MD15G1070400.v1.1

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003645
Physical Location & Seq
Reverse (-)
4803491 .. 4805717
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1070400.v1.1.491

Sequence Viewer

Length: 837 bp
ATGTCGACCAGAGGCCCTGCCCTCTTCTCCGCCATTGGCAAGAAAGCCACAGACTTGCTTAACAGGGACTATAACACTGACCAGAAGATCAACATTACCACCTACACTGAAACTGGACTTGCCCTTAACTCGGGTTTGGCTAATAACGGAGGTCTGTCTTCTGGGGATATAGCAGCACAATACAAATACAAGAATGTCGCGCTCGATGTCAAAGCTGATACACAATCAAATGTGGTCTCAACAATGCTCACTGTCACTGACATCTTGCCTTCTACCAAAACCATCGCTTCAATCAAACTCCCTGATTACAAATCTGGCAAGTTGGAAGTCCAGTATCTTCACGAACATGCATCCTTCACAACCGCTGTTGGTCTGAACGAGTCCCCTGCTGTGGACTTTTCGGCAACCATTGGTACCCCGGCCATTGCCTTTGGAGCAGAAGCTAGTTTCTTGACAGGTTCCAGAGTGTTTTCTAAGTACAATGCCGGTGTCAGCTTTACACAGCACGATTCAACAGCTTCTGTGATTCTGGCTGACAAAGGAGATTCACTACGGGCGTCATACGTGCATCAACTGAGCAGGCTGAATGGGGGAGCTGTAGTTGGAGAGGTGAACAGAAAGTTCTCCACGAACGAGAACACGCTAACAGTCGGAGGTTCATACGTGGTTGACCCTGAGACGGTTGTGAAGGCGAGGCTCAACAACCACGGCAATCTTGGGGCTCTTTTGCAGCACCAGCTCACACCCAAATCTTCACTTACACTCTCTGCAGCCTTTGACACCAAGGCATTAGAGAGGCATCCGAACTTCGGGTTGGCGCTCTCCCTCAAGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166
Pfam Domains
Protein Families
Porin_3

Protein Analysis

279

Amino Acids

29.44

Weight (kDa)

8.62

Isoelectric Point (pI)

