Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007147

Physical Location & Seq

Genomic Coordinates Forward (+)

74116466 .. 74119538

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCTCCGGGTAGATGTGTATTGCTCTCTACTTTCTAGTCCTCGACAAGTCAAGTTGGTAAATGTCGGCAGCAGAAGTTTAGGGTCATGGCAGATCCAGCAGCGTAGCGCTCAAAGACTACCCAAGGGGATTTCTGTCAAGGCCGTGAAAGATGGGACGGGAGGGGGAACAAGCGGATTTCGGGGTCAGAGCTGGGAGCCTGGGTCAGAAATTGAGGTTCCTTTTGAACAAAGACCGGTGAATGAGTACTCGTCTTTGAAGGAAGGAACCTTGTACTCGTGGGGCGATCTGGGACCGGGGCCTTTTTTCCTTCGTCTTGGAGGTTTGTGGTTGGTAACATTCACAGTTTTAGGAGCGCCCATAGCAGCTGCAAGCTTTAATCCATCAAGGGGATGGAGTTACGTTGGCGATAGACTACTATCAGCAGTCATACCTTACGAAGAGACTGGATGGTATGATGGACAAATGTGGGTGAAACCACCTGAGGTTAAACCAGTCATCAAGTTGCTGAAACAGACTCTAGTCGGAACAGGGGTATTGCTTGTTTCAGCAGTGATGCTATTCATCTTTGCTACACCAGTGGAGGATTTCGTTCAAACCACATTTTCTACAAAAGAAAACTCATCAAATGTTTCTGTCTCAAAACTGAGGTTCAACCTAACATTCAATAGACAGATAGAGATTCCAAACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009605 GO:0009991 GO:0031667 GO:0042594 GO:0050896 GO:1990641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1230

Protein Analysis

231

Amino Acids

25.45

Weight (kDa)

