Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003645

Physical Location & Seq

Genomic Coordinates Reverse (-)

73319052 .. 73321814

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGCAAGGGACCGGGACTCTTCTCCGACATCGGCAAAAAGGCCAAAGATCTTCTGACCAGGGACTACAACTCCGATCAGAAATTCAGTGTCTCCTCCTACAGCGATGCCGGTGTGGCTCTCACATCAACAGCAGTGAAAAAAGGAGGACTGTCCACCGGGGACATTGCTACACAGTACAAATACAAGAACGCAGTCGTTGATGTCAAAGTTGACACAGAATCAAATATCTCAACTACCTTCACAATCACAGATATTGTTCCATCCACAAAGACTATAGCTTCATTCAAAGTGCCAGACTATAATGCTGTTGCTTTGAATCAATCCCCAGCCATTGATTTTTCAGCTACCATTGGTACCCCAACCATTGCATTTGGTGCAGAAGCTGGTTATGACACCACTTCTGGAAACTTTACAAAGTACACTGCAGGAATTAGCGTGACACAATCGGTTTCCAATGCTTCAATAATTCTGGGCGACAAGGGAGACAGTATAAAGGCATCTTATGTGCATTATGTGGATCTGTTGAAGAGGAGTGCTGCTGTTGGAGAAATCACTAGAAAGTTTTCCACGAATGAGAACACTTTCACAGTCGGAGGCCAATATGCTATTGATCCCTTAACTGTAGTGAAAGCAAAGCTCAACAATCACGGCAAGCTGGGAGCCCTCCTGCAGCATGAAGTGATACCAAAGTCCCTGCTGACAGTATCTGGTGAGATTGACACCAAGTCCTTGGACAAACATCCCAAATTCGGTTTGGCCATTGCCCTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

259

Amino Acids

27.37

Weight (kDa)

8.97

Isoelectric Point (pI)