16.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 5 - 271 3.9e-68 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 200
AciI CCGC 2 cut(s) 30, 363
AcoI YGGCCR 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 557
AfaI GTAC 2 cut(s) 415, 479
AfiI CCNNNNNNNGG 4 cut(s) 130, 391, 679, 809
AgsI TTSAA 2 cut(s) 291, 513
AjuI GAANNNNNNNTTGG 2 cut(s) 797, 829
AluBI AGCT 6 cut(s) 215, 443, 495, 518, 596, 739
AluI AGCT 6 cut(s) 215, 443, 495, 518, 596, 739
Alw26I GTCTC 2 cut(s) 241, 671
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 2 cut(s) 13, 420
ApeKI GCWGC 3 cut(s) 173, 730, 770
Asp718I GGTACC 1 cut(s) 413
AspLEI GCGC 2 cut(s) 202, 820
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 622
AvaI CYCGRG 1 cut(s) 130
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 724
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 185, 742, 782
BccI CCATC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 724
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 2 cut(s) 241, 671
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 2 cut(s) 597, 768
BfoI RGCGCY 1 cut(s) 821
BisI GCNGC 3 cut(s) 174, 731, 771
BlsI GCNGC 3 cut(s) 175, 732, 772
Bme1390I CCNGG 1 cut(s) 419
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 415, 460
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 359, 577, 808
BpiI GAAGAC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 1 cut(s) 419
BsaAI YACGTR 2 cut(s) 565, 664
BsaHI GRCGYC 1 cut(s) 557
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 3 cut(s) 417, 706, 783
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 391, 679, 809
Bse118I RCCGGY 1 cut(s) 485
Bse1I ACTGG 2 cut(s) 118, 331
Bse3DI GCAATG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 417, 706, 783
BseGI GGATG 2 cut(s) 350, 799
BseLI CCNNNNNNNGG 4 cut(s) 130, 391, 679, 809
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 2 cut(s) 566, 666
BseNI ACTGG 2 cut(s) 118, 331
BseXI GCAGC 3 cut(s) 185, 742, 782
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 15, 422
BshNI GGYRCC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 2 cut(s) 419, 486
BslFI GGGAC 2 cut(s) 80, 367
BslI CCNNNNNNNGG 4 cut(s) 130, 391, 679, 809
BsmAI GTCTC 2 cut(s) 241, 671
BsmBI CGTCTC 1 cut(s) 671
BsmFI GGGAC 2 cut(s) 80, 367
BsnI GGCC 2 cut(s) 15, 422
Bso31I GGTCTC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 724
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 2 cut(s) 30, 363
BspANI GGCC 2 cut(s) 15, 422
BspCNI CTCAG 2 cut(s) 567, 667
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 415, 460
BspMAI CTGCAG 1 cut(s) 772
BspT107I GGYRCC 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 485
BsrI ACTGG 2 cut(s) 118, 331
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 417, 706, 783
BssMI GATC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 783
Bst4CI ACNGT 3 cut(s) 253, 649, 682
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 557
BstBAI YACGTR 2 cut(s) 565, 664
BstC8I GCNNGC 1 cut(s) 581
BstDEI CTNAG 3 cut(s) 474, 575, 675
BstDSI CCRYGG 1 cut(s) 706
BstF5I GGATG 2 cut(s) 350, 799
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 821
BstHHI GCGC 2 cut(s) 202, 820
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 241, 671
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 434, 736
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 2 cut(s) 597, 768
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 185, 742, 782
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 2 cut(s) 15, 422
BtgI CCRYGG 1 cut(s) 706
BtgZI GCGATG 1 cut(s) 268
BtsCI GGATG 2 cut(s) 350, 799
BtsIMutI CAGTG 4 cut(s) 75, 105, 249, 255
Cac8I GCNNGC 1 cut(s) 581
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 2 cut(s) 202, 820
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 546
Csp6I GTAC 2 cut(s) 414, 478
CviAII CATG 1 cut(s) 347
CviQI GTAC 2 cut(s) 414, 478
DdeI CTNAG 3 cut(s) 474, 575, 675
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 783
Eco24I GRGCYC 1 cut(s) 724
Eco31I GGTCTC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 783
EcoT22I ATGCAT 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 724
ErhI CCWWGG 1 cut(s) 783
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 1 cut(s) 350
FaiI YATR 5 cut(s) 72, 170, 348, 562, 661
FaqI GGGAC 2 cut(s) 80, 367
FatI CATG 1 cut(s) 346
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 174, 731, 771
FokI GGATG 2 cut(s) 337, 786
FriOI GRGCYC 1 cut(s) 724
Fsp4HI GCNGC 3 cut(s) 174, 731, 771
FspBI CTAG 1 cut(s) 444
GlaI GCGC 2 cut(s) 201, 819
GluI GCNGC 3 cut(s) 174, 731, 771
HaeII RGCGCY 1 cut(s) 821
HaeIII GGCC 2 cut(s) 15, 422
HapII CCGG 2 cut(s) 419, 486
HgaI GACGC 1 cut(s) 546
HhaI GCGC 2 cut(s) 202, 820
Hin1I GRCGYC 1 cut(s) 557
Hin1II CATG 1 cut(s) 350
Hin6I GCGC 2 cut(s) 200, 818
HinP1I GCGC 2 cut(s) 200, 818
HincII GTYRAC 2 cut(s) 6, 670
HindII GTYRAC 2 cut(s) 6, 670
HinfI GANTC 4 cut(s) 380, 509, 526, 545
HpaII CCGG 2 cut(s) 419, 486
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 4 cut(s) 6, 394, 613, 670
Hpy188I TCNGA 3 cut(s) 375, 653, 804
Hpy188III TCNNGA 3 cut(s) 341, 451, 462
Hpy8I GTNNAC 4 cut(s) 6, 394, 613, 670
HpyAV CCTTC 3 cut(s) 279, 364, 682
HpyCH4III ACNGT 3 cut(s) 253, 649, 682
HpyCH4IV ACGT 2 cut(s) 564, 663
HpyCH4V TGCA 4 cut(s) 350, 568, 730, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 736
HpyF3I CTNAG 3 cut(s) 474, 575, 675
HpySE526I ACGT 2 cut(s) 564, 663
Hsp92I GRCGYC 1 cut(s) 557
Hsp92II CATG 1 cut(s) 350
HspAI GCGC 2 cut(s) 200, 818
KpnI GGTACC 1 cut(s) 417
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 434, 593
Lsp1109I GCAGC 3 cut(s) 185, 742, 782
LweI GCATC 3 cut(s) 359, 577, 808
MaeI CTAG 1 cut(s) 444
MaeII ACGT 2 cut(s) 564, 663
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 5 cut(s) 16, 97, 150, 329, 744
MhlI GDGCHC 1 cut(s) 724
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 3 cut(s) 303, 583, 631
MnlI CCTC 8 cut(s) 5, 32, 143, 601, 647, 687, 789, 836
Mph1103I ATGCAT 1 cut(s) 352
MseI TTAA 2 cut(s) 60, 126
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 2 cut(s) 419, 486
MspR9I CCNGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 434, 736
NciI CCSGG 1 cut(s) 419
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 350
NlaIV GGNNCC 2 cut(s) 415, 460
NmuCI GTSAC 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 1 cut(s) 350
PfeI GAWTC 3 cut(s) 509, 526, 545
PkrI GCNGC 3 cut(s) 175, 732, 772
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Ppu21I YACGTR 2 cut(s) 565, 664
PspN4I GGNNCC 2 cut(s) 415, 460
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 521
RsaI GTAC 2 cut(s) 415, 479
RsaNI GTAC 2 cut(s) 414, 478
RseI CAYNNNNRTG 1 cut(s) 345
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 60, 126
SatI GCNGC 3 cut(s) 174, 731, 771
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 1 cut(s) 724
SfaNI GCATC 3 cut(s) 359, 577, 808
SfcI CTRYAG 2 cut(s) 597, 768
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SsiI CCGC 2 cut(s) 30, 363
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 1 cut(s) 783
TaaI ACNGT 3 cut(s) 253, 649, 682
TaiI ACGT 2 cut(s) 567, 666
TaqI TCGA 2 cut(s) 5, 204
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 3 cut(s) 509, 526, 545
Tru1I TTAA 2 cut(s) 60, 126
Tru9I TTAA 2 cut(s) 60, 126
TscAI CASTG 4 cut(s) 82, 112, 256, 262
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 3 cut(s) 173, 730, 770
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 648
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 4 cut(s) 82, 112, 256, 262
XceI RCATGY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 713
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 444
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.