9.38

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CGLD27-like	PF06799	72 - 129	1.9e-11	Conserved in the green lineage and diatoms 27
CGLD27-like	PF06799	131 - 172	4.8e-16	Conserved in the green lineage and diatoms 27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67370
fragaria_vesca	FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200 FvH4_1g17200
malus_domestica	MD02G1181900.v1.1 MD15G1293200.v1.1
prunus_persica	Prupe.6G224400_v2.0.a1 Prupe.6G224400_v2.0.a1
pyrus_communis	pycom02g14750 pycom15g25620
rosa_chinensis	RchiOBHm_Chr2g0107351
rosa_laevigata	RLG00000017572
rosa_multiflora	Rmu_co8510805.1_g000001 Rmu_sc0010952.1_g000013
rosa_roxburghii	Rroxscaffold_2G00136410
rosa_rugosa	Rorug02G0142300 Rorug02G0142400 Rorug02G0142500
rosa_samantha	Rh2AG193000 Rh2BG205200 Rh2CG198300 Rh2DG200300
rosa_wichuraiana	Rw2G015290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	88
AfaI	GTAC	2 cut(s)	248, 275
AfeI	AGCGCT	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	227, 259, 596, 655, 667
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	3 cut(s)	192, 368, 375
AluI	AGCT	3 cut(s)	192, 368, 375
Alw26I	GTCTC	2 cut(s)	437, 643
AlwI	GGATC	1 cut(s)	88
Aor51HI	AGCGCT	1 cut(s)	109
AoxI	GGCC	2 cut(s)	141, 299
ApeKI	GCWGC	4 cut(s)	69, 100, 365, 368
AsiGI	ACCGGT	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	110, 358
AspS9I	GGNCC	2 cut(s)	293, 299
AsuC2I	CCSGG	2 cut(s)	8, 297
AsuHPI	GGTGA	2 cut(s)	250, 484
AvaII	GGWCC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	483
BauI	CACGAG	1 cut(s)	277
BbvI	GCAGC	4 cut(s)	81, 112, 355, 377
BccI	CCATC	5 cut(s)	146, 387, 391, 444, 452
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	201
BcnI	CCSGG	2 cut(s)	8, 297
BcoDI	GTCTC	2 cut(s)	437, 643
BfaI	CTAG	2 cut(s)	36, 521
BfoI	RGCGCY	2 cut(s)	111, 359
BisI	GCNGC	4 cut(s)	70, 101, 366, 369
BlsI	GCNGC	4 cut(s)	71, 102, 367, 370
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	3 cut(s)	8, 201, 297
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	293, 299
BmiI	GGNNCC	5 cut(s)	198, 219, 268, 294, 300
BmrFI	CCNGG	3 cut(s)	8, 201, 297
BmsI	GCATC	1 cut(s)	546
BoxI	GACNNNNGTC	1 cut(s)	521
BpuMI	CCSGG	2 cut(s)	8, 297
BsaJI	CCNNGG	3 cut(s)	123, 200, 296
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	3 cut(s)	451, 494, 578
Bse21I	CCTNAGG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	123, 200, 296
BseGI	GGATG	2 cut(s)	398, 455
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	474, 638
BseNI	ACTGG	3 cut(s)	451, 494, 578
BseXI	GCAGC	4 cut(s)	81, 112, 355, 377
BseYI	CCCAGC	1 cut(s)	192
BshFI	GGCC	2 cut(s)	143, 301
BshTI	ACCGGT	1 cut(s)	235
BsiSI	CCGG	3 cut(s)	7, 236, 296
BslFI	GGGAC	2 cut(s)	169, 306
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	437, 643
BsmFI	GGGAC	2 cut(s)	169, 306
BsnI	GGCC	2 cut(s)	143, 301
Bsp143I	GATC	2 cut(s)	93, 286
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	2 cut(s)	143, 301
BspCNI	CTCAG	2 cut(s)	475, 639
BspLI	GGNNCC	5 cut(s)	198, 219, 268, 294, 300
BspPI	GGATC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	3 cut(s)	451, 494, 578
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	123, 200, 296
BssMI	GATC	2 cut(s)	93, 286
BssSI	CACGAG	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	483, 647
BstF5I	GGATG	2 cut(s)	398, 455
BstH2I	RGCGCY	2 cut(s)	111, 359
BstHHI	GCGC	2 cut(s)	110, 358
BstKTI	GATC	2 cut(s)	96, 289
BstMAI	GTCTC	2 cut(s)	437, 643
BstMBI	GATC	2 cut(s)	93, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 362
BstNI	CCWGG	1 cut(s)	201
BstPAI	GACNNNNGTC	1 cut(s)	521
BstSCI	CCNGG	3 cut(s)	6, 199, 295
BstV1I	GCAGC	4 cut(s)	81, 112, 355, 377
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	143, 301
BtsCI	GGATG	2 cut(s)	398, 455
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	558, 585
Cac8I	GCNNGC	1 cut(s)	373
CfoI	GCGC	2 cut(s)	110, 358
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	293, 299
Csp6I	GTAC	2 cut(s)	247, 274
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	6 cut(s)	143, 192, 199, 301, 368, 375
CviKI_1	RGCY	6 cut(s)	143, 192, 199, 301, 368, 375
CviQI	GTAC	2 cut(s)	247, 274
DdeI	CTNAG	2 cut(s)	483, 647
DpnI	GATC	2 cut(s)	95, 288
DpnII	GATC	2 cut(s)	93, 286
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	293
Eco47III	AGCGCT	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	90
FaiI	YATR	4 cut(s)	88, 362, 431, 456
FaqI	GGGAC	2 cut(s)	169, 306
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	70, 101, 366, 369
FokI	GGATG	2 cut(s)	405, 462
Fsp4HI	GCNGC	4 cut(s)	70, 101, 366, 369
FspBI	CTAG	2 cut(s)	36, 521
GlaI	GCGC	2 cut(s)	109, 357
GluI	GCNGC	4 cut(s)	70, 101, 366, 369
GsaI	CCCAGC	1 cut(s)	196
HaeII	RGCGCY	2 cut(s)	111, 359
HaeIII	GGCC	2 cut(s)	143, 301
HapII	CCGG	3 cut(s)	7, 236, 296
HhaI	GCGC	2 cut(s)	110, 358
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	2 cut(s)	108, 356
HinP1I	GCGC	2 cut(s)	108, 356
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	2 cut(s)	517, 682
HpaII	CCGG	3 cut(s)	7, 236, 296
HphI	GGTGA	2 cut(s)	250, 484
Hpy188I	TCNGA	3 cut(s)	189, 208, 527
HpyAV	CCTTC	3 cut(s)	253, 257, 320
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 362
HpyF3I	CTNAG	2 cut(s)	483, 647
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	2 cut(s)	108, 356
Kzo9I	GATC	2 cut(s)	93, 286
LmnI	GCTCC	3 cut(s)	9, 196, 353
Lsp1109I	GCAGC	4 cut(s)	81, 112, 355, 377
LweI	GCATC	1 cut(s)	546
MaeI	CTAG	2 cut(s)	36, 521
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	334, 398
MalI	GATC	2 cut(s)	95, 288
MboI	GATC	2 cut(s)	93, 286
MboII	GAAGA	1 cut(s)	452
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	511
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	7 cut(s)	51, 155, 208, 314, 478, 577, 642
MseI	TTAA	2 cut(s)	378, 489
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	3 cut(s)	7, 236, 296
MspR9I	CCNGG	3 cut(s)	8, 201, 297
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	97, 362
NciI	CCSGG	2 cut(s)	8, 297
NdeII	GATC	2 cut(s)	93, 286
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	5 cut(s)	198, 219, 268, 294, 300
PfeI	GAWTC	1 cut(s)	682
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	4 cut(s)	71, 102, 367, 370
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PshAI	GACNNNNGTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	5 cut(s)	198, 219, 268, 294, 300
PspPI	GGNCC	2 cut(s)	293, 299
PsuI	RGATCY	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	248, 275
RsaNI	GTAC	2 cut(s)	247, 274
SaqAI	TTAA	2 cut(s)	378, 489
SatI	GCNGC	4 cut(s)	70, 101, 366, 369
Sau3AI	GATC	2 cut(s)	93, 286
Sau96I	GGNCC	2 cut(s)	293, 299
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	3 cut(s)	8, 201, 297
SfaNI	GCATC	1 cut(s)	546
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	174
SspMI	CTAG	2 cut(s)	36, 521
StyD4I	CCNGG	3 cut(s)	6, 199, 295
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	210
TatI	WGTACW	2 cut(s)	246, 273
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	2 cut(s)	378, 489
Tru9I	TTAA	2 cut(s)	378, 489
TscAI	CASTG	2 cut(s)	558, 585
TseI	GCWGC	4 cut(s)	69, 100, 365, 368
TspDTI	ATGAA	1 cut(s)	553
TspRI	CASTG	2 cut(s)	558, 585
VpaK11BI	GGWCC	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	390
XspI	CTAG	2 cut(s)	36, 521
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.