Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8522085.1

Orthogroup ID

OG0003645

Physical Location & Seq

Genomic Coordinates Reverse (-)

5898 .. 7672

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8522085.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgtcaaccaaaggccctgctctcttctctgacattggcaaaagagccagagatctgctcaacaaggattacagctctgaccagaagatcagcatcaccacttacagtgacactggccttgccatcaactcctccttggccaagaaagggggtctctctcttggggatgtagcagctcagtacaaatacaagaaagctacggttgatatcaaagctgatacagaaacaactgtctcaacaaaactcaccgttacagacgtcctgccttcaacaaaagccattgcttcagtcagattccctgactacaaatctggcaagttggaagcacaatatcttcatgaacatgcatctttcacaacagctgttggtttgaacaagtcccccgccgttgacttttcagcaaccatcggtacccccaccattacttttggagcagaagctagttactcgacagcttccagaagattcactaaatatactgctggtgtcagcttgtcaaagccagattcctccgcttcagtaattctggctgacaaaggagactcgattaaggcatcatacctgcatcatctaagcaagctgaatgggggtgctgttgtgggagaggtaagtagaaggttttccacaaatgagaacacactcacagttggaggttcgtttgtggttgaccctcagactacagtaaaggcaaggcttaacaaccatgggaatcttgcggctcttttgcatcatgagcttagtcccaaatccaccttcacattctctggtgccttggacacgaagaccttacaaaaggagccgaaatttggtttggcactctccctcaagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

277

Amino Acids

29.4

Weight (kDa)

9.54

Isoelectric Point (pI)

