FvH4_1g17630

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003645
Physical Location & Seq
Forward (+)
10263955 .. 10266762
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17630.t1

Sequence Viewer

Length: 831 bp
ATGAGCAAGGGACCTGGACTCTTCGCCGACATCGGCAAAAAGGCCAAAGATCTTCTCACCAAGGACTACAACTCCGATCAGAAATTCAGCGTCTCCACCTACAGCGAAGCCGGTGTGGCTCTCACATCAACAGCAGTGAAAAGAGGAGGACTCTCTGCCGGGGACATTGGCGCACAATACAAATACAAGAATGCATTGGTTGATGTCAAAGTTGACACAGATTCAAATATCTCAACTACCTTCACAATCACAGATATTATTCCATCCACAAAGACTATTGCTTCATTCAAAGTGCCAGACTATAACGGTGGCAAGTTGGAAGTTCAGTACTTTCACGACCATGCCTCCTTCACCACAGCTGTTGCTTTGAATCAATGCCCAGCCATTGATTTTTCAGCTACCATTGGTACCCCAACCATTGCATTTGGTGCAGAAGCTGGTTATGACACCACTTCTGGAAACTTTACAAAGTACACTGCTGGATTTAGTGTGACACAACCGGTTTCCGTTGCTTCAATAATTCTGGGTGACAAGGGAGACAGTGTAAAAGCATCTTATGTCCATTATGTGGATCTGTTGAAGAGGAGTGCTGGTGTTATGGAAATCACCAGAAAGTTTTCCACAAACGAGAACACTTTCACAGTGGGAGGCCAATATGCTATTGATCCCTTGACGGTAGTGAAAGCGAAGCTCAACAATCATGGCAAGCTGGGAGCCCTCCTGCAGCATGAAGTGATACCAAAGTCTATGCTGACCGTATCTGGTGAGATTGACACCAAGTCCTTGGACAAACATCCCAAATTCGGGTTGGCCATTGCCCTCAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

277

Amino Acids

29.35

Weight (kDa)

8.68

Isoelectric Point (pI)

