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	561
EcoO109I	RGGNCCY	3 cut(s)	299, 391, 565
EcoRII	CCWGG	2 cut(s)	199, 567
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	90
FaiI	YATR	4 cut(s)	88, 362, 509, 534
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FaqI	GGGAC	4 cut(s)	24, 169, 306, 404
FatI	CATG	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	855
FokI	GGATG	2 cut(s)	483, 540
FriOI	GRGCYC	1 cut(s)	593
FspBI	CTAG	5 cut(s)	36, 410, 635, 815, 884
GlaI	GCGC	2 cut(s)	109, 357
GsaI	CCCAGC	1 cut(s)	196
HaeII	RGCGCY	2 cut(s)	111, 359
HaeIII	GGCC	2 cut(s)	143, 301
HapII	CCGG	4 cut(s)	7, 236, 296, 423
HhaI	GCGC	2 cut(s)	110, 358
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	2 cut(s)	108, 356
HinP1I	GCGC	2 cut(s)	108, 356
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	1 cut(s)	631
HpaII	CCGG	4 cut(s)	7, 236, 296, 423
HphI	GGTGA	3 cut(s)	250, 562, 902
Hpy166II	GTNNAC	2 cut(s)	856, 881
Hpy188I	TCNGA	5 cut(s)	189, 208, 641, 805, 909
Hpy188III	TCNNGA	1 cut(s)	575
Hpy8I	GTNNAC	2 cut(s)	856, 881
HpyAV	CCTTC	3 cut(s)	253, 257, 320
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	4 cut(s)	371, 861, 881, 902
HpyF10VI	GCNNNNNNNGC	7 cut(s)	97, 362, 784, 824, 827, 833, 836
HpyF3I	CTNAG	3 cut(s)	561, 761, 831
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	2 cut(s)	108, 356
KflI	GGGWCCC	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	93, 447, 912
LmnI	GCTCC	3 cut(s)	9, 196, 353
Lsp1109I	GCAGC	9 cut(s)	81, 112, 355, 377, 425, 811, 814, 830, 833
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	5 cut(s)	36, 410, 635, 815, 884
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	4 cut(s)	334, 476, 575, 890
MalI	GATC	3 cut(s)	95, 449, 914
MboI	GATC	3 cut(s)	93, 447, 912
MboII	GAAGA	4 cut(s)	530, 777, 782, 858
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	593, 883
MluCI	AATT	4 cut(s)	210, 459, 773, 782
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	2 cut(s)	619, 887
MnlI	CCTC	7 cut(s)	155, 208, 314, 405, 556, 691, 826
MseI	TTAA	4 cut(s)	378, 455, 603, 780
MspA1I	CMGCKG	3 cut(s)	368, 416, 824
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	4 cut(s)	7, 236, 296, 423
MspR9I	CCNGG	4 cut(s)	8, 201, 297, 569
MvaI	CCWGG	2 cut(s)	201, 569
MwoI	GCNNNNNNNGC	7 cut(s)	97, 362, 784, 824, 827, 833, 836
NciI	CCSGG	2 cut(s)	8, 297
NdeII	GATC	3 cut(s)	93, 447, 912
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	8 cut(s)	198, 219, 268, 294, 300, 392, 393, 421
NmuCI	GTSAC	2 cut(s)	575, 890
PaqCI	CACCTGC	1 cut(s)	878
PinAI	ACCGGT	1 cut(s)	235
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PpuMI	RGGWCCY	2 cut(s)	391, 565
PshAI	GACNNNNGTC	1 cut(s)	635
Psp5II	RGGWCCY	2 cut(s)	391, 565
Psp6I	CCWGG	2 cut(s)	199, 567
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	2 cut(s)	199, 567
PspN4I	GGNNCC	8 cut(s)	198, 219, 268, 294, 300, 392, 393, 421
PspPI	GGNCC	4 cut(s)	293, 299, 391, 565
PspPPI	RGGWCCY	2 cut(s)	391, 565
PstI	CTGCAG	1 cut(s)	863
PstNI	CAGNNNCTG	2 cut(s)	824, 827
PsuI	RGATCY	1 cut(s)	93
PvuII	CAGCTG	3 cut(s)	368, 416, 824
RsaI	GTAC	2 cut(s)	248, 275
RsaNI	GTAC	2 cut(s)	247, 274
SaqAI	TTAA	4 cut(s)	378, 455, 603, 780
Sau3AI	GATC	3 cut(s)	93, 447, 912
Sau96I	GGNCC	4 cut(s)	293, 299, 391, 565
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	4 cut(s)	8, 201, 297, 569
SduI	GDGCHC	2 cut(s)	593, 883
SfaNI	GCATC	1 cut(s)	660
SfcI	CTRYAG	1 cut(s)	859
SinI	GGWCC	3 cut(s)	293, 391, 565
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	4 cut(s)	210, 459, 773, 782
SsiI	CCGC	2 cut(s)	174, 836
SspMI	CTAG	5 cut(s)	36, 410, 635, 815, 884
StyD4I	CCNGG	4 cut(s)	6, 199, 295, 567
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	483
TasI	AATT	4 cut(s)	210, 459, 773, 782
TatI	WGTACW	2 cut(s)	246, 273
TauI	GCSGC	1 cut(s)	839
Tru1I	TTAA	4 cut(s)	378, 455, 603, 780
Tru9I	TTAA	4 cut(s)	378, 455, 603, 780
TscAI	CASTG	2 cut(s)	672, 699
TseFI	GTSAC	2 cut(s)	575, 890
TseI	GCWGC	9 cut(s)	69, 100, 365, 368, 413, 818, 821, 824, 827
Tsp45I	GTSAC	2 cut(s)	575, 890
TspDTI	ATGAA	1 cut(s)	667
TspGWI	ACGGA	2 cut(s)	806, 858
TspRI	CASTG	2 cut(s)	672, 699
Vha464I	CTTAAG	1 cut(s)	454
VneI	GTGCAC	1 cut(s)	879
VpaK11BI	GGWCC	3 cut(s)	293, 391, 565
XapI	RAATTY	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	855
XspI	CTAG	5 cut(s)	36, 410, 635, 815, 884
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.