18.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	4 - 101	1.3e-22	Eukaryotic porin
Porin_3	PF01459	104 - 252	4.2e-42	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67500 AT5G67500 AT5G67500
fragaria_vesca	FvH4_1g17630 FvH4_2g33140
malus_domestica	MD02G1185100.v1.1 MD15G1070400.v1.1 MD15G1296700.v1.1
prunus_persica	Prupe.1G423200_v2.0.a1 Prupe.6G221700_v2.0.a1
pyrus_communis	pycom02g15000 pycom15g06620
rosa_chinensis	RchiOBHm_Chr2g0107951 RchiOBHm_Chr6g0309531
rosa_laevigata	RLG00000010556 RLG00000017628
rosa_multiflora	Rmu_co8522085.1_g000004 Rmu_sc0001484.1_g000031 Rmu_sc0007283.1_g000010 Rmu_sc0024715.1_g000005 Rmu_sc0030536.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135790 Rroxscaffold_7G00159330
rosa_rugosa	Rorug02G0148900.1 Rorug06G0372600
rosa_samantha	Rh2AG198200 Rh2BG211000 Rh2CG202800 Rh2DG205800 Rh6AG486000 Rh6BG495400 Rh6CG500400 Rh6DG486300
rosa_wichuraiana	Rw2G015720 Rw6G042330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	356
AclWI	GGATC	2 cut(s)	528, 608
AcoI	YGGCCR	1 cut(s)	759
AcsI	RAATTY	2 cut(s)	83, 749
AfaI	GTAC	3 cut(s)	179, 358, 422
AfiI	CCNNNNNNNGG	1 cut(s)	752
AgsI	TTSAA	4 cut(s)	289, 319, 465, 529
AhdI	GACNNNNNGTC	1 cut(s)	727
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	5 cut(s)	281, 347, 386, 640, 658
AluI	AGCT	5 cut(s)	281, 347, 386, 640, 658
Alw26I	GTCTC	2 cut(s)	97, 480
AlwI	GGATC	2 cut(s)	528, 608
AlwNI	CAGNNNCTG	2 cut(s)	386, 710
AoxI	GGCC	3 cut(s)	42, 598, 759
ApeKI	GCWGC	2 cut(s)	539, 673
ApoI	RAATTY	2 cut(s)	83, 749
Asp700I	GAANNNNTTC	2 cut(s)	565, 584
Asp718I	GGTACC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	2 cut(s)	15, 160
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	11
BaeI	ACNNNNGTAYC	2 cut(s)	677, 710
BalI	TGGCCA	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	526, 685
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	667
BciT130I	CCWGG	1 cut(s)	61
BcnI	CCSGG	2 cut(s)	15, 160
BcoDI	GTCTC	2 cut(s)	97, 480
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	5 cut(s)	100, 276, 426, 624, 671
BglI	GCCNNNNNGGC	1 cut(s)	116
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	2 cut(s)	540, 674
BlsI	GCNGC	2 cut(s)	541, 675
Bme1390I	CCNGG	3 cut(s)	15, 61, 160
Bme18I	GGWCC	1 cut(s)	11
BmeRI	GACNNNNNGTC	1 cut(s)	727
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	3 cut(s)	12, 358, 664
BmrFI	CCNGG	3 cut(s)	15, 61, 160
BmsI	GCATC	2 cut(s)	97, 509
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	2 cut(s)	15, 160
BsaJI	CCNNGG	3 cut(s)	60, 159, 732
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse118I	RCCGGY	1 cut(s)	110
Bse3DI	GCAATG	3 cut(s)	165, 366, 762
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	3 cut(s)	60, 159, 732
BseGI	GGATG	2 cut(s)	263, 742
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMI	GCAATG	3 cut(s)	165, 366, 762
BseRI	GAGGAG	2 cut(s)	85, 547
BseXI	GCAGC	2 cut(s)	526, 685
BseYI	CCCAGC	2 cut(s)	328, 658
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	44, 600, 761
BshNI	GGYRCC	1 cut(s)	356
BsiSI	CCGG	3 cut(s)	14, 111, 159
BslFI	GGGAC	5 cut(s)	24, 30, 77, 176, 679
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	2 cut(s)	97, 480
BsmFI	GGGAC	5 cut(s)	24, 30, 77, 176, 679
BsnI	GGCC	3 cut(s)	44, 600, 761
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	4 cut(s)	49, 76, 520, 613
BspANI	GGCC	3 cut(s)	44, 600, 761
BspLI	GGNNCC	3 cut(s)	12, 358, 664
BspMAI	CTGCAG	2 cut(s)	430, 675
BspPI	GGATC	2 cut(s)	528, 608
BspT107I	GGYRCC	1 cut(s)	356
BsrDI	GCAATG	3 cut(s)	165, 366, 762
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	60, 159, 732
BssMI	GATC	4 cut(s)	49, 76, 520, 613
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	6 cut(s)	153, 177, 491, 592, 625, 706
Bst6I	CTCTTC	2 cut(s)	26, 524
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	263, 742
BstKTI	GATC	4 cut(s)	52, 79, 523, 616
BstMAI	GTCTC	2 cut(s)	97, 480
BstMBI	GATC	4 cut(s)	49, 76, 520, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 377
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	13, 59, 158
BstSFI	CTRYAG	5 cut(s)	100, 276, 426, 624, 671
BstV1I	GCAGC	2 cut(s)	526, 685
BstX2I	RGATCY	2 cut(s)	49, 520
BstXI	CCANNNNNNTGG	1 cut(s)	733
BstYI	RGATCY	2 cut(s)	49, 520