14.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 4 - 269 1.2e-76 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 568
AclWI GGATC 2 cut(s) 579, 659
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 2 cut(s) 83, 800
AfaI GTAC 3 cut(s) 329, 409, 473
AfiI CCNNNNNNNGG 3 cut(s) 568, 803, 804
AgeI ACCGGT 1 cut(s) 499
AgsI TTSAA 5 cut(s) 225, 289, 370, 516, 580
AhdI GACNNNNNGTC 1 cut(s) 778
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 5 cut(s) 359, 398, 437, 691, 709
AluI AGCT 5 cut(s) 359, 398, 437, 691, 709
Alw26I GTCTC 2 cut(s) 97, 531
AlwI GGATC 2 cut(s) 579, 659
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 3 cut(s) 42, 649, 810
ApeKI GCWGC 1 cut(s) 724
ApoI RAATTY 2 cut(s) 83, 800
AsiGI ACCGGT 1 cut(s) 499
Asp700I GAANNNNTTC 2 cut(s) 616, 635
Asp718I GGTACC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 5 cut(s) 49, 343, 539, 598, 776
AvaII GGWCC 1 cut(s) 11
BaeI ACNNNNGTAYC 2 cut(s) 728, 761
BalI TGGCCA 1 cut(s) 812
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 718
BbvI GCAGC 1 cut(s) 736
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 15
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 97, 531
BfmI CTRYAG 2 cut(s) 100, 722
BglI GCCNNNNNGGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 49
BisI GCNGC 1 cut(s) 725
BlsI GCNGC 1 cut(s) 726
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 15, 160
Bme18I GGWCC 1 cut(s) 11
BmeRI GACNNNNNGTC 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 3 cut(s) 12, 409, 715
BmrFI CCNGG 2 cut(s) 15, 160
BmsI GCATC 1 cut(s) 560
BplI GAGNNNNNCTC 2 cut(s) 135, 167
BpuEI CTTGAG 1 cut(s) 806
BpuMI CCSGG 1 cut(s) 160
BsaJI CCNNGG 3 cut(s) 60, 159, 783
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 8 cut(s) 56, 86, 329, 359, 528, 558, 577, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 568, 803, 804
Bse118I RCCGGY 2 cut(s) 110, 499
Bse3DI GCAATG 2 cut(s) 417, 813
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 3 cut(s) 60, 159, 783
BseGI GGATG 2 cut(s) 263, 793
BseLI CCNNNNNNNGG 3 cut(s) 568, 803, 804
BseMI GCAATG 2 cut(s) 417, 813
BseRI GAGGAG 2 cut(s) 159, 598
BseXI GCAGC 1 cut(s) 736
BseYI CCCAGC 2 cut(s) 379, 709
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 3 cut(s) 44, 651, 812
BshNI GGYRCC 1 cut(s) 407
BshTI ACCGGT 1 cut(s) 499
BsiSI CCGG 3 cut(s) 111, 159, 500
BslFI GGGAC 2 cut(s) 24, 176
BslI CCNNNNNNNGG 3 cut(s) 568, 803, 804
BsmAI GTCTC 2 cut(s) 97, 531
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 2 cut(s) 24, 176
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 3 cut(s) 44, 651, 812
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 4 cut(s) 49, 76, 571, 664
BspANI GGCC 3 cut(s) 44, 651, 812
BspLI GGNNCC 3 cut(s) 12, 409, 715
BspMAI CTGCAG 1 cut(s) 726
BspPI GGATC 2 cut(s) 579, 659
BspT107I GGYRCC 1 cut(s) 407
BsrDI GCAATG 2 cut(s) 417, 813
BsrFI RCCGGY 2 cut(s) 110, 499
BssAI RCCGGY 2 cut(s) 110, 499
BssECI CCNNGG 3 cut(s) 60, 159, 783
BssMI GATC 4 cut(s) 49, 76, 571, 664
BssT1I CCWWGG 2 cut(s) 60, 783
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 5 cut(s) 308, 542, 643, 676, 757
Bst6I CTCTTC 2 cut(s) 26, 575
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 707
BstF5I GGATG 2 cut(s) 263, 793
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 4 cut(s) 52, 79, 574, 667
BstMAI GTCTC 2 cut(s) 97, 531
BstMBI GATC 4 cut(s) 49, 76, 571, 664
BstMWI GCNNNNNNNGC 2 cut(s) 116, 428
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 13, 158
BstSFI CTRYAG 2 cut(s) 100, 722
BstV1I GCAGC 1 cut(s) 736
BstX2I RGATCY 2 cut(s) 49, 571
BstXI CCANNNNNNTGG 1 cut(s) 784
BstYI RGATCY 2 cut(s) 49, 571
BsuRI GGCC 3 cut(s) 44, 651, 812
BtsCI GGATG 2 cut(s) 263, 793
BtsI GCAGTG 2 cut(s) 141, 474
BtsIMutI CAGTG 4 cut(s) 141, 474, 547, 648
Cac8I GCNNGC 1 cut(s) 707
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 1 cut(s) 173
Cfr10I RCCGGY 2 cut(s) 110, 499
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 1 cut(s) 79
Csp6I GTAC 3 cut(s) 328, 408, 472
CspAI ACCGGT 1 cut(s) 499
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 3 cut(s) 341, 701, 728
CviQI GTAC 3 cut(s) 328, 408, 472
DpnI GATC 4 cut(s) 51, 78, 573, 666
DpnII GATC 4 cut(s) 49, 76, 571, 664