21.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67500 AT5G67500 AT5G67500
fragaria_vesca	FvH4_1g17630 FvH4_2g33140
malus_domestica	MD02G1185100.v1.1 MD15G1070400.v1.1 MD15G1296700.v1.1
prunus_persica	Prupe.1G423200_v2.0.a1 Prupe.6G221700_v2.0.a1
pyrus_communis	pycom02g15000 pycom15g06620
rosa_chinensis	RchiOBHm_Chr2g0107951 RchiOBHm_Chr6g0309531
rosa_laevigata	RLG00000010556 RLG00000017628
rosa_multiflora	Rmu_co8522085.1_g000004 Rmu_sc0001484.1_g000031 Rmu_sc0007283.1_g000010 Rmu_sc0024715.1_g000005 Rmu_sc0030536.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135790 Rroxscaffold_7G00159330
rosa_rugosa	Rorug02G0148900.1 Rorug06G0372600
rosa_samantha	Rh2AG198200 Rh2BG211000 Rh2CG202800 Rh2DG205800 Rh6AG486000 Rh6BG495400 Rh6CG500400 Rh6DG486300
rosa_wichuraiana	Rw2G015720 Rw6G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	570
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	2 cut(s)	410, 767
AciI	CCGC	3 cut(s)	384, 513, 716
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	2 cut(s)	270, 501
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	182, 412
AfiI	CCNNNNNNNGG	2 cut(s)	147, 806
AgsI	TTSAA	2 cut(s)	270, 373
AjuI	GAANNNNNNNTTGG	4 cut(s)	737, 769, 794, 826
Alw26I	GTCTC	3 cut(s)	158, 238, 534
AoxI	GGCC	3 cut(s)	13, 115, 138
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	803
Asp700I	GAANNNNTTC	1 cut(s)	619
Asp718I	GGTACC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	88, 238
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	410, 767
BbsI	GAAGAC	1 cut(s)	788
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	2 cut(s)	131, 413
BceAI	ACGGC	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	158, 238, 534
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	678
BfuAI	ACCTGC	1 cut(s)	570
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	2 cut(s)	174, 717
BlsI	GCNGC	2 cut(s)	175, 718
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	412, 769, 798
BmsI	GCATC	5 cut(s)	102, 356, 563, 574, 736
BpiI	GAAGAC	1 cut(s)	788
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpuEI	CTTGAG	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	135, 703, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 806
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	92
BseDI	CCNNGG	3 cut(s)	135, 703, 771
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	147, 806
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	191, 686
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	185
BshFI	GGCC	3 cut(s)	15, 117, 140
BshNI	GGYRCC	2 cut(s)	410, 767
BslFI	GGGAC	2 cut(s)	364, 726
BslI	CCNNNNNNNGG	2 cut(s)	147, 806
BsmAI	GTCTC	3 cut(s)	158, 238, 534
BsmFI	GGGAC	2 cut(s)	364, 726
BsnI	GGCC	3 cut(s)	15, 117, 140
Bso31I	GGTCTC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	52, 87
Bsp19I	CCATGG	1 cut(s)	703
BspACI	CCGC	3 cut(s)	384, 513, 716
BspANI	GGCC	3 cut(s)	15, 117, 140
BspCNI	CTCAG	2 cut(s)	190, 685
BspHI	TCATGA	2 cut(s)	337, 730
BspLI	GGNNCC	3 cut(s)	412, 769, 798
BspMI	ACCTGC	1 cut(s)	570
BspT107I	GGYRCC	2 cut(s)	410, 767
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	135, 703, 771
BssMI	GATC	2 cut(s)	52, 87
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	3 cut(s)	135, 703, 771
Bst4CI	ACNGT	6 cut(s)	107, 202, 232, 250, 646, 682
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	578
BstDEI	CTNAG	4 cut(s)	177, 572, 672, 737
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	2 cut(s)	55, 90
BstMAI	GTCTC	3 cut(s)	158, 238, 534
BstMBI	GATC	2 cut(s)	52, 87
BstMWI	GCNNNNNNNGC	1 cut(s)	733
BstNSI	RCATGY	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	15, 117, 140
BtgI	CCRYGG	1 cut(s)	703
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	111, 112
BveI	ACCTGC	1 cut(s)	570
Cac8I	GCNNGC	1 cut(s)	578
CciI	TCATGA	2 cut(s)	337, 730
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	181, 411
CviAII	CATG	4 cut(s)	338, 344, 704, 731
CviQI	GTAC	2 cut(s)	181, 411
DdeI	CTNAG	4 cut(s)	177, 572, 672, 737
DpnI	GATC	2 cut(s)	54, 89
DpnII	GATC	2 cut(s)	52, 87
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	135, 703, 771
Eco31I	GGTCTC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	270, 501
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	3 cut(s)	135, 703, 771
EcoT22I	ATGCAT	1 cut(s)	349
ErhI	CCWWGG	3 cut(s)	135, 703, 771
FaeI	CATG	4 cut(s)	341, 347, 707, 734
FaiI	YATR	6 cut(s)	339, 345, 477, 559, 705, 732
FaqI	GGGAC	2 cut(s)	364, 726
FatI	CATG	4 cut(s)	337, 343, 703, 730
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	174, 717
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	174, 717
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	2 cut(s)	174, 717
HaeIII	GGCC	3 cut(s)	15, 117, 140
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	4 cut(s)	341, 347, 707, 734
HincII	GTYRAC	3 cut(s)	6, 391, 667
HindII	GTYRAC	3 cut(s)	6, 391, 667
HinfI	GANTC	5 cut(s)	294, 465, 506, 542, 709
HphI	GGTGA	2 cut(s)	88, 238
Hpy166II	GTNNAC	3 cut(s)	6, 391, 667
Hpy188I	TCNGA	4 cut(s)	31, 79, 293, 675
Hpy188III	TCNNGA	3 cut(s)	338, 459, 731
Hpy8I	GTNNAC	3 cut(s)	6, 391, 667
HpyAV	CCTTC	3 cut(s)	276, 609, 763
HpyCH4III	ACNGT	6 cut(s)	107, 202, 232, 250, 646, 682
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	347, 565, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	733
HpyF3I	CTNAG	4 cut(s)	177, 572, 672, 737
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	341, 347, 707, 734
KpnI	GGTACC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	52, 87
LmnI	GCTCC	2 cut(s)	431, 796
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	5 cut(s)	102, 356, 563, 574, 736
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	3 cut(s)	107, 250, 443
MalI	GATC	2 cut(s)	54, 89
MboI	GATC	2 cut(s)	52, 87
MboII	GAAGA	5 cut(s)	16, 97, 326, 474, 793
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	2 cut(s)	522, 803
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	2 cut(s)	300, 628
MnlI	CCTC	6 cut(s)	142, 520, 598, 644, 681, 833
Mox20I	TGGCCA	1 cut(s)	140
Mph1103I	ATGCAT	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	619
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	549, 696
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	733
NcoI	CCATGG	1 cut(s)	703
NdeII	GATC	2 cut(s)	52, 87
NlaIII	CATG	4 cut(s)	341, 347, 707, 734
NlaIV	GGNNCC	3 cut(s)	412, 769, 798
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	347
PagI	TCATGA	2 cut(s)	337, 730
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	4 cut(s)	294, 465, 506, 709
PkrI	GCNGC	2 cut(s)	175, 718
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	412, 769, 798
PspPI	GGNCC	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	182, 412
RsaNI	GTAC	2 cut(s)	181, 411
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	549, 696
SatI	GCNGC	2 cut(s)	174, 717
Sau3AI	GATC	2 cut(s)	52, 87
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	536
SfaNI	GCATC	5 cut(s)	102, 356, 563, 574, 736
SfcI	CTRYAG	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	2 cut(s)	522, 803
SsiI	CCGC	3 cut(s)	384, 513, 716
SspMI	CTAG	1 cut(s)	441
StyI	CCWWGG	3 cut(s)	135, 703, 771
TaaI	ACNGT	6 cut(s)	107, 202, 232, 250, 646, 682
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	449, 545
TasI	AATT	2 cut(s)	522, 803
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	4 cut(s)	294, 465, 506, 709
Tru1I	TTAA	2 cut(s)	549, 696
Tru9I	TTAA	2 cut(s)	549, 696
TscAI	CASTG	2 cut(s)	112, 118
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	326, 354
TspRI	CASTG	2 cut(s)	112, 118
XapI	RAATTY	1 cut(s)	803
XceI	RCATGY	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	619
XspI	CTAG	1 cut(s)	441
ZraI	GACGTC	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.