BsuRI	GGCC	3 cut(s)	44, 600, 761
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	263, 742
BtsI	GCAGTG	2 cut(s)	141, 423
BtsIMutI	CAGTG	3 cut(s)	94, 141, 423
Cac8I	GCNNGC	1 cut(s)	656
CaiI	CAGNNNCTG	2 cut(s)	386, 710
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	178, 357, 421
CviAII	CATG	1 cut(s)	677
CviQI	GTAC	3 cut(s)	178, 357, 421
DpnI	GATC	4 cut(s)	51, 78, 522, 615
DpnII	GATC	4 cut(s)	49, 76, 520, 613
DriI	GACNNNNNGTC	1 cut(s)	727
EaeI	YGGCCR	1 cut(s)	759
Eam1104I	CTCTTC	2 cut(s)	26, 524
Eam1105I	GACNNNNNGTC	1 cut(s)	727
EarI	CTCTTC	2 cut(s)	26, 524
Eco130I	CCWWGG	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	1 cut(s)	680
FaiI	YATR	8 cut(s)	278, 303, 393, 494, 507, 516, 606, 678
FaqI	GGGAC	5 cut(s)	24, 30, 77, 176, 679
FatI	CATG	1 cut(s)	676
Fnu4HI	GCNGC	2 cut(s)	540, 674
FokI	GGATG	2 cut(s)	250, 729
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	2 cut(s)	540, 674
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	2 cut(s)	540, 674
GsaI	CCCAGC	2 cut(s)	332, 662
HaeIII	GGCC	3 cut(s)	44, 600, 761
HapII	CCGG	3 cut(s)	14, 111, 159
Hin1II	CATG	1 cut(s)	680
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	18, 221, 319
HpaII	CCGG	3 cut(s)	14, 111, 159
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	3 cut(s)	156, 214, 423
Hpy188I	TCNGA	5 cut(s)	28, 57, 76, 81, 596
Hpy188III	TCNNGA	1 cut(s)	405
Hpy8I	GTNNAC	3 cut(s)	156, 214, 423
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	6 cut(s)	153, 177, 491, 592, 625, 706
HpyCH4V	TGCA	5 cut(s)	371, 380, 428, 511, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 377
Hsp92II	CATG	1 cut(s)	680
KpnI	GGTACC	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	49, 76, 520, 613
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	2 cut(s)	526, 685
LweI	GCATC	2 cut(s)	97, 509
MaeI	CTAG	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	4 cut(s)	51, 78, 522, 615
MboI	GATC	4 cut(s)	49, 76, 520, 613
MboII	GAAGA	3 cut(s)	13, 44, 541
MflI	RGATCY	2 cut(s)	49, 520
MhlI	GDGCHC	1 cut(s)	667
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	4 cut(s)	83, 432, 468, 749
MluNI	TGGCCA	1 cut(s)	761
MlyI	GAGTC	1 cut(s)	12
MmeI	TCCRAC	3 cut(s)	51, 526, 574
MnlI	CCTC	6 cut(s)	106, 140, 525, 590, 677, 779
Mox20I	TGGCCA	1 cut(s)	761
MroXI	GAANNNNTTC	2 cut(s)	565, 584
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	1 cut(s)	620
Msp20I	TGGCCA	1 cut(s)	761
MspI	CCGG	3 cut(s)	14, 111, 159
MspR9I	CCNGG	3 cut(s)	15, 61, 160
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	116, 377
NciI	CCSGG	2 cut(s)	15, 160
NdeII	GATC	4 cut(s)	49, 76, 520, 613
NlaIII	CATG	1 cut(s)	680
NlaIV	GGNNCC	3 cut(s)	12, 358, 664
NmuCI	GTSAC	1 cut(s)	439
PdmI	GAANNNNTTC	2 cut(s)	565, 584
PfeI	GAWTC	2 cut(s)	221, 319
PkrI	GCNGC	2 cut(s)	541, 675
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	59
PspFI	CCCAGC	2 cut(s)	328, 658
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	3 cut(s)	12, 358, 664
PspPI	GGNCC	1 cut(s)	11
PstI	CTGCAG	2 cut(s)	430, 675
PstNI	CAGNNNCTG	2 cut(s)	386, 710
PsuI	RGATCY	2 cut(s)	49, 520
RsaI	GTAC	3 cut(s)	179, 358, 422
RsaNI	GTAC	3 cut(s)	178, 357, 421
SaqAI	TTAA	1 cut(s)	620
SatI	GCNGC	2 cut(s)	540, 674
Sau3AI	GATC	4 cut(s)	49, 76, 520, 613
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	15, 61, 160
SduI	GDGCHC	1 cut(s)	667
SetI	ASST	6 cut(s)	242, 283, 349, 388, 642, 660
SfaNI	GCATC	2 cut(s)	97, 509
SfcI	CTRYAG	5 cut(s)	100, 276, 426, 624, 671
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	4 cut(s)	83, 432, 468, 749
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	3 cut(s)	13, 59, 158
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	6 cut(s)	153, 177, 491, 592, 625, 706
TasI	AATT	4 cut(s)	83, 432, 468, 749
TatI	WGTACW	2 cut(s)	177, 420
TfiI	GAWTC	2 cut(s)	221, 319
Tru1I	TTAA	1 cut(s)	620
Tru9I	TTAA	1 cut(s)	620
TscAI	CASTG	3 cut(s)	94, 141, 430
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	539, 673
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	273, 693
TspRI	CASTG	3 cut(s)	94, 141, 430
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	2 cut(s)	83, 749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmnI	GAANNNNTTC	2 cut(s)	565, 584
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.