DriI GACNNNNNGTC 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 810
Eam1104I CTCTTC 2 cut(s) 26, 575
Eam1105I GACNNNNNGTC 1 cut(s) 778
EarI CTCTTC 2 cut(s) 26, 575
Eco130I CCWWGG 2 cut(s) 60, 783
Eco24I GRGCYC 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 60, 783
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 718
ErhI CCWWGG 2 cut(s) 60, 783
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 3 cut(s) 344, 704, 731
FaqI GGGAC 2 cut(s) 24, 176
FatI CATG 3 cut(s) 340, 700, 727
Fnu4HI GCNGC 1 cut(s) 725
FokI GGATG 2 cut(s) 250, 780
FriOI GRGCYC 1 cut(s) 718
Fsp4HI GCNGC 1 cut(s) 725
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 725
GsaI CCCAGC 2 cut(s) 383, 713
HaeIII GGCC 3 cut(s) 44, 651, 812
HapII CCGG 3 cut(s) 111, 159, 500
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 173
Hin1II CATG 3 cut(s) 344, 704, 731
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 4 cut(s) 18, 150, 221, 370
HpaII CCGG 3 cut(s) 111, 159, 500
HphI GGTGA 5 cut(s) 49, 343, 539, 598, 776
Hpy166II GTNNAC 2 cut(s) 214, 474
Hpy188I TCNGA 2 cut(s) 76, 81
Hpy188III TCNNGA 2 cut(s) 335, 456
Hpy8I GTNNAC 2 cut(s) 214, 474
HpyAV CCTTC 2 cut(s) 250, 358
HpyCH4III ACNGT 5 cut(s) 308, 542, 643, 676, 757
HpyCH4V TGCA 4 cut(s) 194, 422, 431, 724
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 428
Hsp92II CATG 3 cut(s) 344, 704, 731
HspAI GCGC 1 cut(s) 171
KpnI GGTACC 1 cut(s) 411
Kzo9I GATC 4 cut(s) 49, 76, 571, 664
LmnI GCTCC 1 cut(s) 713
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 1 cut(s) 560
MaeIII GTNAC 2 cut(s) 490, 527
MalI GATC 4 cut(s) 51, 78, 573, 666
MboI GATC 4 cut(s) 49, 76, 571, 664
MboII GAAGA 3 cut(s) 13, 44, 592
MflI RGATCY 2 cut(s) 49, 571
MhlI GDGCHC 1 cut(s) 718
MlsI TGGCCA 1 cut(s) 812
MluCI AATT 3 cut(s) 83, 519, 800
MluNI TGGCCA 1 cut(s) 812
MlyI GAGTC 2 cut(s) 12, 144
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 7 cut(s) 137, 140, 355, 576, 641, 728, 830
Mox20I TGGCCA 1 cut(s) 812
Mph1103I ATGCAT 1 cut(s) 196
MroXI GAANNNNTTC 2 cut(s) 616, 635
MscI TGGCCA 1 cut(s) 812
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 812
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 3 cut(s) 111, 159, 500
MspR9I CCNGG 2 cut(s) 15, 160
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 116, 428
NciI CCSGG 1 cut(s) 160
NdeII GATC 4 cut(s) 49, 76, 571, 664
NlaIII CATG 3 cut(s) 344, 704, 731
NlaIV GGNNCC 3 cut(s) 12, 409, 715
NmuCI GTSAC 2 cut(s) 490, 527
NsiI ATGCAT 1 cut(s) 196
PctI GAATGC 1 cut(s) 196
PdmI GAANNNNTTC 2 cut(s) 616, 635
PfeI GAWTC 2 cut(s) 221, 370
PflMI CCANNNNNTGG 1 cut(s) 568
PinAI ACCGGT 1 cut(s) 499
PkrI GCNGC 1 cut(s) 726
PleI GAGTC 2 cut(s) 12, 144
PpsI GAGTC 2 cut(s) 12, 144
PpuMI RGGWCCY 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 2 cut(s) 379, 709
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 3 cut(s) 12, 409, 715
PspPI GGNCC 1 cut(s) 11
PspPPI RGGWCCY 1 cut(s) 11
PstI CTGCAG 1 cut(s) 726
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 49, 571
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 3 cut(s) 329, 409, 473
RsaNI GTAC 3 cut(s) 328, 408, 472
RseI CAYNNNNRTG 1 cut(s) 339
SatI GCNGC 1 cut(s) 725
Sau3AI GATC 4 cut(s) 49, 76, 571, 664
Sau96I GGNCC 1 cut(s) 11
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 2 cut(s) 12, 144
ScrFI CCNGG 2 cut(s) 15, 160
SduI GDGCHC 1 cut(s) 718
SetI ASST 8 cut(s) 16, 101, 242, 361, 400, 439, 693, 711
SfaNI GCATC 1 cut(s) 560
SfcI CTRYAG 2 cut(s) 100, 722
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 3 cut(s) 83, 519, 800
StyD4I CCNGG 2 cut(s) 13, 158
StyI CCWWGG 2 cut(s) 60, 783
TaaI ACNGT 5 cut(s) 308, 542, 643, 676, 757
TasI AATT 3 cut(s) 83, 519, 800
TatI WGTACW 2 cut(s) 327, 471
TfiI GAWTC 2 cut(s) 221, 370
TscAI CASTG 4 cut(s) 141, 481, 547, 648
TseFI GTSAC 2 cut(s) 490, 527
TseI GCWGC 1 cut(s) 724
Tsp45I GTSAC 2 cut(s) 490, 527
TspDTI ATGAA 2 cut(s) 273, 744
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 4 cut(s) 141, 481, 547, 648
Van91I CCANNNNNTGG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 2 cut(s) 83, 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XmnI GAANNNNTTC 2 cut(s) 616, 635
ZrmI AGTACT 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.